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Sakellarios Ignatios Zairis, M.D.,Ph.D.


Columbia UniversityBAPhysics
Columbia UniversityMSBiomedical Engineering
Columbia UniversityPhDComputational Biology
Columbia UniversityMDMedicine

Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
  1. Anzalone AV, Zairis S, Lin AJ, Rabadan R, Cornish VW. Interrogation of Eukaryotic Stop Codon Readthrough Signals by in Vitro RNA Selection. Biochemistry. 2019 02 26; 58(8):1167-1178. PMID: 30698415.
    Citations: 7     Fields:    Translation:HumansCells
  2. Zairis S. Quantitative approaches to the genomics of clonal evolution. 2018. View Publication.
  3. Zairis S, Margalit DN, Royce TJ, Powlis WD, Tishler RB, Schoenfeld JD. Prospective analysis of radiation oncology image and plan-driven peer review for head and neck cancer. Head Neck. 2017 08; 39(8):1603-1608. PMID: 28513902.
    Citations:    Fields:    Translation:Humans
  4. Pappas K, Xu J, Zairis S, Resnick-Silverman L, Abate F, Steinbach N, Ozturk S, Saal LH, Su T, Cheung P, Schmidt H, Aaronson S, Hibshoosh H, Manfredi J, Rabadan R, Parsons R. p53 Maintains Baseline Expression of Multiple Tumor Suppressor Genes. Mol Cancer Res. 2017 08; 15(8):1051-1062. PMID: 28483946.
    Citations: 17     Fields:    Translation:HumansCells
  5. Abate F, da Silva-Almeida AC, Zairis S, Robles-Valero J, Couronne L, Khiabanian H, Quinn SA, Kim MY, Laginestra MA, Kim C, Fiore D, Bhagat G, Piris MA, Campo E, Lossos IS, Bernard OA, Inghirami G, Pileri S, Bustelo XR, Rabadan R, Ferrando AA, Palomero T. Activating mutations and translocations in the guanine exchange factor VAV1 in peripheral T-cell lymphomas. Proc Natl Acad Sci U S A. 2017 01 24; 114(4):764-769. PMID: 28062691.
    Citations: 24     Fields:    Translation:HumansCells
  6. Spina V, Khiabanian H, Messina M, Monti S, Cascione L, Bruscaggin A, Spaccarotella E, Holmes AB, Arcaini L, Lucioni M, Tabbò F, Zairis S, Diop F, Cerri M, Chiaretti S, Marasca R, Ponzoni M, Deaglio S, Ramponi A, Tiacci E, Pasqualucci L, Paulli M, Falini B, Inghirami G, Bertoni F, Foà R, Rabadan R, Gaidano G, Rossi D. The genetics of nodal marginal zone lymphoma. Blood. 2016 09 08; 128(10):1362-73. PMID: 27335277.
    Citations: 30     Fields:    Translation:Humans
  7. Wang J, Cazzato E, Ladewig E, Frattini V, Rosenbloom DI, Zairis S, Abate F, Liu Z, Elliott O, Shin YJ, Lee JK, Lee IH, Park WY, Eoli M, Blumberg AJ, Lasorella A, Nam DH, Finocchiaro G, Iavarone A, Rabadan R. Clonal evolution of glioblastoma under therapy. Nat Genet. 2016 07; 48(7):768-76. PMID: 27270107.
    Citations: 208     Fields:    Translation:HumansCells
  8. Anzalone AV, Lin AJ, Zairis S, Rabadan R, Cornish VW. Reprogramming eukaryotic translation with ligand-responsive synthetic RNA switches. Nat Methods. 2016 05; 13(5):453-8. PMID: 26999002.
    Citations: 10     Fields:    Translation:AnimalsCells
  9. Hill SM, Heiser LM, Cokelaer T, Unger M, Nesser NK, Carlin DE, Zhang Y, Sokolov A, Paull EO, Wong CK, Graim K, Bivol A, Wang H, Zhu F, Afsari B, Danilova LV, Favorov AV, Lee WS, Taylor D, Hu CW, Long BL, Noren DP, Bisberg AJ, Mills GB, Gray JW, Kellen M, Norman T, Friend S, Qutub AA, Fertig EJ, Guan Y, Song M, Stuart JM, Spellman PT, Koeppl H, Stolovitzky G, Saez-Rodriguez J, Mukherjee S. Inferring causal molecular networks: empirical assessment through a community-based effort. Nat Methods. 2016 Apr; 13(4):310-8. PMID: 26901648.
    Citations: 65     Fields:    Translation:HumansCells
  10. Abate F, Ambrosio MR, Mundo L, Laginestra MA, Fuligni F, Rossi M, Zairis S, Gazaneo S, De Falco G, Lazzi S, Bellan C, Rocca BJ, Amato T, Marasco E, Etebari M, Ogwang M, Calbi V, Ndede I, Patel K, Chumba D, Piccaluga PP, Pileri S, Leoncini L, Rabadan R. Distinct Viral and Mutational Spectrum of Endemic Burkitt Lymphoma. PLoS Pathog. 2015 Oct; 11(10):e1005158. PMID: 26468873.
    Citations: 35     Fields:    Translation:HumansCellsPHPublic Health
  11. Abate F, Zairis S, Ficarra E, Acquaviva A, Wiggins CH, Frattini V, Lasorella A, Iavarone A, Inghirami G, Rabadan R. Pegasus: a comprehensive annotation and prediction tool for detection of driver gene fusions in cancer. BMC Syst Biol. 2014 Sep 04; 8:97. PMID: 25183062.
    Citations: 30     Fields:    Translation:Humans
  12. Zairis S, Khiabanian H, Blumberg AJ, Rabadan R. Moduli spaces of phylogenetic trees describing tumor evolutionary patterns. Lecture Notes in Computer Science. 2014; 8609(1):528-539. View Publication.
  13. Gansell AR, Van de Meent JW, Zairis S, Wiggins CH. Stylistic clusters and the Syrian/South Syrian tradition of first-millennium BCE Levantine ivory carvings: a machine learning approach. Journal of Archaeological Science. 2014; 44(1):194-205. View Publication.
  14. Pavlopoulos E, Trifilieff P, Chevaleyre V, Fioriti L, Zairis S, Pagano A, Malleret G, Kandel ER. Neuralized1 activates CPEB3: a function for nonproteolytic ubiquitin in synaptic plasticity and memory storage. Cell. 2011 Dec 09; 147(6):1369-83. PMID: 22153079.
    Citations: 77     Fields:    Translation:AnimalsCells
  15. Lightman M, Thurkal J, Dwyer J, Grossman R, Kalmus P, Matone L, Rollins J, Zairis S, Marka S. Prospects of gravitational wave data mining and exploration via evolutionary computing. Journal of Physics: Conference Series. 2006; 32(1):58-65. View Publication.
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Funded by the NIH National Center for Advancing Translational Sciences through its Clinical and Translational Science Awards Program, grant number UL1TR002541.