Harvard Catalyst Profiles

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Lily Chylek, Ph.D.


Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
  1. Chylek LA. Using Mechanistic Models for Analysis of Proteomic Data. Methods Mol Biol. 2019; 1945:265-270. PMID: 30945251.
  2. Lin YT, Chylek LA, Lemons NW, Hlavacek WS. Using Equation-Free Computation to Accelerate Network-Free Stochastic Simulation of Chemical Kinetics. J Phys Chem B. 2018 06 21; 122(24):6351-6356. PMID: 29851484.
    Citations:    Fields:    
  3. Harmon B, Chylek LA, Liu Y, Mitra ED, Mahajan A, Saada EA, Schudel BR, Holowka DA, Baird BA, Wilson BS, Hlavacek WS, Singh AK. Timescale Separation of Positive and Negative Signaling Creates History-Dependent Responses to IgE Receptor Stimulation. Sci Rep. 2017 Nov 14; 7(1):15586. PMID: 29138425.
    Citations:    Fields:    
  4. Thomas BR, Chylek LA, Colvin J, Sirimulla S, Clayton AH, Hlavacek WS, Posner RG. BioNetFit: a fitting tool compatible with BioNetGen, NFsim and distributed computing environments. Bioinformatics. 2016 03 01; 32(5):798-800. PMID: 26556387.
    Citations: 8     Fields:    
  5. Chylek LA, Harris LA, Faeder JR, Hlavacek WS. Modeling for (physical) biologists: an introduction to the rule-based approach. Phys Biol. 2015 Jul 16; 12(4):045007. PMID: 26178138.
    Citations: 7     Fields:    Translation:Cells
  6. Chylek LA, Akimov V, Dengjel J, Rigbolt KT, Hu B, Hlavacek WS, Blagoev B. Phosphorylation site dynamics of early T-cell receptor signaling. PLoS One. 2014; 9(8):e104240. PMID: 25147952.
    Citations: 16     Fields:    Translation:HumansCells
  7. Chylek LA, Holowka DA, Baird BA, Hlavacek WS. An Interaction Library for the FceRI Signaling Network. Front Immunol. 2014; 5:172. PMID: 24782869.
    Citations: 2     
  8. Chylek LA, Wilson BS, Hlavacek WS. Modeling biomolecular site dynamics in immunoreceptor signaling systems. Adv Exp Med Biol. 2014; 844:245-62. PMID: 25480645.
    Citations: 1     Fields:    Translation:HumansAnimalsCells
  9. Chylek LA, Harris LA, Tung CS, Faeder JR, Lopez CF, Hlavacek WS. Rule-based modeling: a computational approach for studying biomolecular site dynamics in cell signaling systems. Wiley Interdiscip Rev Syst Biol Med. 2014 Jan-Feb; 6(1):13-36. PMID: 24123887.
    Citations: 25     Fields:    Translation:Cells
  10. Chylek LA. Decoding the language of phosphorylation site dynamics. Sci Signal. 2013 May 07; 6(274):jc2. PMID: 23652201.
    Citations: 3     Fields:    Translation:HumansAnimalsCells
  11. Chylek LA, Hu B, Blinov ML, Emonet T, Faeder JR, Goldstein B, Gutenkunst RN, Haugh JM, Lipniacki T, Posner RG, Yang J, Hlavacek WS. Guidelines for visualizing and annotating rule-based models. Mol Biosyst. 2011 Oct; 7(10):2779-95. PMID: 21647530.
    Citations: 20     Fields:    Translation:Cells
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Funded by the NIH National Center for Advancing Translational Sciences through its Clinical and Translational Science Awards Program, grant number UL1TR002541.