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Xin Yu, Ph.D.

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Research
The research activities and funding listed below are automatically derived from NIH ExPORTER and other sources, which might result in incorrect or missing items. Faculty can login to make corrections and additions.
  1. S10MH124733 (ROSEN, BRUCE R) Sep 11, 2020 - Sep 10, 2021
    NIH
    Bridging the cellular and microvascular anatomy and functional dynamics: Upgrade the 14T horizontal MR for rodent and ex-vivo imaging
    Role: Co-Principal Investigator
  2. RF1NS113278 (YU, XIN) Aug 15, 2019 - Jul 31, 2022
    NIH
    Develop a multi-modal cross-scale fMRI platform with laminar-specific cellular recordings through multi-channel tapered photonic crystal fiber array
    Role: Principal Investigator
  3. R01MH111438 (KLEINFELD, DAVID) Sep 16, 2016 - Jun 30, 2021
    NIH
    Resting state connectivity: Biophysical basis for and improved fMRI measurements
    Role: Co-Investigator

Bibliographic
Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
  1. Sobczak F, He Y, Sejnowski TJ, Yu X. Predicting the fMRI Signal Fluctuation with Recurrent Neural Networks Trained on Vascular Network Dynamics. Cereb Cortex. 2021 Jan 05; 31(2):826-844. PMID: 32940658.
    Citations: 1     Fields:    
  2. Chen Y, Sobczak F, Pais-Roldán P, Schwarz C, Koretsky AP, Yu X. Mapping the Brain-Wide Network Effects by Optogenetic Activation of the Corpus Callosum. Cereb Cortex. 2020 Oct 01; 30(11):5885-5898. PMID: 32556241.
    Citations:    Fields:    
  3. Drew PJ, Mateo C, Turner KL, Yu X, Kleinfeld D. Ultra-slow Oscillations in fMRI and Resting-State Connectivity: Neuronal and Vascular Contributions and Technical Confounds. Neuron. 2020 09 09; 107(5):782-804. PMID: 32791040.
    Citations: 5     Fields:    Translation:HumansAnimals
  4. Pais-Roldán P, Takahashi K, Sobczak F, Chen Y, Zhao X, Zeng H, Jiang Y, Yu X. Indexing brain state-dependent pupil dynamics with simultaneous fMRI and optical fiber calcium recording. Proc Natl Acad Sci U S A. 2020 03 24; 117(12):6875-6882. PMID: 32139609.
    Citations: 8     Fields:    Translation:Animals
  5. Ovsepian SV, Jiang Y, Sardella TCP, Malekzadeh-Najafabadi J, Burton NC, Yu X, Ntziachristos V. Visualizing cortical response to optogenetic stimulation and sensory inputs using multispectral handheld optoacoustic imaging. Photoacoustics. 2020 Mar; 17:100153. PMID: 32154103.
    Citations: 4     
  6. Handwerker J, Pérez-Rodas M, Beyerlein M, Vincent F, Beck A, Freytag N, Yu X, Pohmann R, Anders J, Scheffler K. A CMOS NMR needle for probing brain physiology with high spatial and temporal resolution. Nat Methods. 2020 01; 17(1):64-67. PMID: 31768059.
    Citations: 1     Fields:    Translation:Animals
  7. Chen X, Sobczak F, Chen Y, Jiang Y, Qian C, Lu Z, Ayata C, Logothetis NK, Yu X. Mapping optogenetically-driven single-vessel fMRI with concurrent neuronal calcium recordings in the rat hippocampus. Nat Commun. 2019 11 20; 10(1):5239. PMID: 31748553.
    Citations: 4     Fields:    Translation:AnimalsCells
  8. He Y, Wang M, Yu X. High spatiotemporal vessel-specific hemodynamic mapping with multi-echo single-vessel fMRI. J Cereb Blood Flow Metab. 2020 10; 40(10):2098-2114. PMID: 31696765.
    Citations: 3     Fields:    Translation:Animals
  9. Chen Y, Pais-Roldan P, Chen X, Frosz MH, Yu X. MRI-guided robotic arm drives optogenetic fMRI with concurrent Ca2+ recording. Nat Commun. 2019 06 10; 10(1):2536. PMID: 31182714.
    Citations: 4     Fields:    Translation:Animals
  10. Pais-Roldán P, Edlow BL, Jiang Y, Stelzer J, Zou M, Yu X. Multimodal assessment of recovery from coma in a rat model of diffuse brainstem tegmentum injury. Neuroimage. 2019 04 01; 189:615-630. PMID: 30708105.
    Citations: 2     Fields:    Translation:Animals
  11. Pais-Roldán P, Biswal B, Scheffler K, Yu X. Identifying Respiration-Related Aliasing Artifacts in the Rodent Resting-State fMRI. Front Neurosci. 2018; 12:788. PMID: 30455623.
    Citations: 6     
  12. He Y, Wang M, Chen X, Pohmann R, Polimeni JR, Scheffler K, Rosen BR, Kleinfeld D, Yu X. Ultra-Slow Single-Vessel BOLD and CBV-Based fMRI Spatiotemporal Dynamics and Their Correlation with Neuronal Intracellular Calcium Signals. Neuron. 2018 02 21; 97(4):925-939.e5. PMID: 29398359.
    Citations: 26     Fields:    Translation:HumansAnimalsCells
  13. Wang M, He Y, Sejnowski TJ, Yu X. Brain-state dependent astrocytic Ca2+ signals are coupled to both positive and negative BOLD-fMRI signals. Proc Natl Acad Sci U S A. 2018 02 13; 115(7):E1647-E1656. PMID: 29382752.
    Citations: 26     Fields:    Translation:AnimalsCells
  14. Chung S, Jeong JH, Ko S, Yu X, Kim YH, Isaac JTR, Koretsky AP. Peripheral Sensory Deprivation Restores Critical-Period-like Plasticity to Adult Somatosensory Thalamocortical Inputs. Cell Rep. 2017 06 27; 19(13):2707-2717. PMID: 28658619.
    Citations: 8     Fields:    Translation:HumansAnimals
  15. Pais-Roldán P, Singh AP, Schulz H, Yu X. High magnetic field induced otolith fusion in the zebrafish larvae. Sci Rep. 2016 Apr 11; 6:24151. PMID: 27063288.
    Citations: 1     Fields:    Translation:AnimalsCells
  16. Yu X, He Y, Wang M, Merkle H, Dodd SJ, Silva AC, Koretsky AP. Sensory and optogenetically driven single-vessel fMRI. Nat Methods. 2016 Apr; 13(4):337-40. PMID: 26855362.
    Citations: 37     Fields:    Translation:Animals
  17. Yu X, Koretsky AP. Interhemispheric plasticity protects the deafferented somatosensory cortex from functional takeover after nerve injury. Brain Connect. 2014 Nov; 4(9):709-17. PMID: 25117691.
    Citations: 3     Fields:    Translation:Animals
  18. Qian C, Yu X, Pothayee N, Dodd S, Bouraoud N, Star R, Bennett K, Koretsky A. Live nephron imaging by MRI. Am J Physiol Renal Physiol. 2014 Nov 15; 307(10):F1162-8. PMID: 25186296.
    Citations: 12     Fields:    Translation:Animals
  19. Yu X, Qian C, Chen DY, Dodd SJ, Koretsky AP. Deciphering laminar-specific neural inputs with line-scanning fMRI. Nat Methods. 2014 Jan; 11(1):55-8. PMID: 24240320.
    Citations: 45     Fields:    Translation:AnimalsCells
  20. Qian C, Yu X, Chen DY, Dodd S, Bouraoud N, Pothayee N, Chen Y, Beeman S, Bennett K, Murphy-Boesch J, Koretsky A. Wireless amplified nuclear MR detector (WAND) for high-spatial-resolution MR imaging of internal organs: preclinical demonstration in a rodent model. Radiology. 2013 Jul; 268(1):228-36. PMID: 23392428.
    Citations: 20     Fields:    Translation:Animals
  21. Yu X, Chung S, Chen DY, Wang S, Dodd SJ, Walters JR, Isaac JT, Koretsky AP. Thalamocortical inputs show post-critical-period plasticity. Neuron. 2012 May 24; 74(4):731-42. PMID: 22632730.
    Citations: 30     Fields:    Translation:AnimalsCells
  22. Yu X, Glen D, Wang S, Dodd S, Hirano Y, Saad Z, Reynolds R, Silva AC, Koretsky AP. Direct imaging of macrovascular and microvascular contributions to BOLD fMRI in layers IV-V of the rat whisker-barrel cortex. Neuroimage. 2012 Jan 16; 59(2):1451-60. PMID: 21851857.
    Citations: 43     Fields:    Translation:Animals
  23. Yu X, Nieman BJ, Sudarov A, Szulc KU, Abdollahian DJ, Bhatia N, Lalwani AK, Joyner AL, Turnbull DH. Morphological and functional midbrain phenotypes in Fibroblast Growth Factor 17 mutant mice detected by Mn-enhanced MRI. Neuroimage. 2011 Jun 01; 56(3):1251-8. PMID: 21356319.
    Citations: 7     Fields:    Translation:Animals
  24. Yu X, Wang S, Chen DY, Dodd S, Goloshevsky A, Koretsky AP. 3D mapping of somatotopic reorganization with small animal functional MRI. Neuroimage. 2010 Jan 15; 49(2):1667-76. PMID: 19770051.
    Citations: 15     Fields:    Translation:Animals
  25. Yu X, Zou J, Babb JS, Johnson G, Sanes DH, Turnbull DH. Statistical mapping of sound-evoked activity in the mouse auditory midbrain using Mn-enhanced MRI. Neuroimage. 2008 Jan 01; 39(1):223-30. PMID: 17919926.
    Citations: 19     Fields:    Translation:Animals
  26. Yu X, Sanes DH, Aristizabal O, Wadghiri YZ, Turnbull DH. Large-scale reorganization of the tonotopic map in mouse auditory midbrain revealed by MRI. Proc Natl Acad Sci U S A. 2007 Jul 17; 104(29):12193-8. PMID: 17620614.
    Citations: 35     Fields:    Translation:Animals
  27. Deans AE, Wadghiri YZ, Bernas LM, Yu X, Rutt BK, Turnbull DH. Cellular MRI contrast via coexpression of transferrin receptor and ferritin. Magn Reson Med. 2006 Jul; 56(1):51-9. PMID: 16724301.
    Citations: 59     Fields:    Translation:HumansAnimalsCells
  28. Yu X, Wadghiri YZ, Sanes DH, Turnbull DH. In vivo auditory brain mapping in mice with Mn-enhanced MRI. Nat Neurosci. 2005 Jul; 8(7):961-8. PMID: 15924136.
    Citations: 104     Fields:    Translation:Animals
  29. Wadghiri YZ, Blind JA, Duan X, Moreno C, Yu X, Joyner AL, Turnbull DH. Manganese-enhanced magnetic resonance imaging (MEMRI) of mouse brain development. NMR Biomed. 2004 Dec; 17(8):613-9. PMID: 15761950.
    Citations: 33     Fields:    Translation:Animals
  30. Yu X, Mao X, Blake AD, Li WX, Chang SL. Morphine and endomorphins differentially regulate micro-opioid receptor mRNA in SHSY-5Y human neuroblastoma cells. J Pharmacol Exp Ther. 2003 Aug; 306(2):447-54. PMID: 12754318.
    Citations: 14     Fields:    Translation:HumansCells
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Funded by the NIH National Center for Advancing Translational Sciences through its Clinical and Translational Science Awards Program, grant number UL1TR002541.