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Curtis Huttenhower, Ph.D.

Co-Author

This page shows the publications co-authored by Curtis Huttenhower and Eric Franzosa.
Connection Strength

8.452
  1. Species-level functional profiling of metagenomes and metatranscriptomes. Nat Methods. 2018 11; 15(11):962-968.
    View in: PubMed
    Score: 0.807
  2. Identifying personal microbiomes using metagenomic codes. Proc Natl Acad Sci U S A. 2015 Jun 02; 112(22):E2930-8.
    View in: PubMed
    Score: 0.634
  3. Sequencing and beyond: integrating molecular 'omics' for microbial community profiling. Nat Rev Microbiol. 2015 Jun; 13(6):360-72.
    View in: PubMed
    Score: 0.632
  4. Relating the metatranscriptome and metagenome of the human gut. Proc Natl Acad Sci U S A. 2014 Jun 03; 111(22):E2329-38.
    View in: PubMed
    Score: 0.593
  5. A statistical model for describing and simulating microbial community profiles. PLoS Comput Biol. 2021 Sep; 17(9):e1008913.
    View in: PubMed
    Score: 0.246
  6. Statistical approaches for differential expression analysis in metatranscriptomics. Bioinformatics. 2021 07 12; 37(Suppl_1):i34-i41.
    View in: PubMed
    Score: 0.243
  7. Metatranscriptomics for the Human Microbiome and Microbial Community Functional Profiling. Annu Rev Biomed Data Sci. 2021 07 20; 4:279-311.
    View in: PubMed
    Score: 0.240
  8. A framework for microbiome science in public health. Nat Med. 2021 05; 27(5):766-774.
    View in: PubMed
    Score: 0.239
  9. Determinants of Staphylococcus aureus carriage in the developing infant nasal microbiome. Genome Biol. 2020 12 11; 21(1):301.
    View in: PubMed
    Score: 0.233
  10. Identification of Natural CRISPR Systems and Targets in the Human Microbiome. Cell Host Microbe. 2021 01 13; 29(1):94-106.e4.
    View in: PubMed
    Score: 0.233
  11. Strain-level epidemiology of microbial communities and the human microbiome. Genome Med. 2020 08 13; 12(1):71.
    View in: PubMed
    Score: 0.228
  12. Obese Individuals with and without Type 2 Diabetes Show Different Gut Microbial Functional Capacity and Composition. Cell Host Microbe. 2019 08 14; 26(2):252-264.e10.
    View in: PubMed
    Score: 0.213
  13. Predictive metabolomic profiling of microbial communities using amplicon or metagenomic sequences. Nat Commun. 2019 07 17; 10(1):3136.
    View in: PubMed
    Score: 0.212
  14. Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases. Nature. 2019 05; 569(7758):655-662.
    View in: PubMed
    Score: 0.210
  15. Author Correction: Gut microbiome structure and metabolic activity in inflammatory bowel disease. Nat Microbiol. 2019 May; 4(5):898.
    View in: PubMed
    Score: 0.209
  16. Gut microbiome structure and metabolic activity in inflammatory bowel disease. Nat Microbiol. 2019 02; 4(2):293-305.
    View in: PubMed
    Score: 0.203
  17. bioBakery: a meta'omic analysis environment. Bioinformatics. 2018 04 01; 34(7):1235-1237.
    View in: PubMed
    Score: 0.194
  18. Host genetic variation and its microbiome interactions within the Human Microbiome Project. Genome Med. 2018 01 29; 10(1):6.
    View in: PubMed
    Score: 0.191
  19. Dynamics of metatranscription in the inflammatory bowel disease gut microbiome. Nat Microbiol. 2018 03; 3(3):337-346.
    View in: PubMed
    Score: 0.191
  20. Alterations in oral bacterial communities are associated with risk factors for oral and oropharyngeal cancer. Sci Rep. 2017 12 15; 7(1):17686.
    View in: PubMed
    Score: 0.190
  21. Experimental design and quantitative analysis of microbial community multiomics. Genome Biol. 2017 11 30; 18(1):228.
    View in: PubMed
    Score: 0.189
  22. Erratum: Strains, functions and dynamics in the expanded Human Microbiome Project. Nature. 2017 11 09; 551(7679):256.
    View in: PubMed
    Score: 0.187
  23. Strains, functions and dynamics in the expanded Human Microbiome Project. Nature. 2017 10 05; 550(7674):61-66.
    View in: PubMed
    Score: 0.187
  24. Sub-clinical detection of gut microbial biomarkers of obesity and type 2 diabetes. Genome Med. 2016 Feb 17; 8(1):17.
    View in: PubMed
    Score: 0.167
  25. High-Specificity Targeted Functional Profiling in Microbial Communities with ShortBRED. PLoS Comput Biol. 2015 Dec; 11(12):e1004557.
    View in: PubMed
    Score: 0.165
  26. A reproducible approach to high-throughput biological data acquisition and integration. PeerJ. 2015; 3:e791.
    View in: PubMed
    Score: 0.157
  27. Advancing the microbiome research community. Cell. 2014 Oct 09; 159(2):227-30.
    View in: PubMed
    Score: 0.152
  28. Functional profiling of the gut microbiome in disease-associated inflammation. Genome Med. 2013; 5(7):65.
    View in: PubMed
    Score: 0.140
  29. A bacterial bile acid metabolite modulates Treg activity through the nuclear hormone receptor NR4A1. Cell Host Microbe. 2021 09 08; 29(9):1366-1377.e9.
    View in: PubMed
    Score: 0.061
  30. Dietary fiber intake, the gut microbiome, and chronic systemic inflammation in a cohort of adult men. Genome Med. 2021 06 17; 13(1):102.
    View in: PubMed
    Score: 0.060
  31. Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3. Elife. 2021 05 04; 10.
    View in: PubMed
    Score: 0.060
  32. Global chemical effects of the microbiome include new bile-acid conjugations. Nature. 2020 03; 579(7797):123-129.
    View in: PubMed
    Score: 0.055
  33. Growth effects of N-acylethanolamines on gut bacteria reflect altered bacterial abundances in inflammatory bowel disease. Nat Microbiol. 2020 03; 5(3):486-497.
    View in: PubMed
    Score: 0.055
  34. Bacteroides-Derived Sphingolipids Are Critical for Maintaining Intestinal Homeostasis and Symbiosis. . 2019 05 08; 25(5):668-680.e7.
    View in: PubMed
    Score: 0.052
  35. Comparative genomics and genome biology of Campylobacter showae. Emerg Microbes Infect. 2019; 8(1):827-840.
    View in: PubMed
    Score: 0.051
  36. The human gut microbiome in early-onset type 1 diabetes from the TEDDY study. Nature. 2018 10; 562(7728):589-594.
    View in: PubMed
    Score: 0.050
  37. Compositional and Temporal Changes in the Gut Microbiome of Pediatric Ulcerative Colitis Patients Are Linked to Disease Course. . 2018 10 10; 24(4):600-610.e4.
    View in: PubMed
    Score: 0.050
  38. Fluoride Depletes Acidogenic Taxa in Oral but Not Gut Microbial Communities in Mice. mSystems. 2017 Jul-Aug; 2(4).
    View in: PubMed
    Score: 0.046
  39. Indoleacrylic Acid Produced by Commensal Peptostreptococcus Species Suppresses Inflammation. . 2017 Jul 12; 22(1):25-37.e6.
    View in: PubMed
    Score: 0.046
  40. Linking the Human Gut Microbiome to Inflammatory Cytokine Production Capacity. Cell. 2016 12 15; 167(7):1897.
    View in: PubMed
    Score: 0.044
  41. A conserved bacterial protein induces pancreatic beta cell expansion during zebrafish development. Elife. 2016 12 13; 5.
    View in: PubMed
    Score: 0.044
  42. Linking the Human Gut Microbiome to Inflammatory Cytokine Production Capacity. Cell. 2016 11 03; 167(4):1125-1136.e8.
    View in: PubMed
    Score: 0.044
  43. Natural history of the infant gut microbiome and impact of antibiotic treatment on bacterial strain diversity and stability. Sci Transl Med. 2016 06 15; 8(343):343ra81.
    View in: PubMed
    Score: 0.043
  44. Variation in Microbiome LPS Immunogenicity Contributes to Autoimmunity in Humans. Cell. 2016 Jun 02; 165(6):1551.
    View in: PubMed
    Score: 0.043
  45. Variation in Microbiome LPS Immunogenicity Contributes to Autoimmunity in Humans. Cell. 2016 May 05; 165(4):842-53.
    View in: PubMed
    Score: 0.042
  46. MetaPhlAn2 for enhanced metagenomic taxonomic profiling. Nat Methods. 2015 Oct; 12(10):902-3.
    View in: PubMed
    Score: 0.041
  47. Biogeography of the intestinal mucosal and lumenal microbiome in the rhesus macaque. . 2015 Mar 11; 17(3):385-391.
    View in: PubMed
    Score: 0.039
  48. The dynamics of the human infant gut microbiome in development and in progression toward type 1 diabetes. . 2015 Feb 11; 17(2):260-73.
    View in: PubMed
    Score: 0.039
Connection Strength
The connection strength for co-authors is the sum of the scores for each of their shared publications.

Publication scores are based on many factors, including how long ago they were written and whether the person is a first or senior author.
Funded by the NIH National Center for Advancing Translational Sciences through its Clinical and Translational Science Awards Program, grant number UL1TR002541.