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Carles Hernandez-Ferrer, Ph.D.

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Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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  1. Vives-Usano M, Hernandez-Ferrer C, Maitre L, Ruiz-Arenas C, Andrusaityte S, Borràs E, Carracedo Á, Casas M, Chatzi L, Coen M, Estivill X, González JR, Grazuleviciene R, Gutzkow KB, Keun HC, Lau CE, Cadiou S, Lepeule J, Mason D, Quintela I, Robinson O, Sabidó E, Santorelli G, Schwarze PE, Siskos AP, Slama R, Vafeiadi M, Martí E, Vrijheid M, Bustamante M. In utero and childhood exposure to tobacco smoke and multi-layer molecular signatures in children. BMC Med. 2020 Aug 19; 18(1):243. PMID: 32811491.
    Citations:    Fields:    
  2. Atalaia A, Thompson R, Corvo A, Carmody L, Piscia D, Matalonga L, Macaya A, Lochmuller A, Fontaine B, Zurek B, Hernandez-Ferrer C, Rheinard C, Gómez-Andrés D, Desaphy JF, Schon K, Lohmann K, Jennings MJ, Synofzik M, Riess O, Yaou RB, Evangelista T, Ratnaike T, Bros-Facer V, Gumus G, Horvath R, Chinnery P, Laurie S, Graessner H, Robinson P, Lochmuller H, Beltran S, Bonne G. A guide to writing systematic reviews of rare disease treatments to generate FAIR-compliant datasets: building a Treatabolome. Orphanet J Rare Dis. 2020 08 12; 15(1):206. PMID: 32787960.
    Citations:    Fields:    
  3. Agier L, Basagaña X, Hernandez-Ferrer C, Maitre L, Tamayo Uria I, Urquiza J, Andrusaityte S, Casas M, de Castro M, Cequier E, Chatzi L, Donaire-Gonzalez D, Giorgis-Allemand L, Gonzalez JR, Grazuleviciene R, Gützkow KB, Haug LS, Sakhi AK, McEachan RRC, Meltzer HM, Nieuwenhuijsen M, Robinson O, Roumeliotaki T, Sunyer J, Thomsen C, Vafeiadi M, Valentin A, West J, Wright J, Siroux V, Vrijheid M, Slama R. Association between the pregnancy exposome and fetal growth. Int J Epidemiol. 2020 04 01; 49(2):572-586. PMID: 32167557.
    Citations:    Fields:    
  4. Kong SW, Hernandez-Ferrer C. Assessment of coverage for endogenous metabolites and exogenous chemical compounds using an untargeted metabolomics platform. Pac Symp Biocomput. 2020; 25:587-598. PMID: 31797630.
    Citations:    Fields:    
  5. Hernandez-Ferrer C, Wellenius GA, Tamayo I, Basagaña X, Sunyer J, Vrijheid M, Gonzalez JR. Comprehensive study of the exposome and omic data using rexposome Bioconductor Packages. Bioinformatics. 2019 12 15; 35(24):5344-5345. PMID: 31243429.
    Citations: 3     Fields:    Translation:HumansPHPublic Health
  6. Bustamante M, Hernandez-Ferrer C, Tewari A, Sarria Y, Harrison GI, Puigdecanet E, Nonell L, Kang W, Friedländer MR, Estivill X, González JR, Nieuwenhuijsen M, Young AR. Dose and time effects of solar-simulated ultraviolet radiation on the in vivo human skin transcriptome. Br J Dermatol. 2020 06; 182(6):1458-1468. PMID: 31529490.
    Citations: 1     Fields:    
  7. Lee IH, Negron JA, Hernandez-Ferrer C, Alvarez WJ, Mandl KD, Kong SW. The Clinical Genome and Ancestry Report: An interactive web application for prioritizing clinically implicated variants from genome sequencing data with ancestry composition. Hum Mutat. 2020 02; 41(2):387-396. PMID: 31691385.
    Citations:    Fields:    
  8. Warembourg C, Maitre L, Tamayo-Uria I, Fossati S, Roumeliotaki T, Aasvang GM, Andrusaityte S, Casas M, Cequier E, Chatzi L, Dedele A, Gonzalez JR, Gražuleviciene R, Haug LS, Hernandez-Ferrer C, Heude B, Karachaliou M, Krog NH, McEachan R, Nieuwenhuijsen M, Petraviciene I, Quentin J, Robinson O, Sakhi AK, Slama R, Thomsen C, Urquiza J, Vafeiadi M, West J, Wright J, Vrijheid M, Basagaña X. Early-Life Environmental Exposures and Blood Pressure in Children. J Am Coll Cardiol. 2019 09 10; 74(10):1317-1328. PMID: 31488269.
    Citations: 4     Fields:    Translation:HumansPHPublic Health
  9. Gruzieva O, Xu CJ, Yousefi P, Relton C, Merid SK, Breton CV, Gao L, Volk HE, Feinberg JI, Ladd-Acosta C, Bakulski K, Auffray C, Lemonnier N, Plusquin M, Ghantous A, Herceg Z, Nawrot TS, Pizzi C, Richiardi L, Rusconi F, Vineis P, Kogevinas M, Felix JF, Duijts L, den Dekker HT, Jaddoe VWV, Ruiz JL, Bustamante M, Antó JM, Sunyer J, Vrijheid M, Gutzkow KB, Grazuleviciene R, Hernandez-Ferrer C, Annesi-Maesano I, Lepeule J, Bousquet J, Bergström A, Kull I, Söderhäll C, Kere J, Gehring U, Brunekreef B, Just AC, Wright RJ, Peng C, Gold DR, Kloog I, DeMeo DL, Pershagen G, Koppelman GH, London SJ, Baccarelli AA, Melén E. Prenatal Particulate Air Pollution and DNA Methylation in Newborns: An Epigenome-Wide Meta-Analysis. Environ Health Perspect. 2019 05; 127(5):57012. PMID: 31148503.
    Citations: 6     Fields:    Translation:HumansCellsPHPublic Health
  10. Hwang KB, Lee IH, Li H, Won DG, Hernandez-Ferrer C, Negron JA, Kong SW. Comparative analysis of whole-genome sequencing pipelines to minimize false negative findings. Sci Rep. 2019 03 01; 9(1):3219. PMID: 30824715.
    Citations: 4     Fields:    Translation:Humans
  11. Hernandez-Ferrer C, Gonzalez JR. CTDquerier: a bioconductor R package for Comparative Toxicogenomics DatabaseTM data extraction, visualization and enrichment of environmental and toxicological studies. Bioinformatics. 2018 09 15; 34(18):3235-3237. PMID: 29688259.
    Citations:    Fields:    Translation:Humans
  12. Maitre L, de Bont J, Casas M, Robinson O, Aasvang GM, Agier L, Andrušaityte S, Ballester F, Basagaña X, Borràs E, Brochot C, Bustamante M, Carracedo A, de Castro M, Dedele A, Donaire-Gonzalez D, Estivill X, Evandt J, Fossati S, Giorgis-Allemand L, R Gonzalez J, Granum B, Grazuleviciene R, Bjerve Gützkow K, Småstuen Haug L, Hernandez-Ferrer C, Heude B, Ibarluzea J, Julvez J, Karachaliou M, Keun HC, Hjertager Krog N, Lau CE, Leventakou V, Lyon-Caen S, Manzano C, Mason D, McEachan R, Meltzer HM, Petraviciene I, Quentin J, Roumeliotaki T, Sabido E, Saulnier PJ, Siskos AP, Siroux V, Sunyer J, Tamayo I, Urquiza J, Vafeiadi M, van Gent D, Vives-Usano M, Waiblinger D, Warembourg C, Chatzi L, Coen M, van den Hazel P, Nieuwenhuijsen MJ, Slama R, Thomsen C, Wright J, Vrijheid M. Human Early Life Exposome (HELIX) study: a European population-based exposome cohort. BMJ Open. 2018 09 10; 8(9):e021311. PMID: 30206078.
    Citations: 11     Fields:    Translation:HumansCellsPHPublic Health
  13. Rubio M, Bustamante M, Hernandez-Ferrer C, Fernandez-Orth D, Pantano L, Sarria Y, Piqué-Borras M, Vellve K, Agramunt S, Carreras R, Estivill X, Gonzalez JR, Mayor A. Circulating miRNAs, isomiRs and small RNA clusters in human plasma and breast milk. PLoS One. 2018; 13(3):e0193527. PMID: 29505615.
    Citations: 13     Fields:    Translation:Humans
  14. Bustamante M, Hernandez-Ferrer C, Sarria Y, Harrison GI, Nonell L, Kang W, Friedländer MR, Estivill X, González JR, Nieuwenhuijsen M, Young AR. The acute effects of ultraviolet radiation on the blood transcriptome are independent of plasma 25OHD3. Environ Res. 2017 11; 159:239-248. PMID: 28822308.
    Citations: 3     Fields:    Translation:HumansCells
  15. Hernandez-Ferrer C, Ruiz-Arenas C, Beltran-Gomila A, González JR. MultiDataSet: an R package for encapsulating multiple data sets with application to omic data integration. BMC Bioinformatics. 2017 Jan 17; 18(1):36. PMID: 28095799.
    Citations: 5     Fields:    Translation:HumansCells
  16. Robinson O, Basagaña X, Agier L, de Castro M, Hernandez-Ferrer C, Gonzalez JR, Grimalt JO, Nieuwenhuijsen M, Sunyer J, Slama R, Vrijheid M. The Pregnancy Exposome: Multiple Environmental Exposures in the INMA-Sabadell Birth Cohort. Environ Sci Technol. 2015 Sep 01; 49(17):10632-41. PMID: 26168307.
    Citations: 22     Fields:    Translation:HumansPHPublic Health
  17. Hernandez-Ferrer C, Quintela Garcia I, Danielski K, Carracedo Á, Pérez-Jurado LA, González JR. affy2sv: an R package to pre-process Affymetrix CytoScan HD and 750K arrays for SNP, CNV, inversion and mosaicism calling. BMC Bioinformatics. 2015 May 20; 16:167. PMID: 25991004.
    Citations: 1     Fields:    Translation:Humans
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Funded by the NIH National Center for Advancing Translational Sciences through its Clinical and Translational Science Awards Program, grant number UL1TR002541.