Harvard Catalyst Profiles

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Özlem Uzuner, Ph.D.

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Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
  1. Tao C, Filannino M, Uzuner Ö. FABLE: A Semi-Supervised Prescription Information Extraction System. AMIA Annu Symp Proc. 2018; 2018:1534-1543. PMID: 30815199.
    Citations:    
  2. Filannino M, Stubbs A, Uzuner Ö. Corrigendum to "Symptom severity prediction from neuropsychiatric clinical records: Overview of 2016 CEGS N-GRID shared tasks Track 2" [J Biomed Inform. 2017 Nov;75S:S62-S70]. J Biomed Inform. 2018 Sep; 85:204. PMID: 30213376.
    Citations: 1     Fields:    
  3. Filannino M, Uzuner Ö. Advancing the State of the Art in Clinical Natural Language Processing through Shared Tasks. Yearb Med Inform. 2018 Aug; 27(1):184-192. PMID: 30157522.
    Citations:    Fields:    
  4. Luo Y, Cheng Y, Uzuner Ö, Szolovits P, Starren J. Segment convolutional neural networks (Seg-CNNs) for classifying relations in clinical notes. J Am Med Inform Assoc. 2018 01 01; 25(1):93-98. PMID: 29025149.
    Citations: 2     Fields:    Translation:Humans
  5. Uzuner Ö, Stubbs A, Filannino M. A natural language processing challenge for clinical records: Research Domains Criteria (RDoC) for psychiatry. J Biomed Inform. 2017 11; 75S:S1-S3. PMID: 29042245.
    Citations:    Fields:    
  6. Tao C, Filannino M, Uzuner Ö. Prescription extraction using CRFs and word embeddings. J Biomed Inform. 2017 08; 72:60-66. PMID: 28684255.
    Citations:    Fields:    Translation:Humans
  7. Luo Y, Uzuner Ö, Szolovits P. Bridging semantics and syntax with graph algorithms-state-of-the-art of extracting biomedical relations. Brief Bioinform. 2017 07 01; 18(4):722. PMID: 28472242.
    Citations:    Fields:    
  8. Buchan K, Filannino M, Uzuner Ö. Automatic prediction of coronary artery disease from clinical narratives. J Biomed Inform. 2017 08; 72:23-32. PMID: 28663072.
    Citations: 1     Fields:    Translation:Humans
  9. Stubbs A, Filannino M, Uzuner Ö. De-identification of psychiatric intake records: Overview of 2016 CEGS N-GRID shared tasks Track 1. J Biomed Inform. 2017 Nov; 75S:S4-S18. PMID: 28614702.
    Citations: 11     Fields:    Translation:Humans
  10. Filannino M, Stubbs A, Uzuner Ö. Symptom severity prediction from neuropsychiatric clinical records: Overview of 2016 CEGS N-GRID shared tasks Track 2. J Biomed Inform. 2017 Nov; 75S:S62-S70. PMID: 28455151.
    Citations: 10     Fields:    Translation:Humans
  11. Luo Y, Uzuner Ö, Szolovits P. Bridging semantics and syntax with graph algorithms-state-of-the-art of extracting biomedical relations. Brief Bioinform. 2017 01; 18(1):160-178. PMID: 26851224.
    Citations: 6     Fields:    Translation:Humans
  12. Uzuner Ö, Stubbs A. Practical applications for natural language processing in clinical research: The 2014 i2b2/UTHealth shared tasks. J Biomed Inform. 2015 Dec; 58 Suppl:S1-5. PMID: 26515500.
    Citations: 11     Fields:    
  13. Kumar V, Stubbs A, Shaw S, Uzuner Ö. Creation of a new longitudinal corpus of clinical narratives. J Biomed Inform. 2015 Dec; 58 Suppl:S6-S10. PMID: 26433122.
    Citations: 7     Fields:    Translation:Humans
  14. Stubbs A, Uzuner Ö. Annotating longitudinal clinical narratives for de-identification: The 2014 i2b2/UTHealth corpus. J Biomed Inform. 2015 Dec; 58 Suppl:S20-9. PMID: 26319540.
    Citations: 9     Fields:    
  15. Kotfila C, Uzuner Ö. A systematic comparison of feature space effects on disease classifier performance for phenotype identification of five diseases. J Biomed Inform. 2015 Dec; 58 Suppl:S92-S102. PMID: 26241355.
    Citations: 3     Fields:    Translation:Humans
  16. Stubbs A, Kotfila C, Uzuner Ö. Automated systems for the de-identification of longitudinal clinical narratives: Overview of 2014 i2b2/UTHealth shared task Track 1. J Biomed Inform. 2015 Dec; 58 Suppl:S11-9. PMID: 26225918.
    Citations: 21     Fields:    
  17. Stubbs A, Kotfila C, Xu H, Uzuner Ö. Identifying risk factors for heart disease over time: Overview of 2014 i2b2/UTHealth shared task Track 2. J Biomed Inform. 2015 Dec; 58 Suppl:S67-77. PMID: 26210362.
    Citations: 16     Fields:    Translation:Humans
  18. Zheng K, Vydiswaran VG, Liu Y, Wang Y, Stubbs A, Uzuner Ö, Gururaj AE, Bayer S, Aberdeen J, Rumshisky A, Pakhomov S, Liu H, Xu H. Ease of adoption of clinical natural language processing software: An evaluation of five systems. J Biomed Inform. 2015 Dec; 58 Suppl:S189-96. PMID: 26210361.
    Citations: 4     Fields:    Translation:Humans
  19. Stubbs A, Uzuner Ö. Annotating risk factors for heart disease in clinical narratives for diabetic patients. J Biomed Inform. 2015 Dec; 58 Suppl:S78-91. PMID: 26004790.
    Citations: 12     Fields:    Translation:Humans
  20. Uzuner Ö, Stubbs A, Sun W. Chronology of your health events: approaches to extracting temporal relations from medical narratives. J Biomed Inform. 2013 Dec; 46 Suppl:S1-4. PMID: 24286753.
    Citations: 1     Fields:    Translation:Humans
  21. Bodnari A, Szolovits P, Uzuner Ö. MCORES: a system for noun phrase coreference resolution for clinical records. J Am Med Inform Assoc. 2012 Sep-Oct; 19(5):906-12. PMID: 22419739.
    Citations: 2     Fields:    Translation:Humans
  22. Uzuner Ö, South BR, Shen S, DuVall SL. 2010 i2b2/VA challenge on concepts, assertions, and relations in clinical text. J Am Med Inform Assoc. 2011 Sep-Oct; 18(5):552-6. PMID: 21685143.
    Citations: 163     Fields:    Translation:Humans
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Funded by the NIH/NCATS Clinical and Translational Science Award (CTSA) program, grant number UL1TR001102, and through institutional support from Harvard University, Harvard Medical School, Harvard T.H. Chan School of Public Health, Beth Israel Deaconess Medical Center, Boston Children's Hospital, Brigham and Women's Hospital, Massachusetts General Hospital and the Dana Farber Cancer Institute.