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Ruslan A Soldatov, Ph.D.

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Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
  1. Petukhov V, Xu RJ, Soldatov RA, Cadinu P, Khodosevich K, Moffitt JR, Kharchenko PV. Cell segmentation in imaging-based spatial transcriptomics. Nat Biotechnol. 2021 Oct 14. PMID: 34650268.
    Citations:    Fields:    
  2. Seplyarskiy VB, Soldatov RA, Koch E, McGinty RJ, Goldmann JM, Hernandez RD, Barnes K, Correa A, Burchard EG, Ellinor PT, McGarvey ST, Mitchell BD, Vasan RS, Redline S, Silverman E, Weiss ST, Arnett DK, Blangero J, Boerwinkle E, He J, Montgomery C, Rao DC, Rotter JI, Taylor KD, Brody JA, Chen YI, de Las Fuentes L, Hwu CM, Rich SS, Manichaikul AW, Mychaleckyj JC, Palmer ND, Smith JA, Kardia SLR, Peyser PA, Bielak LF, O'Connor TD, Emery LS, Gilissen C, Wong WSW, Kharchenko PV, Sunyaev S. Population sequencing data reveal a compendium of mutational processes in the human germ line. Science. 2021 08 27; 373(6558):1030-1035. PMID: 34385354.
    Citations:    Fields:    Translation:HumansCells
  3. Bergen V, Soldatov RA, Kharchenko PV, Theis FJ. RNA velocity-current challenges and future perspectives. Mol Syst Biol. 2021 08; 17(8):e10282. PMID: 34435732.
    Citations:    Fields:    
  4. Krivanek J, Soldatov RA, Kastriti ME, Chontorotzea T, Herdina AN, Petersen J, Szarowska B, Landova M, Matejova VK, Holla LI, Kuchler U, Zdrilic IV, Vijaykumar A, Balic A, Marangoni P, Klein OD, Neves VCM, Yianni V, Sharpe PT, Harkany T, Metscher BD, Bajénoff M, Mina M, Fried K, Kharchenko PV, Adameyko I. Dental cell type atlas reveals stem and differentiated cell types in mouse and human teeth. Nat Commun. 2020 09 23; 11(1):4816. PMID: 32968047.
    Citations: 12     Fields:    Translation:HumansAnimalsCells
  5. Soldatov R, Kaucka M, Kastriti ME, Petersen J, Chontorotzea T, Englmaier L, Akkuratova N, Yang Y, Häring M, Dyachuk V, Bock C, Farlik M, Piacentino ML, Boismoreau F, Hilscher MM, Yokota C, Qian X, Nilsson M, Bronner ME, Croci L, Hsiao WY, Guertin DA, Brunet JF, Consalez GG, Ernfors P, Fried K, Kharchenko PV, Adameyko I. Spatiotemporal structure of cell fate decisions in murine neural crest. Science. 2019 Jun 07; 364(6444). PMID: 31171666.
    Citations: 88     Fields:    Translation:AnimalsCells
  6. La Manno G, Soldatov R, Zeisel A, Braun E, Hochgerner H, Petukhov V, Lidschreiber K, Kastriti ME, Lönnerberg P, Furlan A, Fan J, Borm LE, Liu Z, van Bruggen D, Guo J, He X, Barker R, Sundström E, Castelo-Branco G, Cramer P, Adameyko I, Linnarsson S, Kharchenko PV. RNA velocity of single cells. Nature. 2018 08; 560(7719):494-498. PMID: 30089906.
    Citations: 439     Fields:    Translation:AnimalsCells
  7. Terekhanova NV, Seplyarskiy VB, Soldatov RA, Bazykin GA. Evolution of Local Mutation Rate and Its Determinants. Mol Biol Evol. 2017 05 01; 34(5):1100-1109. PMID: 28138076.
    Citations: 8     Fields:    Translation:HumansAnimalsCells
  8. Mesitov MV, Soldatov RA, Zaichenko DM, Malakho SG, Klementyeva TS, Sokolovskaya AA, Kubatiev AA, Mironov AA, Moskovtsev AA. Differential processing of small RNAs during endoplasmic reticulum stress. Sci Rep. 2017 04 13; 7:46080. PMID: 28452371.
    Citations: 10     Fields:    Translation:HumansCells
  9. Seplyarskiy VB, Soldatov RA, Popadin KY, Antonarakis SE, Bazykin GA, Nikolaev SI. APOBEC-induced mutations in human cancers are strongly enriched on the lagging DNA strand during replication. Genome Res. 2016 Feb; 26(2):174-82. PMID: 26755635.
    Citations: 68     Fields:    Translation:HumansCells
  10. Vinogradova SV, Sutormin RA, Mironov AA, Soldatov RA. Probing-directed identification of novel structured RNAs. RNA Biol. 2016; 13(2):232-42. PMID: 26732206.
    Citations: 1     Fields:    Translation:HumansCells
  11. Seplyarskiy VB, Bazykin GA, Soldatov RA. Polymerase ? Activity Is Linked to Replication Timing in Humans: Evidence from Mutational Signatures. Mol Biol Evol. 2015 Dec; 32(12):3158-72. PMID: 26376651.
    Citations: 5     Fields:    Translation:HumansAnimalsCells
  12. Soldatov RA, Vinogradova SV, Mironov AA. RNASurface: fast and accurate detection of locally optimal potentially structured RNA segments. Bioinformatics. 2014 Feb 15; 30(4):457-63. PMID: 24292360.
    Citations: 9     Fields:    Translation:Cells
  13. Vinogradova SV, Soldatov RA, Mironov AA. [Genome-wide identification of functional noncoding RNAs,]. Mol Biol (Mosk). 2013 Jul-Aug; 47(4):689-96. PMID: 24466759.
    Citations: 1     Fields:    Translation:AnimalsCells
  14. Soldatov RA, Mironov AA. [Statistical methods of comparative genomic analysis based on diffusion processes]. Biofizika. 2013 Mar-Apr; 58(2):203-9. PMID: 23755544.
    Citations:    Fields:    
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Funded by the NIH National Center for Advancing Translational Sciences through its Clinical and Translational Science Awards Program, grant number UL1TR002541.