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Özlem Uzuner, Ph.D.

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Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
  1. Uzuner Ö, Stubbs A, Lenert L. Advancing the state of the art in automatic extraction of adverse drug events from narratives. J Am Med Inform Assoc. 2020 Jan 01; 27(1):1-2. PMID: 31841150.
    Citations:    
  2. Stubbs A, Filannino M, Soysal E, Henry S, Uzuner Ö. Cohort selection for clinical trials: n2c2 2018 shared task track 1. J Am Med Inform Assoc. 2019 Nov 01; 26(11):1163-1171. PMID: 31562516.
    Citations:    
  3. Stubbs A, Uzuner Ö. New approaches to cohort selection. J Am Med Inform Assoc. 2019 Nov 01; 26(11):1161-1162. PMID: 31613362.
    Citations:    
  4. Spasic I, Uzuner Ö, Zhou L. Emerging clinical applications of text analytics. Int J Med Inform. 2020 02; 134:103974. PMID: 31630961.
    Citations:    
  5. Lee K, Filannino M, Uzuner Ö. An Empirical Test of GRUs and Deep Contextualized Word Representations on De-Identification. Stud Health Technol Inform. 2019 Aug 21; 264:218-222. PMID: 31437917.
    Citations:    
  6. Tao C, Lee K, Filannino M, Uzuner Ö. An Exploratory Study on Pseudo-Data Generation in Prescription and Adverse Drug Reaction Extraction. Stud Health Technol Inform. 2019 Aug 21; 264:388-392. PMID: 31437951.
    Citations:    
  7. Tao C, Filannino M, Uzuner Ö. FABLE: A Semi-Supervised Prescription Information Extraction System. AMIA Annu Symp Proc. 2018; 2018:1534-1543. PMID: 30815199.
    Citations:    
  8. Filannino M, Stubbs A, Uzuner Ö. Corrigendum to "Symptom severity prediction from neuropsychiatric clinical records: Overview of 2016 CEGS N-GRID shared tasks Track 2" [J Biomed Inform. 2017 Nov;75S:S62-S70]. J Biomed Inform. 2018 Sep; 85:204. PMID: 30213376.
    Citations: 1     Fields:    
  9. Filannino M, Uzuner Ö. Advancing the State of the Art in Clinical Natural Language Processing through Shared Tasks. Yearb Med Inform. 2018 Aug; 27(1):184-192. PMID: 30157522.
    Citations:    Fields:    
  10. Luo Y, Cheng Y, Uzuner Ö, Szolovits P, Starren J. Segment convolutional neural networks (Seg-CNNs) for classifying relations in clinical notes. J Am Med Inform Assoc. 2018 01 01; 25(1):93-98. PMID: 29025149.
    Citations: 2     Fields:    Translation:Humans
  11. Uzuner Ö, Stubbs A, Filannino M. A natural language processing challenge for clinical records: Research Domains Criteria (RDoC) for psychiatry. J Biomed Inform. 2017 11; 75S:S1-S3. PMID: 29042245.
    Citations:    Fields:    
  12. Tao C, Filannino M, Uzuner Ö. Prescription extraction using CRFs and word embeddings. J Biomed Inform. 2017 08; 72:60-66. PMID: 28684255.
    Citations:    Fields:    Translation:Humans
  13. Luo Y, Uzuner Ö, Szolovits P. Bridging semantics and syntax with graph algorithms-state-of-the-art of extracting biomedical relations. Brief Bioinform. 2017 07 01; 18(4):722. PMID: 28472242.
    Citations:    Fields:    
  14. Buchan K, Filannino M, Uzuner Ö. Automatic prediction of coronary artery disease from clinical narratives. J Biomed Inform. 2017 08; 72:23-32. PMID: 28663072.
    Citations: 1     Fields:    Translation:Humans
  15. Stubbs A, Filannino M, Uzuner Ö. De-identification of psychiatric intake records: Overview of 2016 CEGS N-GRID shared tasks Track 1. J Biomed Inform. 2017 Nov; 75S:S4-S18. PMID: 28614702.
    Citations: 11     Fields:    Translation:Humans
  16. Filannino M, Stubbs A, Uzuner Ö. Symptom severity prediction from neuropsychiatric clinical records: Overview of 2016 CEGS N-GRID shared tasks Track 2. J Biomed Inform. 2017 Nov; 75S:S62-S70. PMID: 28455151.
    Citations: 10     Fields:    Translation:Humans
  17. Luo Y, Uzuner Ö, Szolovits P. Bridging semantics and syntax with graph algorithms-state-of-the-art of extracting biomedical relations. Brief Bioinform. 2017 01; 18(1):160-178. PMID: 26851224.
    Citations: 6     Fields:    Translation:Humans
  18. Uzuner Ö, Stubbs A. Practical applications for natural language processing in clinical research: The 2014 i2b2/UTHealth shared tasks. J Biomed Inform. 2015 Dec; 58 Suppl:S1-5. PMID: 26515500.
    Citations: 11     Fields:    
  19. Kumar V, Stubbs A, Shaw S, Uzuner Ö. Creation of a new longitudinal corpus of clinical narratives. J Biomed Inform. 2015 Dec; 58 Suppl:S6-S10. PMID: 26433122.
    Citations: 7     Fields:    Translation:Humans
  20. Stubbs A, Uzuner Ö. Annotating longitudinal clinical narratives for de-identification: The 2014 i2b2/UTHealth corpus. J Biomed Inform. 2015 Dec; 58 Suppl:S20-9. PMID: 26319540.
    Citations: 9     Fields:    
  21. Kotfila C, Uzuner Ö. A systematic comparison of feature space effects on disease classifier performance for phenotype identification of five diseases. J Biomed Inform. 2015 Dec; 58 Suppl:S92-S102. PMID: 26241355.
    Citations: 3     Fields:    Translation:Humans
  22. Stubbs A, Kotfila C, Uzuner Ö. Automated systems for the de-identification of longitudinal clinical narratives: Overview of 2014 i2b2/UTHealth shared task Track 1. J Biomed Inform. 2015 Dec; 58 Suppl:S11-9. PMID: 26225918.
    Citations: 21     Fields:    
  23. Stubbs A, Kotfila C, Xu H, Uzuner Ö. Identifying risk factors for heart disease over time: Overview of 2014 i2b2/UTHealth shared task Track 2. J Biomed Inform. 2015 Dec; 58 Suppl:S67-77. PMID: 26210362.
    Citations: 16     Fields:    Translation:Humans
  24. Zheng K, Vydiswaran VG, Liu Y, Wang Y, Stubbs A, Uzuner Ö, Gururaj AE, Bayer S, Aberdeen J, Rumshisky A, Pakhomov S, Liu H, Xu H. Ease of adoption of clinical natural language processing software: An evaluation of five systems. J Biomed Inform. 2015 Dec; 58 Suppl:S189-96. PMID: 26210361.
    Citations: 4     Fields:    Translation:Humans
  25. Stubbs A, Uzuner Ö. Annotating risk factors for heart disease in clinical narratives for diabetic patients. J Biomed Inform. 2015 Dec; 58 Suppl:S78-91. PMID: 26004790.
    Citations: 12     Fields:    Translation:Humans
  26. Uzuner Ö, Stubbs A, Sun W. Chronology of your health events: approaches to extracting temporal relations from medical narratives. J Biomed Inform. 2013 Dec; 46 Suppl:S1-4. PMID: 24286753.
    Citations: 1     Fields:    Translation:Humans
  27. Bodnari A, Szolovits P, Uzuner Ö. MCORES: a system for noun phrase coreference resolution for clinical records. J Am Med Inform Assoc. 2012 Sep-Oct; 19(5):906-12. PMID: 22419739.
    Citations: 2     Fields:    Translation:Humans
  28. Uzuner Ö, South BR, Shen S, DuVall SL. 2010 i2b2/VA challenge on concepts, assertions, and relations in clinical text. J Am Med Inform Assoc. 2011 Sep-Oct; 18(5):552-6. PMID: 21685143.
    Citations: 163     Fields:    Translation:Humans
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Funded by the NIH National Center for Advancing Translational Sciences through its Clinical and Translational Science Awards Program, grant number UL1TR002541.