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Suheyla Cetin Karayumak, Ph.D.

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  1. (Suheyla Cetin Karayumak) Jan 15, 2021 - Dec 31, 2022
    BBRF NARSAD Young Investigator Award
    Association of prenatal cannabis exposure and psychotic experiences in adolescents: a harmonized multi-site MRI study
    Role Description: The main goal of this proposal is to investigate the effects of prenatal cannabis exposure on the early onset of psychosis in adolescents.
    Role: PI
  2. (Suheyla Cetin Karayumak) Jan 1, 2020 - Dec 31, 2020
    BWH Program for Interdisciplinary Neurosciences
    Prenatal Drug Exposure and Its Impact On Brain Development in Adolescence
    Role: PI
  3. R01MH119222 (RATHI, YOGESH) Apr 1, 2019 - Jan 31, 2024
    Harmonizing multi-site diffusion MRI acquisitions for neuroscientific analysis across ages and brain disorders
    Role: Co-Investigator

Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
  1. Seitz J, Cetin-Karayumak S, Lyall A, Pasternak O, Baxi M, Vangel M, Pearlson G, Tamminga C, Sweeney J, Clementz B, Schretlen D, Viher PV, Stegmayer K, Walther S, Lee J, Crow T, James A, Voineskos A, Buchanan RW, Szeszko PR, Malhotra A, Keshavan M, Koerte IK, Shenton ME, Rathi Y, Kubicki M. Investigating Sexual Dimorphism of Human White Matter in a Harmonized, Multisite Diffusion Magnetic Resonance Imaging Study. Cereb Cortex. 2021 Jan 01; 31(1):201-212. PMID: 32851404.
    Citations: 1     Fields:    
  2. Baxi M, Di Biase MA, Lyall AE, Cetin-Karayumak S, Seitz J, Ning L, Makris N, Rosene D, Kubicki M, Rathi Y. Quantifying Genetic and Environmental Influence on Gray Matter Microstructure Using Diffusion MRI. Cereb Cortex. 2020 Nov 03; 30(12):6191-6205. PMID: 32676671.
    Citations:    Fields:    
  3. Hegde RR, Kelly S, Lutz O, Guimond S, Karayumak SC, Mike L, Mesholam-Gately RI, Pasternak O, Kubicki M, Eack SM, Keshavan MS. Association of white matter microstructure and extracellular free-water with cognitive performance in the early course of schizophrenia. Psychiatry Res Neuroimaging. 2020 Aug 14; 305:111159. PMID: 32919288.
    Citations: 1     Fields:    
  4. Ning L, Bonet-Carne E, Grussu F, Sepehrband F, Kaden E, Veraart J, Blumberg SB, Khoo CS, Palombo M, Kokkinos I, Alexander DC, Coll-Font J, Scherrer B, Warfield SK, Karayumak SC, Rathi Y, Koppers S, Weninger L, Ebert J, Merhof D, Moyer D, Pietsch M, Christiaens D, Gomes Teixeira RA, Tournier JD, Schilling KG, Huo Y, Nath V, Hansen C, Blaber J, Landman BA, Zhylka A, Pluim JPW, Parker G, Rudrapatna U, Evans J, Charron C, Jones DK, Tax CMW. Cross-scanner and cross-protocol multi-shell diffusion MRI data harmonization: Algorithms and results. Neuroimage. 2020 11 01; 221:117128. PMID: 32673745.
    Citations: 1     Fields:    Translation:Humans
  5. Zhang F, Cetin Karayumak S, Hoffmann N, Rathi Y, Golby AJ, O'Donnell LJ. Deep white matter analysis (DeepWMA): Fast and consistent tractography segmentation. Med Image Anal. 2020 10; 65:101761. PMID: 32622304.
    Citations:    Fields:    
  6. Breithaupt L, Chunga-Iturry N, Lyall AE, Cetin-Karayumak S, Becker KR, Thomas JJ, Slattery M, Makris N, Plessow F, Pasternak O, Holsen LM, Kubicki M, Misra M, Lawson EA, Eddy KT. Developmental stage-dependent relationships between ghrelin levels and hippocampal white matter connections in low-weight anorexia nervosa and atypical anorexia nervosa. Psychoneuroendocrinology. 2020 09; 119:104722. PMID: 32512249.
    Citations: 1     Fields:    
  7. Di Biase MA, Katabi G, Piontkewitz Y, Cetin-Karayumak S, Weiner I, Pasternak O. Increased extracellular free-water in adult male rats following in utero exposure to maternal immune activation. Brain Behav Immun. 2020 01; 83:283-287. PMID: 31521731.
    Citations: 5     Fields:    Translation:AnimalsCells
  8. Cetin-Karayumak S, Di Biase MA, Chunga N, Reid B, Somes N, Lyall AE, Kelly S, Solgun B, Pasternak O, Vangel M, Pearlson G, Tamminga C, Sweeney JA, Clementz B, Schretlen D, Viher PV, Stegmayer K, Walther S, Lee J, Crow T, James A, Voineskos A, Buchanan RW, Szeszko PR, Malhotra AK, Hegde R, McCarley R, Keshavan M, Shenton M, Rathi Y, Kubicki M. White matter abnormalities across the lifespan of schizophrenia: a harmonized multi-site diffusion MRI study. Mol Psychiatry. 2020 12; 25(12):3208-3219. PMID: 31511636.
    Citations: 12     Fields:    
  9. F Zhang, N Hoffmann, SC Karayumak, Y Rathi, AJ Golby, LJ O’Donnell. Deep White Matter Analysis: Fast, Consistent Tractography Segmentation Across Populations and dMRI Acquisitions. International Conference on Medical Image Computing and Computer-Assisted Intervention. 2019; 599-608.
  10. Cetin-Karayumak Suheyla, Chunga Natalia, Somes Nathaniel, Reid Benjamin, Di Biase Maria, Lyall Amanda, Kelly Sinead, Pasternak Ofer, Vangel Mark, Viher Petra Verena, Walther Sebastian, Lee Jungsun, Crow Tim, James Anthony, Voineskos Aristotle, Szeszko Philip R., Malhotra Anil, McCarley Robert*, Keshavan Matcheri, Shenton Martha, Rathi Yogesh , Kubicki Marek. Abnormal development, faulty maturation or accelerated aging? White matter at the center stage of schizophrenia revisited. Schizophrenia International Research Society, Orlando, USA, 2019 (oral presentation). 2019.
  11. Cetin-Karayumak Suheyla, Kubicki Marek, Rathi Yogesh. Multi-site diffusion MRI harmonization in the presence of gross pathology: How far can we push?. ISMRM. 2019.
  12. Baxi Madhura, Cetin-Karayumak Suheyla, Richardson D, Papadimitriou G, Karmacharya S, Makris N, Moore T, Rosene D, Kubicki Marek, Rathi Yogesh. Validation of Diffusion Imaging Measure in Gray Matter using histology in macaque. ISMRM. 2019.
  13. Ning Lipeng, Bonet-Carne Elisenda, Grussu Francesco, Sepehrband Farshid, Kaden Enrico, Veraart Jelle, Blumberg Stefano, Khoo Can Son, Palombo Marco, Coll-Font Jaume, Scherrer Benoit, Warfield Simon, Cetin-Karayumak Suheyla et al. Cross-scanner and cross-protocol harmonisation of multi-shell diffusion MRI data: open challenge and evaluation results. ISMRM 27th Scientific Meeting, Montreal, Canada, 2019. 2019.
  14. Cetin-Karayumak Suheyla, Chunga Natalia, Reid Benjamin, Somes Nathaniel, Voineskos Aristotle, Szeszko Philip, Malhotra Anil, Shenton Martha, Kubicki Marek, Rathi Yogesh. Harmonization of retrospective diffusion MRI data: an essential tool for multi-site studies. Organization for Human Brain Mapping (OHBM). 2019.
  15. Cetin-Karayumak Suheyla, Di Biase Maria, Chunga Natalia, Somes Nathaniel, Reid Benjamin, Lyall Amanda, Kelly Sinead, Pasternak Ofer, Vangel Mark, Viher Petra, Walther Sebastian, Lee Jungsun, Crow Tim, James Anthony, Voineskos Aristotle, Szeszko Philip, Malhotra Anil, McCarley Robert, Keshavan Matcheri, Shenton Martha, Kubicki Marek, Rathi Yogesh. Sex differences in cerebral white matter across the lifespan. Organization for Human Brain Mapping (OHBM). 2019.
  16. Baxi Madhura, Cetin-Karayumak Suheyla, et al. Connecting histology derived intracellular volume fraction in gray matter with diffusion MRI in rhesus monkeys. Gordon Conference. 2019.
  17. Suheyla Cetin-Karayumak, Amanda Lyall, Ofer Pasternak, Fan Zhang2, Sinead Kelly, Godfrey Pearlson, Carol Tamminga, John Sweeney, Brett Clementz, David Schretlen,Katharina Stegmayer, Sebastian Walther, Jungsun Lee, Tim Crow, Anthony James, Aristotle Voineskos, Robert W. Buchanan, Philip R. Szeszko, Anil Malhotra, Matcheri Keshavan, Martha Shenton, Yogesh Rathi, Marek Kubicki. The Evolution of Cellular and Extracellular White Matter Pathologies In Schizophrenia: A Multi-Site, Harmonized, Free Water Imaging Study. ACNP. 2019.
  18. Lipeng Ning, Elisenda Bonet-Carne, Francesco Grussu, Farshid Sepehrband, Enrico Kaden, Jelle Veraart, Stefano B Blumberg, Can Son Khoo, Marco Palombo, Jaume Coll-Font, Benoit Scherrer, Simon K Warfield, Suheyla Cetin Karayumak, Yogesh Rathi, Simon Koppers, Leon Weninger, Julia Ebert, Dorit Merhof, Daniel Moyer, Maximilian Pietsch, Daan Christiaens, Rui Teixeira, Jacques-Donald Tournier, Andrey Zhylka, Josien Pluim, Greg Parker, Umesh Rudrapatna, John Evans, Cyril Charron, Derek K Jones, Chantal WM Tax. Muti-shell Diffusion MRI Harmonisation and Enhancement Challenge (MUSHAC): Progress and Results. International Conference on Medical Image Computing and Computer-Assisted Intervention. 2018; 217-224.
  19. Suheyla Cetin Karayumak, Marek Kubicki, Yogesh Rathi. International Conference on Medical Image Computing and Computer-Assisted Intervention. Harmonizing Diffusion MRI Data Across Magnetic Field Strengths. 2018.
  20. Cetin Karayumak S, Bouix S, Ning L, James A, Crow T, Shenton M, Kubicki M, Rathi Y. Retrospective harmonization of multi-site diffusion MRI data acquired with different acquisition parameters. Neuroimage. 2019 01 01; 184:180-200. PMID: 30205206.
    Citations: 21     Fields:    Translation:Humans
  21. Cetin Karayumak S, Özarslan E, Unal G. Asymmetric Orientation Distribution Functions (AODFs) revealing intravoxel geometry in diffusion MRI. Magn Reson Imaging. 2018 06; 49:145-158. PMID: 29550369.
    Citations: 3     Fields:    Translation:Humans
  22. Cetin-Karayumak Suheyla, Kubicki Marek, Rathi Yogesh. 7T Diffusion MRI data quality from 3T scanner data. ISMRM 26th Scientific Meeting,. 2018.
  23. Suheyla Cetin, Berkin Bilgic, Audrey Fan, Samantha Holdsworth, Gozde Unal. Vessel orientation constrained quantitative susceptibility mapping (QSM) reconstruction. nternational Conference on Medical Image Computing and Computer-Assisted Intervention. 2016.
  24. Cetin Karayumak, Suheyla . Modeling of tubular structures and fibers in in vivo data: revealing asymmetry in human vasculature and white matter fiber tracts. 2016.
  25. Efe Ilicak, Suheyla Cetin, Emine Ulku Saritas, Gozde Unal. Adaptive reconstruction for vessel preservation in unenhanced MR angiography. 2016.
  26. Ilicak E, Cetin S, Bulut E, Oguz KK, Saritas EU, Unal G, Çukur T. Targeted vessel reconstruction in non-contrast-enhanced steady-state free precession angiography. NMR Biomed. 2016 May; 29(5):532-44. PMID: 26854004.
    Citations: 2     Fields:    Translation:Humans
  27. Suheyla Cetin, Evren Ozarslan, Gozde Unal. Elucidating intravoxel geometry in diffusion-MRI: asymmetric orientation distribution functions (AODFs) revealed by a cone model. International Conference on Medical Image Computing and Computer-Assisted Intervention. 2015; 231-238.
  28. Cetin S, Unal G. A higher-order tensor vessel tractography for segmentation of vascular structures. IEEE Trans Med Imaging. 2015 Oct; 34(10):2172-85. PMID: 25910058.
    Citations: 2     Fields:    Translation:Humans
  29. Cetin Suheyla, Fan Audrey, Bilgic Berkin, Setsompop Kevin, Unal Gozde. Semi-automated visualization and segmentation of cerebral veins from QSM. (ISMRM abstract merit award - magna cum laude). ISMRM, 23rd Scientific Meeting. 2015.
  30. Suheyla Cetin, Gozde Unal. Higher order tensor-based segmentation and n-furcation modeling of vascular structures. 2014.
  31. Kirisli HA, Schaap M, Metz CT, Dharampal AS, Meijboom WB, Papadopoulou SL, Dedic A, Nieman K, de Graaf MA, Meijs MF, Cramer MJ, Broersen A, Cetin S, Eslami A, Flórez-Valencia L, Lor KL, Matuszewski B, Melki I, Mohr B, Oksüz I, Shahzad R, Wang C, Kitslaar PH, Unal G, Katouzian A, Örkisz M, Chen CM, Precioso F, Najman L, Masood S, Ünay D, van Vliet L, Moreno R, Goldenberg R, Vuçini E, Krestin GP, Niessen WJ, van Walsum T. Standardized evaluation framework for evaluating coronary artery stenosis detection, stenosis quantification and lumen segmentation algorithms in computed tomography angiography. Med Image Anal. 2013 Dec; 17(8):859-76. PMID: 23837963.
    Citations: 21     Fields:    Translation:Humans
  32. Cetin S, Demir A, Yezzi A, Degertekin M, Unal G. Vessel tractography using an intensity based tensor model with branch detection. IEEE Trans Med Imaging. 2013 Feb; 32(2):348-63. PMID: 23193307.
    Citations: 3     Fields:    Translation:Humans
  33. Suheyla Cetin,Muzaffer Degertekin, Gozde Unal. An automatic branch and stenoses detection in computed tomography angiography. 2012; 582-585.
  34. Suheyla Cetin, Gozde Unal. Automatic detection of coronary artery stenosis in CTA based on vessel intensity and geometric features. Proc. of MICCAI Workshop” 3D Cardiovascular Imaging: a MICCAI segmentation Challenge. 2012.
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Funded by the NIH National Center for Advancing Translational Sciences through its Clinical and Translational Science Awards Program, grant number UL1TR002541.