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Scott W Olesen, Ph.D.

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Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
  1. Tsou AM, Olesen SW, Alm EJ, Snapper SB. 16S rRNA sequencing analysis: the devil is in the details. Gut Microbes. 2020 Sep 02; 11(5):1139-1142. PMID: 32329652.
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  2. Olesen SW, Grad YH. Deciphering the Impact of Bystander Selection for Antibiotic Resistance in Neisseria gonorrhoeae. J Infect Dis. 2020 Mar 16; 221(7):1033-1035. PMID: 30957162.
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  3. Olesen SW, Panchal P, Chen J, Budree S, Osman M. Global disparities in faecal microbiota transplantation research. Lancet Gastroenterol Hepatol. 2020 Mar; 5(3):241. PMID: 32061326.
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  4. Ryu S, Cowling BJ, Wu P, Olesen S, Fraser C, Sun DS, Lipsitch M, Grad YH. Case-based surveillance of antimicrobial resistance with full susceptibility profiles. JAC Antimicrob Resist. 2019 Dec; 1(3):dlz070. PMID: 32280945.
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  5. Goldstein E, Olesen SW, Karaca Z, Steiner CA, Viboud C, Lipsitch M. Levels of outpatient prescribing for four major antibiotic classes and rates of septicemia hospitalization in adults in different US states - a statistical analysis. BMC Public Health. 2019 Aug 19; 19(1):1138. PMID: 31426780.
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  6. Olesen SW, MacFadden D, Grad YH. Cumulative Probability of Receiving an Antibiotic Prescription over Time. N Engl J Med. 2019 05 09; 380(19):1872-1873. PMID: 31067381.
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  7. Miller JI, Techtmann S, Fortney J, Mahmoudi N, Joyner D, Liu J, Olesen S, Alm E, Fernandez A, Gardinali P, GaraJayeva N, Askerov FS, Hazen TC. Oil Hydrocarbon Degradation by Caspian Sea Microbial Communities. Front Microbiol. 2019; 10:995. PMID: 31143165.
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  8. Olesen SW, Lipsitch M, Grad YH. Response to comment on 'The distribution of antibiotic use and its association with antibiotic resistance'. Elife. 2019 05 03; 8. PMID: 31050649.
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  9. Klevens RM, Caten E, Olesen SW, DeMaria A, Troppy S, Grad YH. Outpatient Antibiotic Prescribing in Massachusetts, 2011-2015. Open Forum Infect Dis. 2019 May; 6(5):ofz169. PMID: 31065563.
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  10. Olesen SW, Torrone EA, Papp JR, Kirkcaldy RD, Lipsitch M, Grad YH. Azithromycin Susceptibility Among Neisseria gonorrhoeae Isolates and Seasonal Macrolide Use. J Infect Dis. 2019 01 29; 219(4):619-623. PMID: 30239814.
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  11. Tedijanto C, Olesen SW, Grad YH, Lipsitch M. Estimating the proportion of bystander selection for antibiotic resistance among potentially pathogenic bacterial flora. Proc Natl Acad Sci U S A. 2018 12 18; 115(51):E11988-E11995. PMID: 30559213.
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  12. Olesen SW, Barnett ML, MacFadden DR, Brownstein JS, Hernández-Díaz S, Lipsitch M, Grad YH. The distribution of antibiotic use and its association with antibiotic resistance. Elife. 2018 12 18; 7. PMID: 30560781.
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  13. Olesen SW, Grad YH. Racial/Ethnic Disparities in Antimicrobial Drug Use, United States, 2014-2015. Emerg Infect Dis. 2018 11; 24(11):2126-2128. PMID: 30334733.
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  14. Arora-Williams K, Olesen SW, Scandella BP, Delwiche K, Spencer SJ, Myers EM, Abraham S, Sooklal A, Preheim SP. Dynamics of microbial populations mediating biogeochemical cycling in a freshwater lake. Microbiome. 2018 09 18; 6(1):165. PMID: 30227897.
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  15. Olesen SW, Barnett ML, MacFadden DR, Lipsitch M, Grad YH. Trends in outpatient antibiotic use and prescribing practice among US older adults, 2011-15: observational study. BMJ. 2018 07 27; 362:k3155. PMID: 30054353.
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  16. Olesen SW, Leier MM, Alm EJ, Kahn SA. Searching for superstool: maximizing the therapeutic potential of FMT. Nat Rev Gastroenterol Hepatol. 2018 07; 15(7):387-388. PMID: 29703976.
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  17. MacFadden DR, Lipsitch M, Olesen SW, Grad Y. Multidrug-resistant Neisseria gonorrhoeae: implications for future treatment strategies. Lancet Infect Dis. 2018 06; 18(6):599. PMID: 29856349.
    Citations: 1     Fields:    
  18. Wilck N, Matus MG, Kearney SM, Olesen SW, Forslund K, Bartolomaeus H, Haase S, Mähler A, Balogh A, Markó L, Vvedenskaya O, Kleiner FH, Tsvetkov D, Klug L, Costea PI, Sunagawa S, Maier L, Rakova N, Schatz V, Neubert P, Frätzer C, Krannich A, Gollasch M, Grohme DA, Côrte-Real BF, Gerlach RG, Basic M, Typas A, Wu C, Titze JM, Jantsch J, Boschmann M, Dechend R, Kleinewietfeld M, Kempa S, Bork P, Linker RA, Alm EJ, Müller DN. Salt-responsive gut commensal modulates TH17 axis and disease. Nature. 2017 11 30; 551(7682):585-589. PMID: 29143823.
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  19. Olesen SW, Duvallet C, Alm EJ. dbOTU3: A new implementation of distribution-based OTU calling. PLoS One. 2017; 12(5):e0176335. PMID: 28472072.
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  20. Olesen SW, Gurry T, Alm EJ. Designing fecal microbiota transplant trials that account for differences in donor stool efficacy. Stat Methods Med Res. 2018 10; 27(10):2906-2917. PMID: 28178876.
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  21. Olesen SW, Alm EJ. Dysbiosis is not an answer. Nat Microbiol. 2016 11 25; 1:16228. PMID: 27886190.
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  22. Preheim SP, Olesen SW, Spencer SJ, Materna A, Varadharajan C, Blackburn M, Friedman J, Rodríguez J, Hemond H, Alm EJ. Surveys, simulation and single-cell assays relate function and phylogeny in a lake ecosystem. Nat Microbiol. 2016 Aug 15; 1(9):16130. PMID: 27562262.
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  23. Olesen SW, Vora S, Techtmann SM, Fortney JL, Bastidas-Oyanedel JR, Rodríguez J, Hazen TC, Alm EJ. A Novel Analysis Method for Paired-Sample Microbial Ecology Experiments. PLoS One. 2016; 11(5):e0154804. PMID: 27152415.
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  24. Smith MB, Rocha AM, Smillie CS, Olesen SW, Paradis C, Wu L, Campbell JH, Fortney JL, Mehlhorn TL, Lowe KA, Earles JE, Phillips J, Techtmann SM, Joyner DC, Elias DA, Bailey KL, Hurt RA, Preheim SP, Sanders MC, Yang J, Mueller MA, Brooks S, Watson DB, Zhang P, He Z, Dubinsky EA, Adams PD, Arkin AP, Fields MW, Zhou J, Alm EJ, Hazen TC. Natural bacterial communities serve as quantitative geochemical biosensors. mBio. 2015 May 12; 6(3):e00326-15. PMID: 25968645.
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  25. Bingemann D, Allen RM, Olesen SW. Single molecules reveal the dynamics of heterogeneities in a polymer at the glass transition. J Chem Phys. 2011 Jan 14; 134(2):024513. PMID: 21241126.
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Funded by the NIH National Center for Advancing Translational Sciences through its Clinical and Translational Science Awards Program, grant number UL1TR002541.