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Richard Rainer Stein, Ph.D.

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Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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  1. Stein RR, Tanoue T, Szabady RL, Bhattarai SK, Olle B, Norman JM, Suda W, Oshima K, Hattori M, Gerber GK, Sander C, Honda K, Bucci V. Computer-guided design of optimal microbial consortia for immune system modulation. Elife. 2018 Apr 17; 7. PMID: 29664397.
    View in: PubMed
  2. Bucci V, Tzen B, Li N, Simmons M, Tanoue T, Bogart E, Deng L, Yeliseyev V, Delaney ML, Liu Q, Olle B, Stein RR, Honda K, Bry L, Gerber GK. MDSINE: Microbial Dynamical Systems INference Engine for microbiome time-series analyses. Genome Biol. 2016 06 03; 17(1):121. PMID: 27259475; PMCID: PMC4893271.
  3. Stein RR, Marks DS, Sander C. Inferring Pairwise Interactions from Biological Data Using Maximum-Entropy Probability Models. PLoS Comput Biol. 2015 Jul; 11(7):e1004182. PMID: 26225866; PMCID: PMC4520494.
  4. Buffie CG, Bucci V, Stein RR, McKenney PT, Ling L, Gobourne A, No D, Liu H, Kinnebrew M, Viale A, Littmann E, van den Brink MR, Jenq RR, Taur Y, Sander C, Cross JR, Toussaint NC, Xavier JB, Pamer EG. Precision microbiome reconstitution restores bile acid mediated resistance to Clostridium difficile. Nature. 2015 Jan 08; 517(7533):205-8. PMID: 25337874.
    View in: PubMed
  5. Stein RR, Bucci V, Toussaint NC, Buffie CG, R├Ątsch G, Pamer EG, Sander C, Xavier JB. Ecological modeling from time-series inference: insight into dynamics and stability of intestinal microbiota. PLoS Comput Biol. 2013; 9(12):e1003388. PMID: 24348232; PMCID: PMC3861043.
  6. Stein RR, Isambert H. Logistic map analysis of biomolecular network evolution. Phys Rev E Stat Nonlin Soft Matter Phys. 2011 Nov; 84(5 Pt 1):051904. PMID: 22181441.
    View in: PubMed
  7. Isambert H, Stein RR. On the need for widespread horizontal gene transfers under genome size constraint. Biol Direct. 2009 Aug 25; 4:28. PMID: 19703318; PMCID: PMC2740843.
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