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Caleb Stern Weinreb, Ph.D.

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Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
  1. Brann DH, Tsukahara T, Weinreb C, Lipovsek M, Van den Berge K, Gong B, Chance R, Macaulay IC, Chou HJ, Fletcher RB, Das D, Street K, de Bezieux HR, Choi YG, Risso D, Dudoit S, Purdom E, Mill J, Hachem RA, Matsunami H, Logan DW, Goldstein BJ, Grubb MS, Ngai J, Datta SR. Non-neuronal expression of SARS-CoV-2 entry genes in the olfactory system suggests mechanisms underlying COVID-19-associated anosmia. Sci Adv. 2020 07 31; 6(31). PMID: 32937591.
    Citations: 188     Fields:    Translation:HumansAnimalsCellsPHPublic Health
  2. Rodriguez-Fraticelli AE, Weinreb C, Wang SW, Migueles RP, Jankovic M, Usart M, Klein AM, Lowell S, Camargo FD. Single-cell lineage tracing unveils a role for TCF15 in haematopoiesis. Nature. 2020 07; 583(7817):585-589. PMID: 32669716.
    Citations: 14     Fields:    Translation:AnimalsCells
  3. Weinreb C, Klein AM. Lineage reconstruction from clonal correlations. Proc Natl Acad Sci U S A. 2020 07 21; 117(29):17041-17048. PMID: 32632001.
    Citations: 2     Fields:    Translation:AnimalsCells
  4. Cooper KW, Brann DH, Farruggia MC, Bhutani S, Pellegrino R, Tsukahara T, Weinreb C, Joseph PV, Larson ED, Parma V, Albers MW, Barlow LA, Datta SR, Di Pizio A. COVID-19 and the Chemical Senses: Supporting Players Take Center Stage. Neuron. 2020 07 22; 107(2):219-233. PMID: 32640192.
    Citations: 57     Fields:    Translation:HumansAnimalsCellsPHPublic Health
  5. Weinreb C, Rodriguez-Fraticelli A, Camargo FD, Klein AM. Lineage tracing on transcriptional landscapes links state to fate during differentiation. Science. 2020 02 14; 367(6479). PMID: 31974159.
    Citations: 67     Fields:    Translation:AnimalsCells
  6. Briggs JA, Weinreb C, Wagner DE, Megason S, Peshkin L, Kirschner MW, Klein AM. The dynamics of gene expression in vertebrate embryogenesis at single-cell resolution. Science. 2018 06 01; 360(6392). PMID: 29700227.
    Citations: 105     Fields:    Translation:AnimalsCells
  7. Wagner DE, Weinreb C, Collins ZM, Briggs JA, Megason SG, Klein AM. Single-cell mapping of gene expression landscapes and lineage in the zebrafish embryo. Science. 2018 06 01; 360(6392):981-987. PMID: 29700229.
    Citations: 159     Fields:    Translation:Animals
  8. Weinreb C, Wolock S, Klein AM. SPRING: a kinetic interface for visualizing high dimensional single-cell expression data. Bioinformatics. 2018 04 01; 34(7):1246-1248. PMID: 29228172.
    Citations: 78     Fields:    Translation:HumansCells
  9. Dahlin JS, Hamey FK, Pijuan-Sala B, Shepherd M, Lau WWY, Nestorowa S, Weinreb C, Wolock S, Hannah R, Diamanti E, Kent DG, Göttgens B, Wilson NK. A single-cell hematopoietic landscape resolves 8 lineage trajectories and defects in Kit mutant mice. Blood. 2018 05 24; 131(21):e1-e11. PMID: 29588278.
    Citations: 35     Fields:    Translation:AnimalsCells
  10. Tusi BK, Wolock SL, Weinreb C, Hwang Y, Hidalgo D, Zilionis R, Waisman A, Huh JR, Klein AM, Socolovsky M. Population snapshots predict early haematopoietic and erythroid hierarchies. Nature. 2018 03 01; 555(7694):54-60. PMID: 29466336.
    Citations: 99     Fields:    Translation:AnimalsCells
  11. Weinreb C, Wolock S, Tusi BK, Socolovsky M, Klein AM. Fundamental limits on dynamic inference from single-cell snapshots. Proc Natl Acad Sci U S A. 2018 03 06; 115(10):E2467-E2476. PMID: 29463712.
    Citations: 51     Fields:    Translation:AnimalsCells
  12. Rodriguez-Fraticelli AE, Wolock SL, Weinreb CS, Panero R, Patel SH, Jankovic M, Sun J, Calogero RA, Klein AM, Camargo FD. Clonal analysis of lineage fate in native haematopoiesis. Nature. 2018 01 11; 553(7687):212-216. PMID: 29323290.
    Citations: 118     Fields:    Translation:AnimalsCells
  13. Leydon AR, Weinreb C, Venable E, Reinders A, Ward JM, Johnson MA. The Molecular Dialog between Flowering Plant Reproductive Partners Defined by SNP-Informed RNA-Sequencing. Plant Cell. 2017 May; 29(5):984-1006. PMID: 28400492.
    Citations: 8     Fields:    Translation:Animals
  14. Escudero DJ, Lurie MN, Mayer KH, Weinreb C, King M, Galea S, Friedman SR, Marshall BD. Acute HIV infection transmission among people who inject drugs in a mature epidemic setting. AIDS. 2016 10 23; 30(16):2537-2544. PMID: 27490641.
    Citations: 2     Fields:    Translation:HumansPHPublic Health
  15. Weinreb C, Riesselman AJ, Ingraham JB, Gross T, Sander C, Marks DS. 3D RNA and Functional Interactions from Evolutionary Couplings. Cell. 2016 May 05; 165(4):963-75. PMID: 27087444.
    Citations: 44     Fields:    Translation:Cells
  16. Weinreb C, Raphael BJ. Identification of hierarchical chromatin domains. Bioinformatics. 2016 06 01; 32(11):1601-9. PMID: 26315910.
    Citations: 47     Fields:    Translation:Cells
  17. Weinreb C, Oesper L, Raphael BJ. Open adjacencies and k-breaks: detecting simultaneous rearrangements in cancer genomes. BMC Genomics. 2014; 15 Suppl 6:S4. PMID: 25572114.
    Citations: 1     Fields:    Translation:HumansAnimals
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Funded by the NIH National Center for Advancing Translational Sciences through its Clinical and Translational Science Awards Program, grant number UL1TR002541.