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Peter Kerpedjiev, Ph.D.

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  1. Kerpedjiev P, Abdennur N, Lekschas F, McCallum C, Dinkla K, Strobelt H, Luber JM, Ouellette SB, Azhir A, Kumar N, Hwang J, Lee S, Alver BH, Pfister H, Mirny LA, Park PJ, Gehlenborg N. HiGlass: web-based visual exploration and analysis of genome interaction maps. Genome Biol. 2018 08 24; 19(1):125. PMID: 30143029.
    View in: PubMed
  2. Lekschas F, Bach B, Kerpedjiev P, Gehlenborg N, Pfister H. HiPiler: Visual Exploration of Large Genome Interaction Matrices with Interactive Small Multiples. IEEE Trans Vis Comput Graph. 2018 Jan; 24(1):522-531. PMID: 28866592.
    View in: PubMed
  3. Alkan F, Wenzel A, Palasca O, Kerpedjiev P, Rudebeck AF, Stadler PF, Hofacker IL, Gorodkin J. RIsearch2: suffix array-based large-scale prediction of RNA-RNA interactions and siRNA off-targets. Nucleic Acids Res. 2017 May 05; 45(8):e60. PMID: 28108657.
    View in: PubMed
  4. Kerpedjiev P, Hammer S, Hofacker IL. Forna (force-directed RNA): Simple and effective online RNA secondary structure diagrams. Bioinformatics. 2015 Oct 15; 31(20):3377-9. PMID: 26099263; PMCID: PMC4595900.
  5. Kerpedjiev P, Höner Zu Siederdissen C, Hofacker IL. Predicting RNA 3D structure using a coarse-grain helix-centered model. RNA. 2015 Jun; 21(6):1110-21. PMID: 25904133; PMCID: PMC4436664.
  6. Kerpedjiev P, Frellsen J, Lindgreen S, Krogh A. Adaptable probabilistic mapping of short reads using position specific scoring matrices. BMC Bioinformatics. 2014 Apr 09; 15:100. PMID: 24717095; PMCID: PMC4021105.
  7. Jakobsen TH, Hansen MA, Jensen PØ, Hansen L, Riber L, Cockburn A, Kolpen M, Rønne Hansen C, Ridderberg W, Eickhardt S, Hansen M, Kerpedjiev P, Alhede M, Qvortrup K, Burmølle M, Moser C, Kühl M, Ciofu O, Givskov M, Sørensen SJ, Høiby N, Bjarnsholt T. Complete genome sequence of the cystic fibrosis pathogen Achromobacter xylosoxidans NH44784-1996 complies with important pathogenic phenotypes. PLoS One. 2013; 8(7):e68484. PMID: 23894309; PMCID: PMC3718787.
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