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Daniel Hochbaum, Ph.D.

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Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
  1. Cortopassi MD, Ramachandran D, Rubio WB, Hochbaum D, Sabatini BL, Banks AS. Analysis of Thermogenesis Experiments with CalR. Methods Mol Biol. 2022; 2448:43-72. PMID: 35167089.
    Citations:    Fields:    Translation:Animals
  2. Boulting GL, Durresi E, Ataman B, Sherman MA, Mei K, Harmin DA, Carter AC, Hochbaum DR, Granger AJ, Engreitz JM, Hrvatin S, Blanchard MR, Yang MG, Griffith EC, Greenberg ME. Activity-dependent regulome of human GABAergic neurons reveals new patterns of gene regulation and neurological disease heritability. Nat Neurosci. 2021 03; 24(3):437-448. PMID: 33542524; PMCID: PMC7933108.
    Citations: 10     Fields:    Translation:HumansCells
  3. Wallace ML, Huang KW, Hochbaum D, Hyun M, Radeljic G, Sabatini BL. Anatomical and single-cell transcriptional profiling of the murine habenular complex. Elife. 2020 02 11; 9. PMID: 32043968; PMCID: PMC7012610.
    Citations: 24     Fields:    Translation:AnimalsCells
  4. Mandelbaum G, Taranda J, Haynes TM, Hochbaum DR, Huang KW, Hyun M, Umadevi Venkataraju K, Straub C, Wang W, Robertson K, Osten P, Sabatini BL. Distinct Cortical-Thalamic-Striatal Circuits through the Parafascicular Nucleus. Neuron. 2019 05 08; 102(3):636-652.e7. PMID: 30905392; PMCID: PMC7164542.
    Citations: 53     Fields:    Translation:AnimalsCells
  5. Piatkevich KD, Jung EE, Straub C, Linghu C, Park D, Suk HJ, Hochbaum DR, Goodwin D, Pnevmatikakis E, Pak N, Kawashima T, Yang CT, Rhoades JL, Shemesh O, Asano S, Yoon YG, Freifeld L, Saulnier JL, Riegler C, Engert F, Hughes T, Drobizhev M, Szabo B, Ahrens MB, Flavell SW, Sabatini BL, Boyden ES. Publisher Correction: A robotic multidimensional directed evolution approach applied to fluorescent voltage reporters. Nat Chem Biol. 2018 Sep; 14(9):901. PMID: 29520042.
    Citations: 3     Fields:    
  6. Hrvatin S, Hochbaum DR, Nagy MA, Cicconet M, Robertson K, Cheadle L, Zilionis R, Ratner A, Borges-Monroy R, Klein AM, Sabatini BL, Greenberg ME. Publisher Correction: Single-cell analysis of experience-dependent transcriptomic states in the mouse visual cortex. Nat Neurosci. 2018 Jul; 21(7):1017. PMID: 29752482.
    Citations:    Fields:    
  7. Piatkevich KD, Jung EE, Straub C, Linghu C, Park D, Suk HJ, Hochbaum DR, Goodwin D, Pnevmatikakis E, Pak N, Kawashima T, Yang CT, Rhoades JL, Shemesh O, Asano S, Yoon YG, Freifeld L, Saulnier JL, Riegler C, Engert F, Hughes T, Drobizhev M, Szabo B, Ahrens MB, Flavell SW, Sabatini BL, Boyden ES. A robotic multidimensional directed evolution approach applied to fluorescent voltage reporters. Nat Chem Biol. 2018 04; 14(4):352-360. PMID: 29483642; PMCID: PMC5866759.
    Citations: 131     Fields:    Translation:HumansAnimalsCells
  8. Hrvatin S, Hochbaum DR, Nagy MA, Cicconet M, Robertson K, Cheadle L, Zilionis R, Ratner A, Borges-Monroy R, Klein AM, Sabatini BL, Greenberg ME. Single-cell analysis of experience-dependent transcriptomic states in the mouse visual cortex. Nat Neurosci. 2018 01; 21(1):120-129. PMID: 29230054; PMCID: PMC5742025.
    Citations: 181     Fields:    Translation:AnimalsCells
  9. Stroud H, Su SC, Hrvatin S, Greben AW, Renthal W, Boxer LD, Nagy MA, Hochbaum DR, Kinde B, Gabel HW, Greenberg ME. Early-Life Gene Expression in Neurons Modulates Lasting Epigenetic States. Cell. 2017 Nov 16; 171(5):1151-1164.e16. PMID: 29056337; PMCID: PMC5693680.
    Citations: 88     Fields:    Translation:HumansAnimalsCells
  10. Cho YK, Zheng G, Augustine GJ, Hochbaum D, Cohen A, Knöpfel T, Pisanello F, Pavone FS, Vellekoop IM, Booth MJ, Hu S, Zhu J, Chen Z, Hoshi Y. Roadmap on neurophotonics. J Opt. 2016 Sep; 18(9). PMID: 28386392; PMCID: PMC5378317.
    Citations: 8     
  11. Zou P, Zhao Y, Douglass AD, Hochbaum DR, Brinks D, Werley CA, Harrison DJ, Campbell RE, Cohen AE. Bright and fast multicoloured voltage reporters via electrochromic FRET. Nat Commun. 2014 Aug 13; 5:4625. PMID: 25118186; PMCID: PMC4134104.
    Citations: 87     Fields:    Translation:HumansAnimalsCells
  12. Hochbaum DR, Zhao Y, Farhi SL, Klapoetke N, Werley CA, Kapoor V, Zou P, Kralj JM, Maclaurin D, Smedemark-Margulies N, Saulnier JL, Boulting GL, Straub C, Cho YK, Melkonian M, Wong GK, Harrison DJ, Murthy VN, Sabatini BL, Boyden ES, Campbell RE, Cohen AE. All-optical electrophysiology in mammalian neurons using engineered microbial rhodopsins. Nat Methods. 2014 Aug; 11(8):825-33. PMID: 24952910.
    Citations: 341     Fields:    Translation:AnimalsCells
  13. Venkatachalam V, Brinks D, Maclaurin D, Hochbaum D, Kralj J, Cohen AE. Flash memory: photochemical imprinting of neuronal action potentials onto a microbial rhodopsin. J Am Chem Soc. 2014 Feb 12; 136(6):2529-37. PMID: 24428326.
    Citations: 16     Fields:    Translation:HumansAnimalsCells
  14. Cohen AE, Hochbaum DR. Measuring membrane voltage with microbial rhodopsins. Methods Mol Biol. 2014; 1071:97-108. PMID: 24052383.
    Citations: 2     Fields:    Translation:HumansAnimalsCells
  15. Kralj JM, Douglass AD, Hochbaum DR, Maclaurin D, Cohen AE. Optical recording of action potentials in mammalian neurons using a microbial rhodopsin. Nat Methods. 2011 Nov 27; 9(1):90-5. PMID: 22120467.
    Citations: 209     Fields:    Translation:HumansAnimalsCells
  16. Hochbaum D, Zhang Y, Stuckenholz C, Labhart P, Alexiadis V, Martin R, Knölker HJ, Fisher AL. DAF-12 regulates a connected network of genes to ensure robust developmental decisions. PLoS Genet. 2011 Jul; 7(7):e1002179. PMID: 21814518.
    Citations: 28     Fields:    Translation:HumansAnimalsCells
  17. Kralj JM, Hochbaum DR, Douglass AD, Cohen AE. Electrical spiking in Escherichia coli probed with a fluorescent voltage-indicating protein. Science. 2011 Jul 15; 333(6040):345-8. PMID: 21764748.
    Citations: 153     Fields:    Translation:Cells
  18. Zuo H, Gandhi M, Edreira MM, Hochbaum D, Nimgaonkar VL, Zhang P, Dipaola J, Evdokimova V, Altschuler DL, Nikiforov YE. Downregulation of Rap1GAP through epigenetic silencing and loss of heterozygosity promotes invasion and progression of thyroid tumors. Cancer Res. 2010 Feb 15; 70(4):1389-97. PMID: 20124489.
    Citations: 48     Fields:    Translation:HumansCells
  19. Tanos T, Marinissen MJ, Leskow FC, Hochbaum D, Martinetto H, Gutkind JS, Coso OA. Phosphorylation of c-Fos by members of the p38 MAPK family. Role in the AP-1 response to UV light. J Biol Chem. 2005 May 13; 280(19):18842-52. PMID: 15708845.
    Citations: 67     Fields:    Translation:HumansAnimalsCells
  20. Kovalovsky D, Refojo D, Liberman AC, Hochbaum D, Pereda MP, Coso OA, Stalla GK, Holsboer F, Arzt E. Activation and induction of NUR77/NURR1 in corticotrophs by CRH/cAMP: involvement of calcium, protein kinase A, and MAPK pathways. Mol Endocrinol. 2002 Jul; 16(7):1638-51. PMID: 12089357.
    Citations: 75     Fields:    Translation:AnimalsCells
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© 2023 President and Fellows of Harvard College
Funded by the NIH National Center for Advancing Translational Sciences through its Clinical and Translational Science Awards Program, grant number UL1TR002541.