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Ioannis Vlachos, Ph.D.

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Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
  1. Fotiadis A, Vlachos I, Kugiumtzis D. Detecting Nonlinear Interactions in Complex Systems: Application in Financial Markets. Entropy (Basel). 2023 Feb 17; 25(2). PMID: 36832737; PMCID: PMC9954853.
  2. Christofides A, Katopodi XL, Cao C, Karagkouni D, Aliazis K, Yenyuwadee S, Aksoylar HI, Pal R, Mahmoud MAA, Strauss L, Tijaro-Ovalle NM, Boon L, Asara J, Vlachos IS, Patsoukis N, Boussiotis VA. SHP-2 and PD-1-SHP-2 signaling regulate myeloid cell differentiation and antitumor responses. Nat Immunol. 2023 01; 24(1):55-68. PMID: 36581713; PMCID: PMC9810534.
    Citations:    Fields:    Translation:AnimalsCells
  3. Cho Y, Bukong TN, Tornai D, Babuta M, Vlachos IS, Kanata E, Catalano D, Szabo G. Neutrophil extracellular traps contribute to liver damage and increase defective low-density neutrophils in alcohol-associated hepatitis. J Hepatol. 2023 01; 78(1):28-44. PMID: 36063965.
    Citations:    Fields:    Translation:AnimalsCells
  4. Theocharidis G, Rahmani S, Lee S, Li Z, Lobao A, Kounas K, Katopodi XL, Wang P, Moon S, Vlachos IS, Niewczas M, Mooney D, Veves A. Murine macrophages or their secretome delivered in alginate dressings enhance impaired wound healing in diabetic mice. Biomaterials. 2022 09; 288:121692. PMID: 35934520; PMCID: PMC9977170.
    Citations: 2     Fields:    Translation:AnimalsCells
  5. Theocharidis G, Yuk H, Roh H, Wang L, Mezghani I, Wu J, Kafanas A, Contreras M, Sumpio B, Li Z, Wang E, Chen L, Guo CF, Jayaswal N, Katopodi XL, Kalavros N, Nabzdyk CS, Vlachos IS, Veves A, Zhao X. A strain-programmed patch for the healing of diabetic wounds. Nat Biomed Eng. 2022 10; 6(10):1118-1133. PMID: 35788686.
    Citations:    Fields:    
  6. Laliotis GI, Chavdoula E, Paraskevopoulou MD, Kaba A, La Ferlita A, Singh S, Anastas V, Nair KA, Orlacchio A, Taraslia V, Vlachos I, Capece M, Hatzigeorgiou A, Palmieri D, Tsatsanis C, Alaimo S, Sehgal L, Carbone DP, Coppola V, Tsichlis PN. Retraction Note: AKT3-mediated IWS1 phosphorylation promotes the proliferation of EGFR-mutant lung adenocarcinomas through cell cycle-regulated U2AF2 RNA splicing. Nat Commun. 2022 Jun 28; 13(1):3711. PMID: 35764644; PMCID: PMC9245574.
    Citations:    Fields:    
  7. Morgan SL, Naderi P, Koler K, Pita-Juarez Y, Prokopenko D, Vlachos IS, Tanzi RE, Bertram L, Hide WA. Most Pathways Can Be Related to the Pathogenesis of Alzheimer's Disease. Front Aging Neurosci. 2022; 14:846902. PMID: 35813951; PMCID: PMC9263183.
  8. Baker AR, Miliotis C, Ramírez-Moya J, Marc T, Vlachos IS, Santisteban P, Slack FJ. Transcriptome Profiling of ADAR1 Targets in Triple-Negative Breast Cancer Cells Reveals Mechanisms for Regulating Growth and Invasion. Mol Cancer Res. 2022 06 03; 20(6):960-971. PMID: 35247916; PMCID: PMC9177724.
    Citations: 1     Fields:    Translation:HumansCells
  9. Su S, Katopodi XL, Pita-Juarez YH, Maverakis E, Vlachos IS, Adamopoulos IE. Serine and arginine rich splicing factor 1 deficiency alters pathways involved in IL-17A expression and is implicated in human psoriasis. Clin Immunol. 2022 07; 240:109041. PMID: 35613697.
    Citations:    Fields:    Translation:HumansAnimalsCells
  10. Vlachos I, Kugiumtzis D, Paluš M. Phase-based causality analysis with partial mutual information from mixed embedding. Chaos. 2022 May; 32(5):053111. PMID: 35649985.
    Citations:    Fields:    Translation:Humans
  11. Chaudhary U, Vlachos I, Zimmermann JB, Espinosa A, Tonin A, Jaramillo-Gonzalez A, Khalili-Ardali M, Topka H, Lehmberg J, Friehs GM, Woodtli A, Donoghue JP, Birbaumer N. Spelling interface using intracortical signals in a completely locked-in patient enabled via auditory neurofeedback training. Nat Commun. 2022 03 22; 13(1):1236. PMID: 35318316; PMCID: PMC8941070.
    Citations: 1     Fields:    Translation:Humans
  12. Wang P, Theocharidis G, Vlachos IS, Kounas K, Lobao A, Shu B, Wu B, Xie J, Hu Z, Qi S, Tang B, Zhu J, Veves A. Exosomes Derived from Epidermal Stem Cells Improve Diabetic Wound Healing. J Invest Dermatol. 2022 09; 142(9):2508-2517.e13. PMID: 35181300.
    Citations: 2     Fields:    
  13. Skoufos G, Almodaresi F, Zakeri M, Paulson JN, Patro R, Hatzigeorgiou AG, Vlachos IS. AGAMEMNON: an Accurate metaGenomics And MEtatranscriptoMics quaNtificatiON analysis suite. Genome Biol. 2022 01 31; 23(1):39. PMID: 35101114; PMCID: PMC8802518.
    Citations:    Fields:    
  14. Theocharidis G, Thomas BE, Sarkar D, Mumme HL, Pilcher WJR, Dwivedi B, Sandoval-Schaefer T, Sîrbulescu RF, Kafanas A, Mezghani I, Wang P, Lobao A, Vlachos IS, Dash B, Hsia HC, Horsley V, Bhasin SS, Veves A, Bhasin M. Single cell transcriptomic landscape of diabetic foot ulcers. Nat Commun. 2022 01 10; 13(1):181. PMID: 35013299; PMCID: PMC8748704.
    Citations: 5     Fields:    Translation:HumansCells
  15. Kavakiotis I, Alexiou A, Tastsoglou S, Vlachos IS, Hatzigeorgiou AG. DIANA-miTED: a microRNA tissue expression database. Nucleic Acids Res. 2022 01 07; 50(D1):D1055-D1061. PMID: 34469540; PMCID: PMC8728140.
    Citations: 1     Fields:    Translation:HumansCells
  16. Vlachos I, Kugiumtzis D, Tsalikakis DG, Kimiskidis VK. TMS-induced brain connectivity modulation in Genetic Generalized Epilepsy. Clin Neurophysiol. 2022 01; 133:83-93. PMID: 34814019.
    Citations:    Fields:    Translation:Humans
  17. Hakim A, Moll M, Brancale J, Liu J, Lasky-Su JA, Silverman EK, Vilarinho S, Jiang ZG, Pita-Juárez YH, Vlachos IS, Zhang X, Åberg F, Afdhal NH, Hobbs BD, Cho MH. Genetic Variation in the Mitochondrial Glycerol-3-Phosphate Acyltransferase Is Associated With Liver Injury. Hepatology. 2021 12; 74(6):3394-3408. PMID: 34216018; PMCID: PMC8639615.
    Citations:    Fields:    Translation:HumansCells
  18. Golemati S, Yanni A, Tsiaparas NN, Lechareas S, Vlachos IS, Cokkinos DD, Krokidis M, Nikita KS, Perrea D, Chatziioannou A. CurveletTransform-Based Texture Analysis of Carotid B-mode Ultrasound Images in Asymptomatic Men With Moderate and Severe Stenoses: A Preliminary Clinical Study. Ultrasound Med Biol. 2022 01; 48(1):78-90. PMID: 34666918.
    Citations:    Fields:    Translation:Humans
  19. Laliotis GI, Chavdoula E, Paraskevopoulou MD, Kaba A, La Ferlita A, Singh S, Anastas V, Nair KA, Orlacchio A, Taraslia V, Vlachos I, Capece M, Hatzigeorgiou A, Palmieri D, Tsatsanis C, Alaimo S, Sehgal L, Carbone DP, Coppola V, Tsichlis PN. AKT3-mediated IWS1 phosphorylation promotes the proliferation of EGFR-mutant lung adenocarcinomas through cell cycle-regulated U2AF2 RNA splicing. Nat Commun. 2021 07 30; 12(1):4624. PMID: 34330897; PMCID: PMC8324843.
    Citations: 4     Fields:    Translation:HumansAnimalsCells
  20. Delorey TM, Ziegler CGK, Heimberg G, Normand R, Yang Y, Segerstolpe Å, Abbondanza D, Fleming SJ, Subramanian A, Montoro DT, Jagadeesh KA, Dey KK, Sen P, Slyper M, Pita-Juárez YH, Phillips D, Biermann J, Bloom-Ackermann Z, Barkas N, Ganna A, Gomez J, Melms JC, Katsyv I, Normandin E, Naderi P, Popov YV, Raju SS, Niezen S, Tsai LT, Siddle KJ, Sud M, Tran VM, Vellarikkal SK, Wang Y, Amir-Zilberstein L, Atri DS, Beechem J, Brook OR, Chen J, Divakar P, Dorceus P, Engreitz JM, Essene A, Fitzgerald DM, Fropf R, Gazal S, Gould J, Grzyb J, Harvey T, Hecht J, Hether T, Jané-Valbuena J, Leney-Greene M, Ma H, McCabe C, McLoughlin DE, Miller EM, Muus C, Niemi M, Padera R, Pan L, Pant D, Pe'er C, Pfiffner-Borges J, Pinto CJ, Plaisted J, Reeves J, Ross M, Rudy M, Rueckert EH, Siciliano M, Sturm A, Todres E, Waghray A, Warren S, Zhang S, Zollinger DR, Cosimi L, Gupta RM, Hacohen N, Hibshoosh H, Hide W, Price AL, Rajagopal J, Tata PR, Riedel S, Szabo G, Tickle TL, Ellinor PT, Hung D, Sabeti PC, Novak R, Rogers R, Ingber DE, Jiang ZG, Juric D, Babadi M, Farhi SL, Izar B, Stone JR, Vlachos IS, Solomon IH, Ashenberg O, Porter CBM, Li B, Shalek AK, Villani AC, Rozenblatt-Rosen O, Regev A. COVID-19 tissue atlases reveal SARS-CoV-2 pathology and cellular targets. Nature. 2021 07; 595(7865):107-113. PMID: 33915569; PMCID: PMC8919505.
    Citations: 104     Fields:    Translation:HumansCells
  21. Prodromidou K, Vlachos IS, Gaitanou M, Kouroupi G, Hatzigeorgiou AG, Matsas R. MicroRNA-934 is a novel primate-specific small non-coding RNA with neurogenic function during early development. Elife. 2020 05 27; 9. PMID: 32459171; PMCID: PMC7295570.
    Citations: 4     Fields:    Translation:HumansCells
  22. Mastroleon I, Korou LM, Pergialiotis V, Vlachos IS, Sarlanis H, Konstantopoulos P, Pikoulis E, Perrea DN, Kavantzas N. Metabolic Response of Adult Male Offspring Rats to Prenatal Caffeine Exposure. Cureus. 2020 Feb 16; 12(2):e7006. PMID: 32206470; PMCID: PMC7077745.
  23. Desvignes T, Loher P, Eilbeck K, Ma J, Urgese G, Fromm B, Sydes J, Aparicio-Puerta E, Barrera V, Espín R, Thibord F, Bofill-De Ros X, Londin E, Telonis AG, Ficarra E, Friedländer MR, Postlethwait JH, Rigoutsos I, Hackenberg M, Vlachos IS, Halushka MK, Pantano L. Unification of miRNA and isomiR research: the mirGFF3 format and the mirtop API. Bioinformatics. 2020 02 01; 36(3):698-703. PMID: 31504201.
    Citations: 20     Fields:    Translation:Cells
  24. Handzlik JE, Tastsoglou S, Vlachos IS, Hatzigeorgiou AG. Manatee: detection and quantification of small non-coding RNAs from next-generation sequencing data. Sci Rep. 2020 01 20; 10(1):705. PMID: 31959833.
    Citations: 5     Fields:    Translation:HumansCells
  25. Eismann J, Heng YJ, Waldschmidt JM, Vlachos IS, Gray KP, Matulonis UA, Konstantinopoulos PA, Murphy CJ, Nabavi S, Wulf GM. Transcriptome analysis reveals overlap in fusion genes in a phase I clinical cohort of TNBC and HGSOC patients treated with buparlisib and olaparib. J Cancer Res Clin Oncol. 2020 Feb; 146(2):503-514. PMID: 31745703; PMCID: PMC6985087.
    Citations: 1     Fields:    Translation:Humans
  26. Fostira F, Kostantopoulou I, Apostolou P, Papamentzelopoulou MS, Papadimitriou C, Faliakou E, Christodoulou C, Boukovinas I, Razis E, Tryfonopoulos D, Barbounis V, Vagena A, Vlachos IS, Kalfakakou D, Fountzilas G, Yannoukakos D. One in three highly selected Greek patients with breast cancer carries a loss-of-function variant in a cancer susceptibility gene. J Med Genet. 2020 01; 57(1):53-61. PMID: 31300551; PMCID: PMC6929701.
    Citations: 10     Fields:    Translation:HumansCells
  27. Kotoula V, Lakis S, Tikas I, Giannoulatou E, Lazaridis G, Papadopoulou K, Manoussou K, Efstratiou I, Papanikolaou A, Fostira F, Vlachos I, Tarlatzis B, Fountzilas G. Pathogenic BRCA1 mutations may be necessary but not sufficient for tissue genomic heterogeneity: Deep sequencing data from ovarian cancer patients. Gynecol Oncol. 2019 02; 152(2):375-386. PMID: 30446274.
    Citations: 6     Fields:    Translation:Humans
  28. Paraskevopoulou MD, Karagkouni D, Vlachos IS, Tastsoglou S, Hatzigeorgiou AG. microCLIP super learning framework uncovers functional transcriptome-wide miRNA interactions. Nat Commun. 2018 09 06; 9(1):3601. PMID: 30190538.
    Citations: 11     Fields:    Translation:HumansCells
  29. Moris D, Theocharis S, Davakis S, Patelis N, Agrogiannis G, Vlachos IS, Spartalis E, Athanasiou A, Bakoyiannis C, Perrea DN, Georgopoulos S. Serum Calprotectin as a Novel Biomarker in Abdominal Aortic Aneurysm Pathogenesis and Progression: Preliminary Data from Experimental Model in Rats. Curr Vasc Pharmacol. 2018 01 26; 16(2):168-178. PMID: 28155626.
    Citations: 2     Fields:    Translation:HumansAnimals
  30. Karagkouni D, Paraskevopoulou MD, Chatzopoulos S, Vlachos IS, Tastsoglou S, Kanellos I, Papadimitriou D, Kavakiotis I, Maniou S, Skoufos G, Vergoulis T, Dalamagas T, Hatzigeorgiou AG. DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA-gene interactions. Nucleic Acids Res. 2018 01 04; 46(D1):D239-D245. PMID: 29156006; PMCID: PMC5753203.
    Citations: 341     Fields:    Translation:HumansAnimals
  31. Zagganas K, Vergoulis T, Paraskevopoulou MD, Vlachos IS, Skiadopoulos S, Dalamagas T. BUFET: boosting the unbiased miRNA functional enrichment analysis using bitsets. BMC Bioinformatics. 2017 Sep 06; 18(1):399. PMID: 28874117.
    Citations: 1     Fields:    
  32. Mishra V, Karumuri BK, Gautier NM, Liu R, Hutson TN, Vanhoof-Villalba SL, Vlachos I, Iasemidis L, Glasscock E. Scn2a deletion improves survival and brain-heart dynamics in the Kcna1-null mouse model of sudden unexpected death in epilepsy (SUDEP). Hum Mol Genet. 2017 06 01; 26(11):2091-2103. PMID: 28334922; PMCID: PMC6075631.
    Citations: 20     Fields:    Translation:Animals
  33. Kouroupi G, Taoufik E, Vlachos IS, Tsioras K, Antoniou N, Papastefanaki F, Chroni-Tzartou D, Wrasidlo W, Bohl D, Stellas D, Politis PK, Vekrellis K, Papadimitriou D, Stefanis L, Bregestovski P, Hatzigeorgiou AG, Masliah E, Matsas R. Defective synaptic connectivity and axonal neuropathology in a human iPSC-based model of familial Parkinson's disease. Proc Natl Acad Sci U S A. 2017 05 02; 114(18):E3679-E3688. PMID: 28416701; PMCID: PMC5422768.
    Citations: 59     Fields:    Translation:HumansCells
  34. Konstantopoulos P, Doulamis IP, Tzani A, Korou ML, Agapitos E, Vlachos IS, Pergialiotis V, Verikokos C, Mastorakos G, Katsilambros NL, Perrea DN. Metabolic effects of Crocus sativus and protective action against non-alcoholic fatty liver disease in diabetic rats. Biomed Rep. 2017 May; 6(5):513-518. PMID: 28529733; PMCID: PMC5431529.
    Citations: 4     
  35. Fragkouli A, Koukouraki P, Vlachos IS, Paraskevopoulou MD, Hatzigeorgiou AG, Doxakis E. Neuronal ELAVL proteins utilize AUF-1 as a co-partner to induce neuron-specific alternative splicing of APP. Sci Rep. 2017 03 14; 7:44507. PMID: 28291226.
    Citations: 11     Fields:    Translation:HumansCells
  36. Vlachos IS, Hatzigeorgiou AG. Functional Analysis of miRNAs Using the DIANA Tools Online Suite. Methods Mol Biol. 2017; 1517:25-50. PMID: 27924472.
    Citations: 23     Fields:    Translation:HumansCells
  37. Kotoula V, Fostira F, Papadopoulou K, Apostolou P, Tsolaki E, Lazaridis G, Manoussou K, Zagouri F, Pectasides D, Vlachos I, Tikas I, Lakis S, Konstantopoulou I, Pentheroudakis G, Gogas H, Papakostas P, Christodoulou C, Bafaloukos D, Razis E, Karavasilis V, Bamias C, Yannoukakos D, Fountzilas G. The fate of BRCA1-related germline mutations in triple-negative breast tumors. Am J Cancer Res. 2017; 7(1):98-114. PMID: 28123851; PMCID: PMC5250684.
    Citations: 4     
  38. Petrov AI, Kay SJE, Kalvari I, Howe KL, Gray KA, Bruford EA, Kersey PJ, Cochrane G, Finn RD, Bateman A, Kozomara A, Griffiths-Jones S, Frankish A, Zwieb CW, Lau BY, Williams KP, Chan PP, Lowe TM, Cannone JJ, Gutell R, Machnicka MA, Bujnicki JM, Yoshihama M, Kenmochi N, Chai B, Cole JR, Szymanski M, Karlowski WM, Wood V, Huala E, Berardini TZ, Zhao Y, Chen R, Zhu W, Paraskevopoulou MD, Vlachos IS, Hatzigeorgiou AG, Ma L, Zhang Z, Puetz J, Stadler PF, McDonald D, Basu S, Fey P, Engel SR, Cherry JM, Volders PJ, Mestdagh P, Wower J, Clark MB, Quek XC, Dinger ME. RNAcentral: a comprehensive database of non-coding RNA sequences. Nucleic Acids Res. 2017 01 04; 45(D1):D128-D134. PMID: 27794554; PMCID: PMC5210518.
    Citations: 91     Fields:    Translation:HumansAnimals
  39. Kotoula V, Lakis S, Vlachos IS, Giannoulatou E, Zagouri F, Alexopoulou Z, Gogas H, Pectasides D, Aravantinos G, Efstratiou I, Pentheroudakis G, Papadopoulou K, Chatzopoulos K, Papakostas P, Sotiropoulou M, Nicolaou I, Razis E, Psyrri A, Kosmidis P, Papadimitriou C, Fountzilas G. Tumor Infiltrating Lymphocytes Affect the Outcome of Patients with Operable Triple-Negative Breast Cancer in Combination with Mutated Amino Acid Classes. PLoS One. 2016; 11(9):e0163138. PMID: 27685159; PMCID: PMC5042538.
    Citations: 5     Fields:    
  40. Papanicolaou A, Schetelig MF, Arensburger P, Atkinson PW, Benoit JB, Bourtzis K, Castañera P, Cavanaugh JP, Chao H, Childers C, Curril I, Dinh H, Doddapaneni H, Dolan A, Dugan S, Friedrich M, Gasperi G, Geib S, Georgakilas G, Gibbs RA, Giers SD, Gomulski LM, González-Guzmán M, Guillem-Amat A, Han Y, Hatzigeorgiou AG, Hernández-Crespo P, Hughes DS, Jones JW, Karagkouni D, Koskinioti P, Lee SL, Malacrida AR, Manni M, Mathiopoulos K, Meccariello A, Murali SC, Murphy TD, Muzny DM, Oberhofer G, Ortego F, Paraskevopoulou MD, Poelchau M, Qu J, Reczko M, Robertson HM, Rosendale AJ, Rosselot AE, Saccone G, Salvemini M, Savini G, Schreiner P, Scolari F, Siciliano P, Sim SB, Tsiamis G, Ureña E, Vlachos IS, Werren JH, Wimmer EA, Worley KC, Zacharopoulou A, Richards S, Handler AM. The whole genome sequence of the Mediterranean fruit fly, Ceratitis capitata (Wiedemann), reveals insights into the biology and adaptive evolution of a highly invasive pest species. Genome Biol. 2016 09 22; 17(1):192. PMID: 27659211; PMCID: PMC5034548.
    Citations: 44     Fields:    Translation:HumansAnimalsPHPublic Health
  41. Paraskevopoulou MD, Vlachos IS, Hatzigeorgiou AG. DIANA-TarBase and DIANA Suite Tools: Studying Experimentally Supported microRNA Targets. Curr Protoc Bioinformatics. 2016 09 07; 55:12.14.1-12.14.18. PMID: 27603020.
    Citations: 20     Fields:    Translation:Animals
  42. Vlachos IS, Vergoulis T, Paraskevopoulou MD, Lykokanellos F, Georgakilas G, Georgiou P, Chatzopoulos S, Karagkouni D, Christodoulou F, Dalamagas T, Hatzigeorgiou AG. DIANA-mirExTra v2.0: Uncovering microRNAs and transcription factors with crucial roles in NGS expression data. Nucleic Acids Res. 2016 07 08; 44(W1):W128-34. PMID: 27207881; PMCID: PMC4987956.
    Citations: 20     Fields:    Translation:HumansAnimalsCells
  43. Paraskevopoulou MD, Vlachos IS, Karagkouni D, Georgakilas G, Kanellos I, Vergoulis T, Zagganas K, Tsanakas P, Floros E, Dalamagas T, Hatzigeorgiou AG. DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts. Nucleic Acids Res. 2016 Jan 04; 44(D1):D231-8. PMID: 26612864; PMCID: PMC4702897.
    Citations: 324     Fields:    Translation:HumansAnimalsCells
  44. Georgakilas G, Vlachos IS, Zagganas K, Vergoulis T, Paraskevopoulou MD, Kanellos I, Tsanakas P, Dellis D, Fevgas A, Dalamagas T, Hatzigeorgiou AG. DIANA-miRGen v3.0: accurate characterization of microRNA promoters and their regulators. Nucleic Acids Res. 2016 Jan 04; 44(D1):D190-5. PMID: 26586797; PMCID: PMC4702888.
    Citations: 25     Fields:    Translation:HumansAnimalsCells
  45. Triantafyllidou O, Vlachos IS, Apostolou P, Konstantopoulou I, Grivas A, Panopoulos C, Dimitrakakis C, Kassanos D, Loghis C, Bramis I, Vlahos N, Yannoukakos D, Fostira F. Epidemiological and clinicopathological characteristics of BRCA-positive and BRCA-negative breast cancer patients in Greece. J BUON. 2015 Jul-Aug; 20(4):978-84. PMID: 26416046.
    Citations: 3     Fields:    Translation:Humans
  46. Vlachos IS, Zagganas K, Paraskevopoulou MD, Georgakilas G, Karagkouni D, Vergoulis T, Dalamagas T, Hatzigeorgiou AG. DIANA-miRPath v3.0: deciphering microRNA function with experimental support. Nucleic Acids Res. 2015 Jul 01; 43(W1):W460-6. PMID: 25977294; PMCID: PMC4489228.
    Citations: 732     Fields:    Translation:HumansAnimals
  47. Georgakilas G, Vlachos IS, Paraskevopoulou MD, Yang P, Zhang Y, Economides AN, Hatzigeorgiou AG. microTSS: accurate microRNA transcription start site identification reveals a significant number of divergent pri-miRNAs. Nat Commun. 2014 Dec 10; 5:5700. PMID: 25492647.
    Citations: 27     Fields:    Translation:HumansAnimalsCells
  48. Kandilis AN, Koskinas J, Vlachos I, Skaltsas S, Karandrea D, Karakitsos P, Pantopoulou A, Palaiologou M, Nikiteas N, Tiniakos DG, Perrea DN. Liver regeneration: immunohistochemical study of intrinsic hepatic innervation after partial hepatectomy in rats. BMC Gastroenterol. 2014 Nov 25; 14:202. PMID: 25421900.
    Citations: 5     Fields:    Translation:AnimalsCells
  49. Vlachos IS, Paraskevopoulou MD, Karagkouni D, Georgakilas G, Vergoulis T, Kanellos I, Anastasopoulos IL, Maniou S, Karathanou K, Kalfakakou D, Fevgas A, Dalamagas T, Hatzigeorgiou AG. DIANA-TarBase v7.0: indexing more than half a million experimentally supported miRNA:mRNA interactions. Nucleic Acids Res. 2015 Jan; 43(Database issue):D153-9. PMID: 25416803; PMCID: PMC4383989.
    Citations: 341     Fields:    Translation:Cells
  50. Korou LM, Agrogiannis G, Koros C, Kitraki E, Vlachos IS, Tzanetakou I, Karatzas T, Pergialiotis V, Dimitroulis D, Perrea DN. Impact of N-acetylcysteine and sesame oil on lipid metabolism and hypothalamic-pituitary-adrenal axis homeostasis in middle-aged hypercholesterolemic mice. Sci Rep. 2014 Oct 28; 4:6806. PMID: 25348324.
    Citations: 7     Fields:    Translation:Animals
  51. Pantazopoulos I, Xanthos T, Vlachos I, Kakoulas Z, Stroumpoulis K, Chalkias A, Tsoukalas G, Koutsoukou A. Pleural fluid glucose: A predictor of unsuccessful pleurodesis in a preselected cohort of patients with malignant pleural effusion. J BUON. 2014 Oct-Dec; 19(4):1018-23. PMID: 25536610.
    Citations: 3     Fields:    Translation:Humans
  52. Moschonas DP, Piperi C, Korkolopoulou P, Levidou G, Kavantzas N, Trigka EA, Vlachos I, Arapostathi C, Perrea D, Mitropoulos D, Diamanti-Kandarakis E, Papavassiliou AG. Impact of diet-induced obesity in male mouse reproductive system: The role of advanced glycation end product-receptor for advanced glycation end product axis. Exp Biol Med (Maywood). 2014 08; 239(8):937-947. PMID: 24872429.
    Citations: 3     Fields:    
  53. Stathaki M, Armakolas A, Dimakakos A, Kaklamanis L, Vlachos I, Konstantoulakis MM, Zografos G, Koutsilieris M. Kisspeptin effect on endothelial monocyte activating polypeptide II (EMAP-II)-associated lymphocyte cell death and metastases in colorectal cancer patients. Mol Med. 2014 Mar 18; 20:80-92. PMID: 24395571.
    Citations: 4     Fields:    Translation:HumansCells
  54. Georgiadis I, Karatzas T, Korou LM, Agrogiannis G, Vlachos IS, Pantopoulou A, Tzanetakou IP, Katsilambros N, Perrea DN. Evaluation of Chios mastic gum on lipid and glucose metabolism in diabetic mice. J Med Food. 2014 Mar; 17(3):393-9. PMID: 24404977.
    Citations: 3     Fields:    Translation:HumansAnimals
  55. Tsitsilonis S, Chatzistergos PE, Panayiotis CE, Mitousoudis AS, Athanasios MS, Kourkoulis SK, Stavros KK, Vlachos IS, Ioannis VS, Agrogiannis G, George A, Fasseas K, Konstantinos F, Perrea DN, Despina PN, Zoubos AB, Aristides ZB. Anabolic androgenic steroids reverse the beneficial effect of exercise on tendon biomechanics: an experimental study. Foot Ankle Surg. 2014 Jun; 20(2):94-9. PMID: 24796826.
    Citations: 6     Fields:    Translation:Animals
  56. Protogerou E, Arvaniti I, Vlachos I, Khabbaz MG. Effectiveness of a canal brush on removing smear layer: a scanning electron microscopic study. Braz Dent J. 2013 Nov-Dec; 24(6):580-4. PMID: 24474353.
    Citations: 1     Fields:    Translation:Humans
  57. Perrea A, Vlachos IS, Korou LM, Doulamis IP, Exarhopoulou K, Kypraios G, Kalofoutis A, Perrea DN. Comparison of the short-term oxidative stress response in National League basketball and soccer adolescent athletes. Angiology. 2014 Aug; 65(7):624-9. PMID: 23921505.
    Citations: 5     Fields:    Translation:HumansCells
  58. Paraskevopoulou MD, Vlachos IS, Athanasiadis E, Spyrou G. BiDaS: a web-based Monte Carlo BioData Simulator based on sequence/feature characteristics. Nucleic Acids Res. 2013 Jul; 41(Web Server issue):W582-6. PMID: 23716644.
    Citations:    Fields:    Translation:Cells
  59. Paraskevopoulou MD, Georgakilas G, Kostoulas N, Vlachos IS, Vergoulis T, Reczko M, Filippidis C, Dalamagas T, Hatzigeorgiou AG. DIANA-microT web server v5.0: service integration into miRNA functional analysis workflows. Nucleic Acids Res. 2013 Jul; 41(Web Server issue):W169-73. PMID: 23680784; PMCID: PMC3692048.
    Citations: 492     Fields:    Translation:HumansAnimals
  60. Vlachos IS, Hatzigeorgiou AG. Online resources for miRNA analysis. Clin Biochem. 2013 Jul; 46(10-11):879-900. PMID: 23518312.
    Citations: 33     Fields:    Translation:HumansAnimals
  61. Paschou M, Paraskevopoulou MD, Vlachos IS, Koukouraki P, Hatzigeorgiou AG, Doxakis E. miRNA regulons associated with synaptic function. PLoS One. 2012; 7(10):e46189. PMID: 23071543.
    Citations: 23     Fields:    Translation:HumansCells
  62. Perelas A, Safarika V, Vlachos IS, Tzanetakou I, Korou LM, Konstantopoulos P, Doulamis I, Ioannidis I, Kornezos I, Gargas D, Klonaris C, Perrea DN, Chatziioannou A. Correlation between mesenteric fat thickness and serum apolipoproteins in patients with peripheral arterial occlusive disease. Lipids Health Dis. 2012 Oct 01; 11:125. PMID: 23025515.
    Citations: 4     Fields:    Translation:Humans
  63. Kostakis ID, Cholidou KG, Vaiopoulos AG, Vlachos IS, Perrea D, Vaos G. Fecal calprotectin in pediatric inflammatory bowel disease: a systematic review. Dig Dis Sci. 2013 Feb; 58(2):309-19. PMID: 22899243.
    Citations: 16     Fields:    Translation:Humans
  64. Tzanetakou IP, Doulamis IP, Korou LM, Agrogiannis G, Vlachos IS, Pantopoulou A, Mikhailidis DP, Patsouris E, Vlachos I, Perrea DN. Water Soluble Vitamin E Administration in Wistar Rats with Non-alcoholic Fatty Liver Disease. Open Cardiovasc Med J. 2012; 6:88-97. PMID: 22930662.
    Citations: 3     
  65. Vlachos IS, Kostoulas N, Vergoulis T, Georgakilas G, Reczko M, Maragkakis M, Paraskevopoulou MD, Prionidis K, Dalamagas T, Hatzigeorgiou AG. DIANA miRPath v.2.0: investigating the combinatorial effect of microRNAs in pathways. Nucleic Acids Res. 2012 Jul; 40(Web Server issue):W498-504. PMID: 22649059.
    Citations: 287     Fields:    Translation:Humans
  66. Pantazopoulos IN, Xanthos TT, Vlachos I, Troupis G, Kotsiomitis E, Johnson E, Papalois A, Skandalakis P. Use of the impedance threshold device improves survival rate and neurological outcome in a swine model of asphyxial cardiac arrest*. Crit Care Med. 2012 Mar; 40(3):861-8. PMID: 21983368.
    Citations: 15     Fields:    Translation:Animals
  67. Fotis L, Agrogiannis G, Vlachos IS, Pantopoulou A, Margoni A, Kostaki M, Verikokos C, Tzivras D, Mikhailidis DP, Perrea D. Intercellular adhesion molecule (ICAM)-1 and vascular cell adhesion molecule (VCAM)-1 at the early stages of atherosclerosis in a rat model. In Vivo. 2012 Mar-Apr; 26(2):243-50. PMID: 22351665.
    Citations: 44     Fields:    Translation:AnimalsCells
  68. Xanthos T, Karatzas T, Stroumpoulis K, Lelovas P, Simitsis P, Vlachos I, Kouraklis G, Kouskouni E, Dontas I. Continuous chest compressions improve survival and neurologic outcome in a swine model of prolonged ventricular fibrillation. Am J Emerg Med. 2012 Oct; 30(8):1389-94. PMID: 22205006.
    Citations: 10     Fields:    Translation:Animals
  69. Vergoulis T, Vlachos IS, Alexiou P, Georgakilas G, Maragkakis M, Reczko M, Gerangelos S, Koziris N, Dalamagas T, Hatzigeorgiou AG. TarBase 6.0: capturing the exponential growth of miRNA targets with experimental support. Nucleic Acids Res. 2012 Jan; 40(Database issue):D222-9. PMID: 22135297.
    Citations: 298     Fields:    Translation:Humans
  70. Xanthos T, Bassiakou E, Koudouna E, Stroumpoulis K, Vlachos I, Johnson EO, Vasileiou P, Papalois A, Iacovidou N. Inexperienced nurses and doctors are equally efficient in managing the airway in a manikin model. Heart Lung. 2012 Mar-Apr; 41(2):161-6. PMID: 21893345.
    Citations: 1     Fields:    Translation:Humans
  71. Bellos JK, Perrea DN, Theodotopoulou E, Vlachos I, Kostakis AI. Nitric oxide production as an indicator of recurrence of focal and segmental glomerulosclerosis following kidney transplantation. Saudi J Kidney Dis Transpl. 2011 Sep; 22(5):1030-2. PMID: 21912042.
    Citations: 1     Fields:    Translation:Humans
  72. Margaritis EV, Yanni AE, Agrogiannis G, Liarakos N, Pantopoulou A, Vlachos I, Papachristodoulou A, Korkolopoulou P, Patsouris E, Kostakis M, Perrea DN, Kostakis A. Effects of oral administration of (L)-arginine, (L)-NAME and allopurinol on intestinal ischemia/reperfusion injury in rats. Life Sci. 2011 Jun 06; 88(23-24):1070-6. PMID: 21565201.
    Citations: 5     Fields:    Translation:Animals
  73. Arapostathi C, Tzanetakou IP, Kokkinos AD, Tentolouris NK, Vlachos IS, Donta IA, Perrea KN, Perrea DN, Katsilambros NL. A diet rich in monounsaturated fatty acids improves the lipid profile of mice previously on a diet rich in saturated fatty acids. Angiology. 2011 Nov; 62(8):636-40. PMID: 21511678.
    Citations: 2     Fields:    Translation:Animals
  74. Paraskevas KI, Pantopoulou A, Vlachos IS, Agrogiannis G, Iliopoulos DG, Karatzas G, Tzivras D, Mikhailidis DP, Perrea DN. Comparison of fibrate, ezetimibe, low- and high-dose statin therapy for the dyslipidemia of the metabolic syndrome in a mouse model. Angiology. 2011 Feb; 62(2):144-54. PMID: 21220373.
    Citations: 5     Fields:    Translation:Animals
  75. Ciocchi S, Herry C, Grenier F, Wolff SB, Letzkus JJ, Vlachos I, Ehrlich I, Sprengel R, Deisseroth K, Stadler MB, Müller C, Lüthi A. Encoding of conditioned fear in central amygdala inhibitory circuits. Nature. 2010 Nov 11; 468(7321):277-82. PMID: 21068837.
    Citations: 422     Fields:    Translation:AnimalsCells
  76. Tsirlis TD, Kostakis A, Papastratis G, Masselou K, Vlachos I, Papachristodoulou A, Nikiteas NI. Predictive significance of preoperative serum VEGF-C and VEGF-D, independently and combined with Ca19-9, for the presence of malignancy and lymph node metastasis in patients with gastric cancer. J Surg Oncol. 2010 Nov 01; 102(6):699-703. PMID: 20672317.
    Citations: 9     Fields:    Translation:Humans
  77. Bellos JK, Perrea DN, Theodoropoulou E, Vlachos I, Papachristodoulou A, Kostakis AI. Clinical correlation of nitric oxide levels with acute rejection in renal transplantation. Int Urol Nephrol. 2011 Sep; 43(3):883-90. PMID: 20957433.
    Citations: 1     Fields:    Translation:Humans
  78. Margoni A, Perrea DN, Vlachos I, Prokopaki G, Pantopoulou A, Fotis L, Kostaki M, Papavassiliou AG. Serum leptin, adiponectin and tumor necrosis factor-a in hyperlipidemic rats with/without concomitant diabetes mellitus. Mol Med. 2011 Jan-Feb; 17(1-2):36-40. PMID: 20838752.
    Citations: 15     Fields:    Translation:Animals
  79. Vlachos I, Kugiumtzis D. Nonuniform state-space reconstruction and coupling detection. Phys Rev E Stat Nonlin Soft Matter Phys. 2010 Jul; 82(1 Pt 2):016207. PMID: 20866707.
    Citations: 25     Fields:    
  80. Tyrovola JB, Perrea D, Halazonetis DJ, Dontas I, Vlachos IS, Makou M. Relation of soluble RANKL and osteoprotegerin levels in blood and gingival crevicular fluid to the degree of root resorption after orthodontic tooth movement. J Oral Sci. 2010 Jun; 52(2):299-311. PMID: 20587957.
    Citations: 6     Fields:    Translation:Animals
  81. Xanthos T, Pantazopoulos I, Vlachos I, Stroumpoulis K, Barouxis D, Kitsou V, Marathias K, Karabinis A, Papadimitriou L. Factors influencing arrival of patients with acute myocardial infarction at emergency departments: implications for community nursing interventions. J Adv Nurs. 2010 Jul; 66(7):1469-77. PMID: 20492020.
    Citations:    Fields:    Translation:Humans
  82. Korou LM, Agrogiannis G, Pantopoulou A, Vlachos IS, Iliopoulos D, Karatzas T, Perrea DN. Comparative antilipidemic effect of N-acetylcysteine and sesame oil administration in diet-induced hypercholesterolemic mice. Lipids Health Dis. 2010 Mar 06; 9:23. PMID: 20205925.
    Citations: 11     Fields:    Translation:AnimalsCells
  83. Xanthos T, Iacovidou N, Pantazopoulos I, Vlachos I, Bassiakou E, Stroumpoulis K, Kouskouni E, Karabinis A, Papadimitriou L. Ischaemia-modified albumin predicts the outcome of cardiopulmonary resuscitation: An experimental study. Resuscitation. 2010 May; 81(5):591-5. PMID: 20189703.
    Citations: 2     Fields:    Translation:Animals
  84. Tsitsilonis S, Vlachos IS, Bampali A, Revenas K, Votteas V, Perrea DN. Sonographic measurements of subcutaneous fat in obese individuals may correlate better with peripheral artery disease indices. J Clin Ultrasound. 2009 Jun; 37(5):263-9. PMID: 19353552.
    Citations: 1     Fields:    Translation:Humans
  85. Doumouchtsis K, Perrea D, Doumouchtsis S, Tziamalis M, Poulakou M, Vlachos I, Kostakis A. Regulatory effect of parathyroid hormone on sRANKL-osteoprotegerin in hemodialysis patients with renal bone disease. Ther Apher Dial. 2009 Feb; 13(1):49-55. PMID: 19379170.
    Citations: 5     Fields:    Translation:Humans
  86. Jeffery ST, Doumouchtsis SK, Vlachos IS, Fynes MM. Are voiding symptoms really associated with abnormal urodynamic voiding parameters in women? Int J Urol. 2008 Dec; 15(12):1044-8. PMID: 19054175.
    Citations: 7     Fields:    Translation:Humans
  87. Perrea DN, Ekmektzoglou KA, Vlachos IS, Tsitsilonis S, Koudouna E, Stroumpoulis K, Xanthos T. A formula for the stratified selection of patients with paroxysmal atrial fibrillation in the emergency setting: a retrospective pilot study. J Emerg Med. 2011 Apr; 40(4):374-9. PMID: 18829204.
    Citations: 4     Fields:    Translation:Humans
  88. Moulakakis KG, Poulakou MV, Dosios T, Dontas I, Sokolis DP, Vlachos IS, Safioleas MC, Papachristodoulou A, Karayannacos PE, Perrea DN. Hypothyroidism and the aorta. evidence of increased oxidative DNA damage to the aorta of hypothyroid rats. In Vivo. 2008 Sep-Oct; 22(5):603-8. PMID: 18853754.
    Citations: 3     Fields:    Translation:AnimalsCells
  89. Tsigris C, Tsechpenakis A, Nikiteas N, Tzogios I, Vlachos IS, Diamantis T, Perrea DN. Laparoscopic bowel injury: role of the site and the instrument type: study with an animal model. Surg Endosc. 2008 Oct; 22(10):2164-7. PMID: 18648876.
    Citations:    Fields:    Translation:Animals
  90. Poulakou MV, Paraskevas KI, Vlachos IS, Karabina SA, Wilson MR, Iliopoulos DC, Tsitsilonis SI, Mikhailidis DP, Perrea DN. Effect of statins on serum apolipoprotein j and paraoxonase-1 levels in patients with ischemic heart disease undergoing coronary angiography. Angiology. 2008 Apr-May; 59(2):137-44. PMID: 18403458.
    Citations: 1     Fields:    Translation:Humans
  91. Kantsos H, Papadopoulos S, Perrea D, Xanthos T, Vlachos I, Pantopoulou A, Agrogiannis G, Condilis N, Lazaris A, Patsouris E, Bramis J. Effects of nimodipine administration on small bowel mucosa under conditions of laparotomy and consequent 48-hour starvation in a rat model. Ann Ital Chir. 2008 Mar-Apr; 79(2):143-9. PMID: 18727279.
    Citations:    Fields:    Translation:AnimalsCells
  92. Xanthos T, Ekmektzoglou KA, Vlachos IS, Dimitroulis D, Tsitsilonis S, Karatzas T, Perrea DN. A prognostic index for the successful use of adenosine in patients with paroxysmal supraventricular tachycardia in emergency settings: a retrospective study. Am J Emerg Med. 2008 Mar; 26(3):304-9. PMID: 18358941.
    Citations: 1     Fields:    Translation:Humans
  93. Doumouchtsis KK, Kostakis AI, Doumouchtsis SK, Grapsa EI, Passalidou IA, Tziamalis MP, Poulakou MV, Vlachos IS, Perrea DN. The effect of sexual hormone abnormalities on proximal femur bone mineral density in hemodialysis patients and the possible role of RANKL. Hemodial Int. 2008 Jan; 12(1):100-7. PMID: 18271850.
    Citations: 8     Fields:    Translation:Humans
  94. Perrea DN, Moulakakis KG, Poulakou MV, Vlachos IS, Nikiteas N, Kostakis A. Correlation between lipid abnormalities and immunosuppressive therapy in renal transplant recipients with stable renal function. Int Urol Nephrol. 2008; 40(2):521-7. PMID: 17978855.
    Citations: 4     Fields:    Translation:Humans
  95. Vlachos IS, Hatziioannou A, Perelas A, Perrea DN. Sonographic assessment of regional adiposity. AJR Am J Roentgenol. 2007 Dec; 189(6):1545-53. PMID: 18029899.
    Citations: 21     Fields:    Translation:Humans
  96. Moulakakis KG, Poulakou MV, Paraskevas KI, Dontas I, Vlachos IS, Sokolis DP, Dosios T, Karayannacos PE, Perrea D. Hyperthyroidism is associated with increased aortic oxidative DNA damage in a rat model. In Vivo. 2007 Nov-Dec; 21(6):1021-6. PMID: 18210749.
    Citations: 3     Fields:    Translation:AnimalsCells
  97. Xanthos T, Lelovas P, Vlachos I, Tsirikos-Karapanos N, Kouskouni E, Perrea D, Dontas I. Cardiopulmonary arrest and resuscitation in Landrace/Large White swine: a research model. Lab Anim. 2007 Jul; 41(3):353-62. PMID: 17640463.
    Citations: 20     Fields:    Translation:Animals
  98. Xanthos T, Bassiakou E, Vlachos IS, Bassiakos S, Michalakis K, Moutzouris DA, Papadimitriou L. Intravenous and oral administration of amiodarone for the treatment of recent onset atrial fibrillation after digoxin administration. Int J Cardiol. 2007 Oct 18; 121(3):291-5. PMID: 17434635.
    Citations: 2     Fields:    Translation:Humans
  99. Xanthos T, Tsirikos-Karapanos N, Papadimitriou D, Vlachos IS, Tsiftsi K, Ekmektzoglou KA, Papadimitriou L. Resuscitation outcomes comparing year 2000 with year 2005 ALS guidelines in a pig model of cardiac arrest. Resuscitation. 2007 Jun; 73(3):459-66. PMID: 17291669.
    Citations:    Fields:    Translation:Animals
  100. Perrea DN, Moulakakis KG, Poulakou MV, Vlachos IS, Papachristodoulou A, Kostakis AI. Correlation between oxidative stress and immunosuppressive therapy in renal transplant recipients with an uneventful postoperative course and stable renal function. Int Urol Nephrol. 2006; 38(2):343-8. PMID: 16868708.
    Citations: 14     Fields:    Translation:Humans
  101. Vlachos I, Kalivas D, Panou-Diamandi O. An electronic post market surveillance system for medical devices. Comput Methods Programs Biomed. 2003 Jun; 71(2):129-40. PMID: 12758134.
    Citations:    Fields:    
  102. Marinos G, Palamas S, Vlachos I, Panou-Diamandi O, Kalivas D, Koutsouris D. Education and training in the MEDICOM system. Stud Health Technol Inform. 2000; 72:119-24. PMID: 11010323.
    Citations:    Fields:    Translation:Humans
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Funded by the NIH National Center for Advancing Translational Sciences through its Clinical and Translational Science Awards Program, grant number UL1TR002541.