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Rounak Dey, Ph.D.

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Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
  1. Li X, Quick C, Zhou H, Gaynor SM, Liu Y, Chen H, Selvaraj MS, Sun R, Dey R, Arnett DK, Bielak LF, Bis JC, Blangero J, Boerwinkle E, Bowden DW, Brody JA, Cade BE, Correa A, Cupples LA, Curran JE, de Vries PS, Duggirala R, Freedman BI, Göring HHH, Guo X, Haessler J, Kalyani RR, Kooperberg C, Kral BG, Lange LA, Manichaikul A, Martin LW, McGarvey ST, Mitchell BD, Montasser ME, Morrison AC, Naseri T, O'Connell JR, Palmer ND, Peyser PA, Psaty BM, Raffield LM, Redline S, Reiner AP, Reupena MS, Rice KM, Rich SS, Sitlani CM, Smith JA, Taylor KD, Vasan RS, Willer CJ, Wilson JG, Yanek LR, Zhao W, Rotter JI, Natarajan P, Peloso GM, Li Z, Lin X. Powerful, scalable and resource-efficient meta-analysis of rare variant associations in large whole genome sequencing studies. Nat Genet. 2023 01; 55(1):154-164. PMID: 36564505.
    Citations:    Fields:    
  2. Li Z, Li X, Zhou H, Gaynor SM, Selvaraj MS, Arapoglou T, Quick C, Liu Y, Chen H, Sun R, Dey R, Arnett DK, Auer PL, Bielak LF, Bis JC, Blackwell TW, Blangero J, Boerwinkle E, Bowden DW, Brody JA, Cade BE, Conomos MP, Correa A, Cupples LA, Curran JE, de Vries PS, Duggirala R, Franceschini N, Freedman BI, Göring HHH, Guo X, Kalyani RR, Kooperberg C, Kral BG, Lange LA, Lin BM, Manichaikul A, Manning AK, Martin LW, Mathias RA, Meigs JB, Mitchell BD, Montasser ME, Morrison AC, Naseri T, O'Connell JR, Palmer ND, Peyser PA, Psaty BM, Raffield LM, Redline S, Reiner AP, Reupena MS, Rice KM, Rich SS, Smith JA, Taylor KD, Taub MA, Vasan RS, Weeks DE, Wilson JG, Yanek LR, Zhao W, Rotter JI, Willer CJ, Natarajan P, Peloso GM, Lin X. A framework for detecting noncoding rare-variant associations of large-scale whole-genome sequencing studies. Nat Methods. 2022 12; 19(12):1599-1611. PMID: 36303018.
    Citations: 3     Fields:    Translation:Humans
  3. Dey R, Zhou W, Kiiskinen T, Havulinna A, Elliott A, Karjalainen J, Kurki M, Qin A, Lee S, Palotie A, Neale B, Daly M, Lin X. Efficient and accurate frailty model approach for genome-wide survival association analysis in large-scale biobanks. Nat Commun. 2022 09 16; 13(1):5437. PMID: 36114182; PMCID: PMC9481565.
    Citations:    Fields:    Translation:Humans
  4. Shi A, Gaynor SM, Dey R, Zhang H, Quick C, Lin X. COVID-19 Spread Mapper: a multi-resolution, unified framework and open-source tool. Bioinformatics. 2022 04 28; 38(9):2661-2663. PMID: 35244140; PMCID: PMC9890301.
    Citations:    Fields:    
  5. Hong D, Dey R, Lin X, Cleary B, Dobriban E. Group testing via hypergraph factorization applied to COVID-19. Nat Commun. 2022 04 05; 13(1):1837. PMID: 35383149; PMCID: PMC8983763.
    Citations: 1     Fields:    Translation:HumansCellsPHPublic Health
  6. Bi W, Zhou W, Dey R, Mukherjee B, Sampson JN, Lee S. Efficient mixed model approach for large-scale genome-wide association studies of ordinal categorical phenotypes. Am J Hum Genet. 2021 05 06; 108(5):825-839. PMID: 33836139; PMCID: PMC8206161.
    Citations: 3     Fields:    Translation:Humans
  7. Li X, Li Z, Zhou H, Gaynor SM, Liu Y, Chen H, Sun R, Dey R, Arnett DK, Aslibekyan S, Ballantyne CM, Bielak LF, Blangero J, Boerwinkle E, Bowden DW, Broome JG, Conomos MP, Correa A, Cupples LA, Curran JE, Freedman BI, Guo X, Hindy G, Irvin MR, Kardia SLR, Kathiresan S, Khan AT, Kooperberg CL, Laurie CC, Liu XS, Mahaney MC, Manichaikul AW, Martin LW, Mathias RA, McGarvey ST, Mitchell BD, Montasser ME, Moore JE, Morrison AC, O'Connell JR, Palmer ND, Pampana A, Peralta JM, Peyser PA, Psaty BM, Redline S, Rice KM, Rich SS, Smith JA, Tiwari HK, Tsai MY, Vasan RS, Wang FF, Weeks DE, Weng Z, Wilson JG, Yanek LR, Neale BM, Sunyaev SR, Abecasis GR, Rotter JI, Willer CJ, Peloso GM, Natarajan P, Lin X. Dynamic incorporation of multiple in silico functional annotations empowers rare variant association analysis of large whole-genome sequencing studies at scale. Nat Genet. 2020 09; 52(9):969-983. PMID: 32839606; PMCID: PMC7483769.
    Citations: 27     Fields:    Translation:Humans
  8. Zhang D, Dey R, Lee S. Fast and robust ancestry prediction using principal component analysis. Bioinformatics. 2020 06 01; 36(11):3439-3446. PMID: 32196066; PMCID: PMC7267814.
    Citations: 6     Fields:    
  9. Bi W, Zhao Z, Dey R, Fritsche LG, Mukherjee B, Lee S. A Fast and Accurate Method for Genome-wide Scale Phenome-wide G × E Analysis and Its Application to UK Biobank. Am J Hum Genet. 2019 12 05; 105(6):1182-1192. PMID: 31735295; PMCID: PMC6904814.
    Citations: 7     Fields:    Translation:Humans
  10. Dey R, Nielsen JB, Fritsche LG, Zhou W, Zhu H, Willer CJ, Lee S. Robust meta-analysis of biobank-based genome-wide association studies with unbalanced binary phenotypes. Genet Epidemiol. 2019 07; 43(5):462-476. PMID: 30793809; PMCID: PMC6559837.
    Citations: 3     Fields:    Translation:Humans
  11. Dey R, Lee S. Asymptotic properties of principal component analysis and shrinkage-bias adjustment under the generalized spiked population model. J Multivar Anal. 2019 Sep; 173:145-164. PMID: 32831421; PMCID: PMC7441582.
    Citations: 1     
  12. Zhou W, Nielsen JB, Fritsche LG, Dey R, Gabrielsen ME, Wolford BN, LeFaive J, VandeHaar P, Gagliano SA, Gifford A, Bastarache LA, Wei WQ, Denny JC, Lin M, Hveem K, Kang HM, Abecasis GR, Willer CJ, Lee S. Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies. Nat Genet. 2018 09; 50(9):1335-1341. PMID: 30104761.
    Citations: 239     Fields:    Translation:Humans
  13. Nielsen JB, Thorolfsdottir RB, Fritsche LG, Zhou W, Skov MW, Graham SE, Herron TJ, McCarthy S, Schmidt EM, Sveinbjornsson G, Surakka I, Mathis MR, Yamazaki M, Crawford RD, Gabrielsen ME, Skogholt AH, Holmen OL, Lin M, Wolford BN, Dey R, Dalen H, Sulem P, Chung JH, Backman JD, Arnar DO, Thorsteinsdottir U, Baras A, O'Dushlaine C, Holst AG, Wen X, Hornsby W, Dewey FE, Boehnke M, Kheterpal S, Mukherjee B, Lee S, Kang HM, Holm H, Kitzman J, Shavit JA, Jalife J, Brummett CM, Teslovich TM, Carey DJ, Gudbjartsson DF, Stefansson K, Abecasis GR, Hveem K, Willer CJ. Biobank-driven genomic discovery yields new insight into atrial fibrillation biology. Nat Genet. 2018 09; 50(9):1234-1239. PMID: 30061737.
    Citations: 185     Fields:    Translation:Humans
  14. Dey R, Schmidt EM, Abecasis GR, Lee S. A Fast and Accurate Algorithm to Test for Binary Phenotypes and Its Application to PheWAS. Am J Hum Genet. 2017 Jul 06; 101(1):37-49. PMID: 28602423; PMCID: PMC5501775.
    Citations: 47     Fields:    Translation:Humans
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© 2023 President and Fellows of Harvard College
Funded by the NIH National Center for Advancing Translational Sciences through its Clinical and Translational Science Awards Program, grant number UL1TR002541.