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Abhijeet Sonawane, Ph.D.

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Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
  1. Iqbal F, Schlotter F, Becker-Greene D, Lupieri A, Goettsch C, Hutcheson JD, Rogers MA, Itoh S, Halu A, Lee LH, Blaser MC, Mlynarchik AK, Hagita S, Kuraoka S, Chen HY, Engert JC, Passos LSA, Jha PK, Osborn EA, Jaffer FA, Body SC, Robson SC, Thanassoulis G, Aikawa M, Singh SA, Sonawane AR, Aikawa E. Sortilin enhances fibrosis and calcification in aortic valve disease by inducing interstitial cell heterogeneity. Eur Heart J. 2023 Jan 20. PMID: 36660854.
    Citations:    Fields:    
  2. Atkins SK, Sonawane AR, Brouwhuis R, Barrientos J, Ha A, Rogers M, Tanaka T, Okui T, Kuraoka S, Singh SA, Aikawa M, Aikawa E. Induced pluripotent stem cell-derived smooth muscle cells to study cardiovascular calcification. Front Cardiovasc Med. 2022; 9:925777. PMID: 35958427.
    Citations:    
  3. Sonawane AR, Aikawa E, Aikawa M. Connections for Matters of the Heart: Network Medicine in Cardiovascular Diseases. Front Cardiovasc Med. 2022; 9:873582. PMID: 35665246; PMCID: PMC9160390.
    Citations:    
  4. Shrestha S, Lamattina A, Pacheco-Rodriguez G, Ng J, Liu X, Sonawane A, Imani J, Qiu W, Kosmas K, Louis P, Hentschel A, Steagall WK, Onishi R, Christou H, Henske EP, Glass K, Perrella MA, Moss J, Tantisira K, El-Chemaly S. ETV2 regulates PARP-1 binding protein to induce ER stress-mediated death in tuberin-deficient cells. Life Sci Alliance. 2022 05; 5(5). PMID: 35181635; PMCID: PMC8860090.
    Citations:    Fields:    Translation:Humans
  5. Ben Guebila M, Lopes-Ramos CM, Weighill D, Sonawane AR, Burkholz R, Shamsaei B, Platig J, Glass K, Kuijjer ML, Quackenbush J. GRAND: a database of gene regulatory network models across human conditions. Nucleic Acids Res. 2022 01 07; 50(D1):D610-D621. PMID: 34508353; PMCID: PMC8728257.
    Citations: 5     Fields:    Translation:Humans
  6. Sonawane AR, DeMeo DL, Quackenbush J, Glass K. Constructing gene regulatory networks using epigenetic data. NPJ Syst Biol Appl. 2021 12 09; 7(1):45. PMID: 34887443; PMCID: PMC8660777.
    Citations: 4     Fields:    
  7. Kuraoka S, Higashi H, Yanagihara Y, Sonawane AR, Mukai S, Mlynarchik AK, Whelan MC, Hottiger MO, Nasir W, Delanghe B, Aikawa M, Singh SA. A Novel Spectral Annotation Strategy Streamlines Reporting of Mono-ADP-ribosylated Peptides Derived from Mouse Liver and Spleen in Response to IFN-?. Mol Cell Proteomics. 2022 04; 21(4):100153. PMID: 34592425; PMCID: PMC9014395.
    Citations: 3     Fields:    Translation:Animals
  8. Peng C, DuPre N, VoPham T, Heng YJ, Baker GM, Rubadue CA, Glass K, Sonawane A, Zeleznik O, Kraft P, Hankinson SE, Eliassen AH, Hart JE, Laden F, Tamimi RM. Low dose environmental radon exposure and breast tumor gene expression. BMC Cancer. 2020 Jul 28; 20(1):695. PMID: 32723380.
    Citations: 1     Fields:    Translation:HumansCellsPHPublic Health
  9. Lopes-Ramos CM, Chen CY, Kuijjer ML, Paulson JN, Sonawane AR, Fagny M, Platig J, Glass K, Quackenbush J, DeMeo DL. Sex Differences in Gene Expression and Regulatory Networks across 29 Human Tissues. Cell Rep. 2020 06 23; 31(12):107795. PMID: 32579922.
    Citations: 53     Fields:    Translation:HumansCells
  10. Samieri C, Sonawane AR, Lefèvre-Arbogast S, Helmer C, Grodstein F, Glass K. Using network science tools to identify novel diet patterns in prodromal dementia. Neurology. 2020 05 12; 94(19):e2014-e2025. PMID: 32321763.
    Citations: 6     Fields:    Translation:Humans
  11. Sonawane AR, Tian L, Chu CY, Qiu X, Wang L, Holden-Wiltse J, Grier A, Gill SR, Caserta MT, Falsey AR, Topham DJ, Walsh EE, Mariani TJ, Weiss ST, Silverman EK, Glass K, Liu YY. Microbiome-Transcriptome Interactions Related to Severity of Respiratory Syncytial Virus Infection. Sci Rep. 2019 09 25; 9(1):13824. PMID: 31554845.
    Citations: 17     Fields:    Translation:HumansCells
  12. Sonawane AR, Weiss ST, Glass K, Sharma A. Network Medicine in the Age of Biomedical Big Data. Front Genet. 2019; 10:294. PMID: 31031797; PMCID: PMC6470635.
    Citations: 51     
  13. Peng C, Van Meel ER, Cardenas A, Rifas-Shiman SL, Sonawane AR, Glass KR, Gold DR, Platts-Mills TA, Lin X, Oken E, Hivert MF, Baccarelli AA, De Jong NW, Felix JF, Jaddoe VW, Duijts L, Litonjua AA, DeMeo DL. Epigenome-wide association study reveals methylation pathways associated with childhood allergic sensitization. Epigenetics. 2019 05; 14(5):445-466. PMID: 30876376.
    Citations: 15     Fields:    Translation:HumansCells
  14. Huang T, Glass K, Zeleznik OA, Kang JH, Ivey KL, Sonawane AR, Birmann BM, Hersh CP, Hu FB, Tworoger SS. A Network Analysis of Biomarkers for Type 2 Diabetes. Diabetes. 2019 02; 68(2):281-290. PMID: 30409783; PMCID: PMC6341308.
    Citations: 12     Fields:    Translation:Humans
  15. Sonawane AR, Platig J, Fagny M, Chen CY, Paulson JN, Lopes-Ramos CM, DeMeo DL, Quackenbush J, Glass K, Kuijjer ML. Understanding Tissue-Specific Gene Regulation. Cell Rep. 2017 Oct 24; 21(4):1077-1088. PMID: 29069589.
    Citations: 120     Fields:    Translation:HumansCells
  16. Paulson JN, Chen CY, Lopes-Ramos CM, Kuijjer ML, Platig J, Sonawane AR, Fagny M, Glass K, Quackenbush J. Tissue-aware RNA-Seq processing and normalization for heterogeneous and sparse data. BMC Bioinformatics. 2017 Oct 03; 18(1):437. PMID: 28974199; PMCID: PMC5627434.
    Citations: 18     Fields:    Translation:Humans
  17. Lopes-Ramos CM, Paulson JN, Chen CY, Kuijjer ML, Fagny M, Platig J, Sonawane AR, DeMeo DL, Quackenbush J, Glass K. Regulatory network changes between cell lines and their tissues of origin. BMC Genomics. 2017 Sep 12; 18(1):723. PMID: 28899340; PMCID: PMC5596945.
    Citations: 20     Fields:    Translation:HumansCells
  18. Fagny M, Paulson JN, Kuijjer ML, Sonawane AR, Chen CY, Lopes-Ramos CM, Glass K, Quackenbush J, Platig J. Exploring regulation in tissues with eQTL networks. Proc Natl Acad Sci U S A. 2017 09 12; 114(37):E7841-E7850. PMID: 28851834; PMCID: PMC5604022.
    Citations: 46     Fields:    Translation:HumansCells
  19. Kishore V, Sonawane AR, Santhanam MS. Manipulation of extreme events on scale-free networks. Phys Rev E Stat Nonlin Soft Matter Phys. 2013 Jul; 88(1):014801. PMID: 23944597.
    Citations: 2     Fields:    
  20. Abhijeet R. Sonawane , A. Bhattacharyay, M. S. Santhanam, G. Ambika. Evolving networks with bimodal degree distribution. The European Physical Journal B. 2012; (85):118. View Publication.
  21. Sonawane AR, Gade PM. Dynamic phase transition from localized to spatiotemporal chaos in coupled circle map with feedback. Chaos. 2011 Mar; 21(1):013122. PMID: 21456836.
    Citations:    Fields:    
  22. Sonawane AR. Directed percolation criticality due to stochastic switching between attractive and repulsive coupling in coupled circle maps. Phys Rev E Stat Nonlin Soft Matter Phys. 2010 May; 81(5 Pt 2):056206. PMID: 20866306.
    Citations:    Fields:    
  23. Jampa MP, Sonawane AR, Gade PM, Sinha S. Synchronization in a network of model neurons. Phys Rev E Stat Nonlin Soft Matter Phys. 2007 Feb; 75(2 Pt 2):026215. PMID: 17358413.
    Citations:    Fields:    
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Funded by the NIH National Center for Advancing Translational Sciences through its Clinical and Translational Science Awards Program, grant number UL1TR002541.