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David James Jr. Papke, Ph.D.

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Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
  1. Papke DJ, Lindeman NI, Schrag D, Iorgulescu JB. Underutilization of Guideline-Recommended Mismatch Repair/Microsatellite Instability Biomarker Testing in Advanced Colorectal Cancer. Cancer Epidemiol Biomarkers Prev. 2022 Sep 02; 31(9):1746-1751. PMID: 35767976; PMCID: PMC9444979.
    Citations:    Fields:    
  2. Papke DJ, Sholl LM, Doyle LA, Fletcher CDM, Hornick JL. Gastroesophageal Glomus Tumors: Clinicopathologic and Molecular Genetic Analysis of 26 Cases With a Proposal for Malignancy Criteria. Am J Surg Pathol. 2022 10 01; 46(10):1436-1446. PMID: 35703141.
    Citations:    Fields:    
  3. González IA, Fuller LD, Zhang X, Papke DJ, Zhao L, Zhang D, Liao X, Liu X, Fiel MI, Zhang X. Development of a Scoring System to Differentiate Amiodarone-Induced Liver Injury From Alcoholic Steatohepatitis. Am J Clin Pathol. 2022 Mar 03; 157(3):434-442. PMID: 34596220.
    Citations:    Fields:    Translation:Humans
  4. Papke DJ Jr, Fletcher CDM. Vascular neoplasms of the breast. Diagnostic Histopathology. 2022; 28(3):161-169.
  5. Papke DJ, Forgó E, Charville GW, Hornick JL. PDGFRA Immunohistochemistry Predicts PDGFRA Mutations in Gastrointestinal Stromal Tumors. Am J Surg Pathol. 2022 01 01; 46(1):3-10. PMID: 33859072.
    Citations: 1     Fields:    Translation:Humans
  6. Papke DJ, Dickson BC, Sholl L, Fletcher CDM. Pseudoendocrine Sarcoma: Clinicopathologic Analysis of 23 Cases of a Distinctive Soft Tissue Neoplasm With Metastatic Potential, Recurrent CTNNB1 Mutations, and a Predilection for Truncal Locations. Am J Surg Pathol. 2022 01 01; 46(1):33-43. PMID: 34081037.
    Citations: 2     Fields:    Translation:Humans
  7. Papke DJ, Hornick JL. Recent advances in the diagnosis, classification and molecular pathogenesis of cutaneous mesenchymal neoplasms. Histopathology. 2022 Jan; 80(1):216-232. PMID: 34958499.
    Citations:    Fields:    Translation:Humans
  8. Papke DJ, Bredella MA, Lozano-Calderon S, Oliveira AM, Lennerz J, Nielsen GP. Aneurysmal bone cyst with an unusual clinical presentation and a novel VDR-USP6 fusion. Genes Chromosomes Cancer. 2021 12; 60(12):833-836. PMID: 34369017.
    Citations:    Fields:    Translation:HumansCells
  9. Papke DJ, Oliveira AM, Chou MM, Fletcher CDM. Morphologically malignant nodular fasciitis with CALD1-USP6 fusion. Virchows Arch. 2021 Nov; 479(5):1007-1012. PMID: 34213575.
    Citations:    Fields:    Translation:HumansCells
  10. Papke DJ, Fisch AS, Ranganathan S, O'Neill A, Breen M, Church AJ, Perez-Atayde AR, Al-Ibraheemi A. Undifferentiated Embryonal Sarcoma of the Liver With Rhabdoid Morphology Mimicking Carcinoma: Expanding the Morphologic Spectrum or a Distinct Variant? Pediatr Dev Pathol. 2021 Nov-Dec; 24(6):564-569. PMID: 34121507.
    Citations: 1     Fields:    Translation:Humans
  11. Dolan RD, McCarty TR, Papke DJ, Thompson CC. Drainage of gastric intramural abscesses using lumen-apposing metal stents. VideoGIE. 2021 Sep; 6(9):407-409. PMID: 34527838; PMCID: PMC8430045.
    Citations:    
  12. Papke DJ, Dong F, Zhang X, Kozielski R, Basturk O, Fletcher CDM, Zhao L. Calcifying nested stromal-epithelial tumor: a clinicopathologic and molecular genetic study of eight cases highlighting metastatic potential and recurrent CTNNB1 and TERT promoter alterations. Mod Pathol. 2021 09; 34(9):1696-1703. PMID: 33994539.
    Citations: 1     Fields:    Translation:HumansCells
  13. Papke DJ, Hornick JL. Recent developments in gastroesophageal mesenchymal tumours. Histopathology. 2021 Jan; 78(1):171-186. PMID: 33382494.
    Citations: 2     Fields:    Translation:Humans
  14. Papke DJ, Lohmann S, Downing M, Hufnagl P, Mutter GL. Computational augmentation of neoplastic endometrial glands in digital pathology displays. J Pathol. 2021 03; 253(3):258-267. PMID: 33165914.
    Citations: 1     Fields:    Translation:Humans
  15. Papke DJ, Al-Ibraheemi A, Fletcher CDM. Plexiform Myofibroblastoma: Clinicopathologic Analysis of 36 Cases of a Distinctive Benign Tumor of Soft Tissue Affecting Mainly Children and Young Adults. Am J Surg Pathol. 2020 11; 44(11):1469-1478. PMID: 32618598.
    Citations: 2     Fields:    Translation:Humans
  16. Fujiyoshi K, Väyrynen JP, Borowsky J, Papke DJ, Arima K, Haruki K, Kishikawa J, Akimoto N, Ugai T, Lau MC, Gu S, Shi S, Zhao M, Da Silva AFL, Twombly TS, Nan H, Meyerhardt JA, Song M, Zhang X, Wu K, Chan AT, Fuchs CS, Lennerz JK, Giannakis M, Nowak JA, Ogino S. Tumour budding, poorly differentiated clusters, and T-cell response in colorectal cancer. EBioMedicine. 2020 Jul; 57:102860. PMID: 32652320.
    Citations: 13     Fields:    Translation:HumansCells
  17. Downing MJ, Papke DJ, Tyekucheva S, Mutter GL. A New Classification of Benign, Premalignant, and Malignant Endometrial Tissues Using Machine Learning Applied to 1413 Candidate Variables. Int J Gynecol Pathol. 2020 Jul; 39(4):333-343. PMID: 31157686.
    Citations:    Fields:    Translation:HumansCells
  18. Papke DJ, Hung YP, Schaefer IM, Bredella MA, Charville GW, Reith JD, Fletcher CDM, Nielsen GP, Hornick JL. Clinicopathologic characterization of malignant chondroblastoma: a neoplasm with locally aggressive behavior and metastatic potential that closely mimics chondroblastoma-like osteosarcoma. Mod Pathol. 2020 11; 33(11):2295-2306. PMID: 32601382.
    Citations:    Fields:    Translation:Humans
  19. Papke DJ, Hornick JL. What is new in endothelial neoplasia? Virchows Arch. 2020 Jan; 476(1):17-28. PMID: 31463731.
    Citations: 3     Fields:    Translation:Humans
  20. Christakis AG, Papke DJ, Nowak JA, Yurgelun MB, Agoston AT, Lindeman NI, MacConaill LE, Sholl LM, Dong F. Targeted Cancer Next-Generation Sequencing as a Primary Screening Tool for Microsatellite Instability and Lynch Syndrome in Upper Gastrointestinal Tract Cancers. Cancer Epidemiol Biomarkers Prev. 2019 07; 28(7):1246-1251. PMID: 31028081.
    Citations: 3     Fields:    Translation:HumansCells
  21. Papke DJ, Jo VY. Practical Application of Cytology and Core Biopsy in the Diagnosis of Mesenchymal Tumors. Surg Pathol Clin. 2019 Mar; 12(1):227-248. PMID: 30709446.
    Citations: 1     Fields:    Translation:Humans
  22. Papke DJ, Nowak JA, Yurgelun MB, Frieden A, Srivastava A, Lindeman NI, Sholl LM, MacConaill LE, Dong F. Validation of a targeted next-generation sequencing approach to detect mismatch repair deficiency in colorectal adenocarcinoma. Mod Pathol. 2018 12; 31(12):1882-1890. PMID: 29955144.
    Citations: 12     Fields:    Translation:HumansCells
  23. Granter SR, Papke DJ. Opinion: Medical misinformation in the era of Google: Computational approaches to a pervasive problem. Proc Natl Acad Sci U S A. 2018 06 19; 115(25):6318-6321. PMID: 29921726; PMCID: PMC6016772.
    Citations: 1     Fields:    Translation:Humans
  24. Vgontzas A, Papke DJ, Bernstein CA. Giant Cell Arteritis. Headache. 2018 Jun; 58(6):883-884. PMID: 29924413.
    Citations:    Fields:    Translation:Humans
  25. Granter SR, Beck AH, Papke DJ. Straw Men, Deep Learning, and the Future of the Human Microscopist: Response to "Artificial Intelligence and the Pathologist: Future Frenemies?" Arch Pathol Lab Med. 2017 05; 141(5):624. PMID: 28447901.
    Citations: 3     Fields:    Translation:Humans
  26. Granter SR, Beck AH, Papke DJ. AlphaGo, Deep Learning, and the Future of the Human Microscopist. Arch Pathol Lab Med. 2017 05; 141(5):619-621. PMID: 28447900.
    Citations: 11     Fields:    Translation:Humans
  27. Papke D, McNussen PJ, Rasheed M, Tsipursky MS, Labriola LT. A Case of Unilateral Optic Neuropathy Following Influenza Vaccination. Semin Ophthalmol. 2017; 32(4):517-523. PMID: 27124272.
    Citations: 1     Fields:    Translation:HumansCellsPHPublic Health
  28. Papke D, Grosman C. The role of intracellular linkers in gating and desensitization of human pentameric ligand-gated ion channels. J Neurosci. 2014 May 21; 34(21):7238-52. PMID: 24849357.
    Citations: 20     Fields:    Translation:HumansAnimalsCells
  29. Papke D, Grosman C. Phys. News. Is the desensitization of postsynaptic receptor channels relevant? 90, 32-36. 2013; 90:32-36.
  30. Gonzalez-Gutierrez G, Lukk T, Agarwal V, Papke D, Nair SK, Grosman C. Mutations that stabilize the open state of the Erwinia chrisanthemi ligand-gated ion channel fail to change the conformation of the pore domain in crystals. Proc Natl Acad Sci U S A. 2012 Apr 17; 109(16):6331-6. PMID: 22474383.
    Citations: 59     Fields:    Translation:HumansAnimalsCells
  31. Papke D, Gonzalez-Gutierrez G, Grosman C. Desensitization of neurotransmitter-gated ion channels during high-frequency stimulation: a comparative study of Cys-loop, AMPA and purinergic receptors. J Physiol. 2011 Apr 01; 589(Pt 7):1571-85. PMID: 21300749.
    Citations: 21     Fields:    Translation:HumansAnimalsCells
  32. Toghraee R, Lee KI, Papke D, Chiu SW, Jakobsson E, Ravaioli U. SIMULATION OF ION CONDUCTION IN a-HEMOLYSIN NANOPORES WITH COVALENTLY ATTACHED ß-CYCLODEXTRIN BASED ON BOLTZMANN TRANSPORT MONTE CARLO MODEL. J Comput Theor Nanosci. 2010 Dec; 7(12):2555-2567. PMID: 20938493.
    Citations:    
  33. Wang HL, Toghraee R, Papke D, Cheng XL, McCammon JA, Ravaioli U, Sine SM. Single-channel current through nicotinic receptor produced by closure of binding site C-loop. Biophys J. 2009 May 06; 96(9):3582-90. PMID: 19413963.
    Citations: 22     Fields:    Translation:HumansAnimalsCells
  34. Srivastava SN, Thompson KC, Antonsen EL, Qiu H, Spencer JB, Papke D, Ruzic DN. Lifetime measurements on collector optics from Xe and Sn extreme ultraviolet (EUV) sources. J. Appl. Phys. 023301. 2007; 102.
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Funded by the NIH National Center for Advancing Translational Sciences through its Clinical and Translational Science Awards Program, grant number UL1TR002541.