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Brett K. Beaulieu-Jones, Ph.D.

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University of Pennsylvania, Perelman School of Medicine, Philadelphia, PAPh.D.09/2017Genomics and Computational Biology

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Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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  1. Ching T, Himmelstein DS, Beaulieu-Jones BK, Kalinin AA, Do BT, Way GP, Ferrero E, Agapow PM, Zietz M, Hoffman MM, Xie W, Rosen GL, Lengerich BJ, Israeli J, Lanchantin J, Woloszynek S, Carpenter AE, Shrikumar A, Xu J, Cofer EM, Lavender CA, Turaga SC, Alexandari AM, Lu Z, Harris DJ, DeCaprio D, Qi Y, Kundaje A, Peng Y, Wiley LK, Segler MHS, Boca SM, Swamidass SJ, Huang A, Gitter A, Greene CS. Opportunities and obstacles for deep learning in biology and medicine. J R Soc Interface. 2018 Apr; 15(141). PMID: 29618526.
    View in: PubMed
  2. Beaulieu-Jones BK, Lavage DR, Snyder JW, Moore JH, Pendergrass SA, Bauer CR. Characterizing and Managing Missing Structured Data in Electronic Health Records: Data Analysis. JMIR Med Inform. 2018 Feb 23; 6(1):e11. PMID: 29475824.
    View in: PubMed
  3. Beaulieu-Jones BK, Orzechowski P, Moore JH. Mapping Patient Trajectories using Longitudinal Extraction and Deep Learning in the MIMIC-III Critical Care Database. Pac Symp Biocomput. 2018; 23:123-132. PMID: 29218875.
    View in: PubMed
  4. Beaulieu-Jones BK, Greene CS. Reproducibility of computational workflows is automated using continuous analysis. Nat Biotechnol. 2017 04; 35(4):342-346. PMID: 28288103.
    View in: PubMed
  5. Beaulieu-Jones BK, Moore JH. MISSING DATA IMPUTATION IN THE ELECTRONIC HEALTH RECORD USING DEEPLY LEARNED AUTOENCODERS. Pac Symp Biocomput. 2017; 22:207-218. PMID: 27896976.
    View in: PubMed
  6. Beaulieu-Jones BK, Greene CS. Semi-supervised learning of the electronic health record for phenotype stratification. J Biomed Inform. 2016 12; 64:168-178. PMID: 27744022.
    View in: PubMed
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