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profileSatrajit S Ghosh, Ph.D.

TitleAssistant Professor of Otolaryngology
InstitutionMassachusetts Eye and Ear Infirmary
DepartmentOtolaryngology
AddressMassachusetts Eye & Ear Infrm
ENT Education Office
243 Charles St
Boston MA 02114
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Collapse overview
Satrajit is a Principal Research Scientist at the McGovern Institute for Brain Research at MIT, an Assistant Professor in the Department of Otolaryngology at Harvard Medical School, and a faculty member in the Speech and Hearing Biosciences and Technology program in the Harvard Division of Medical Sciences. His research interests span computer science and neuroimaging, specifically in the areas of applied machine learning, software engineering, and applications of neuroimaging. The primary focus of his research group is to develop knowledge discovery platforms by integrating a set of multidisciplinary projects that span precision medicine in mental health, imaging genetics, machine learning, and dataflow systems for reproducible research. He is a lead architect of the Nipype dataflow platform, an ardent proponent of decentralized and distributed Web solutions for data sharing, querying, and computing, and a strong believer in solving problems through collaboration and crowd-sourcing.


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The research activities and funding listed below are automatically derived from NIH ExPORTER and other sources, which might result in incorrect or missing items. Faculty can login to make corrections and additions.
R01MH109682     (YARKONI, TAL)Sep 23, 2016 - Jul 31, 2021
NIH
NeuroScout: A cloud-based platform for flexible re-analysis of naturalistic fMRI datasets
Role: Co-Investigator

P41EB019936     (KENNEDY, DAVID NELSON)Apr 15, 2016 - Jan 31, 2021
NIH
Center for Reproducible Neuroimaging Computation (CRNC)
Role: Director of Technical Research and Development Project 2: Data models and Integration

R01EB020740     (GHOSH, SATRAJIT SUJIT)Jan 15, 2016 - Nov 30, 2019
NIH/NIBIB
Nipype: Dataflows for Reproducible Biomedical Research
Role: Principal Investigator

U01MH108168     (GABRIELI, JOHN)Sep 16, 2015 - Jun 30, 2019
NIH
Connectomes Related to Anxiety and Depression in Adolescents
Role: Co-Investigator

3R01MH092380-04S1     (PETRYSHEN, TRACEY)Sep 10, 2012 - Jul 31, 2016
NIH
Genetic Determinants of Schizophrenia Intermediate Phenotypes
Role: Co-Investigator

Collapse Bibliographic 
Collapse selected publications
Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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  1. Perrachione TK, Ghosh SS, Ostrovskaya I, Gabrieli JDE, Kovelman I. Phonological Working Memory for Words and Nonwords in Cerebral Cortex. J Speech Lang Hear Res. 2017 Jul 12; 60(7):1959-1979. PMID: 28631005.
    View in: PubMed
  2. Nenning KH, Liu H, Ghosh SS, Sabuncu MR, Schwartz E, Langs G. Diffeomorphic functional brain surface alignment: Functional demons. Neuroimage. 2017 Aug 01; 156:456-465. PMID: 28416451.
    View in: PubMed
  3. Gorgolewski KJ, Alfaro-Almagro F, Auer T, Bellec P, Capota M, Chakravarty MM, Churchill NW, Cohen AL, Craddock RC, Devenyi GA, Eklund A, Esteban O, Flandin G, Ghosh SS, Guntupalli JS, Jenkinson M, Keshavan A, Kiar G, Liem F, Raamana PR, Raffelt D, Steele CJ, Quirion PO, Smith RE, Strother SC, Varoquaux G, Wang Y, Yarkoni T, Poldrack RA. BIDS apps: Improving ease of use, accessibility, and reproducibility of neuroimaging data analysis methods. PLoS Comput Biol. 2017 Mar; 13(3):e1005209. PMID: 28278228.
    View in: PubMed
  4. Klein A, Ghosh SS, Bao FS, Giard J, Häme Y, Stavsky E, Lee N, Rossa B, Reuter M, Chaibub Neto E, Keshavan A. Mindboggling morphometry of human brains. PLoS Comput Biol. 2017 Feb; 13(2):e1005350. PMID: 28231282.
    View in: PubMed
  5. Ghosh SS, Poline JB, Keator DB, Halchenko YO, Thomas AG, Kessler DA, Kennedy DN. A very simple, re-executable neuroimaging publication. F1000Res. 2017; 6:124. PMID: 28781753.
    View in: PubMed
  6. O'Connor D, Potler NV, Kovacs M, Xu T, Ai L, Pellman J, Vanderwal T, Parra LC, Cohen S, Ghosh S, Escalera J, Grant-Villegas N, Osman Y, Bui A, Craddock RC, Milham MP. The Healthy Brain Network Serial Scanning Initiative: a resource for evaluating inter-individual differences and their reliabilities across scan conditions and sessions. Gigascience. 2017 Feb 01; 6(2):1-14. PMID: 28369458.
    View in: PubMed
  7. Perrachione TK, Del Tufo SN, Winter R, Murtagh J, Cyr A, Chang P, Halverson K, Ghosh SS, Christodoulou JA, Gabrieli JD. Dysfunction of Rapid Neural Adaptation in Dyslexia. Neuron. 2016 Dec 21; 92(6):1383-1397. PMID: 28009278.
    View in: PubMed
  8. Maumet C, Auer T, Bowring A, Chen G, Das S, Flandin G, Ghosh S, Glatard T, Gorgolewski KJ, Helmer KG, Jenkinson M, Keator DB, Nichols BN, Poline JB, Reynolds R, Sochat V, Turner J, Nichols TE. Sharing brain mapping statistical results with the neuroimaging data model. Sci Data. 2016 12 06; 3:160102. PMID: 27922621.
    View in: PubMed
  9. Margulies DS, Ghosh SS, Goulas A, Falkiewicz M, Huntenburg JM, Langs G, Bezgin G, Eickhoff SB, Castellanos FX, Petrides M, Jefferies E, Smallwood J. Situating the default-mode network along a principal gradient of macroscale cortical organization. Proc Natl Acad Sci U S A. 2016 Nov 01; 113(44):12574-12579. PMID: 27791099.
    View in: PubMed
  10. Gorgolewski KJ, Auer T, Calhoun VD, Craddock RC, Das S, Duff EP, Flandin G, Ghosh SS, Glatard T, Halchenko YO, Handwerker DA, Hanke M, Keator D, Li X, Michael Z, Maumet C, Nichols BN, Nichols TE, Pellman J, Poline JB, Rokem A, Schaefer G, Sochat V, Triplett W, Turner JA, Varoquaux G, Poldrack RA. The brain imaging data structure, a format for organizing and describing outputs of neuroimaging experiments. Sci Data. 2016 Jun 21; 3:160044. PMID: 27326542; PMCID: PMC4978148.
  11. Sitek KR, Cai S, Beal DS, Perkell JS, Guenther FH, Ghosh SS. Decreased Cerebellar-Orbitofrontal Connectivity Correlates with Stuttering Severity: Whole-Brain Functional and Structural Connectivity Associations with Persistent Developmental Stuttering. Front Hum Neurosci. 2016; 10:190. PMID: 27199712; PMCID: PMC4855981.
  12. Allen GI, Amoroso N, Anghel C, Balagurusamy V, Bare CJ, Beaton D, Bellotti R, Bennett DA, Boehme KL, Boutros PC, Caberlotto L, Caloian C, Campbell F, Chaibub Neto E, Chang YC, Chen B, Chen CY, Chien TY, Clark T, Das S, Davatzikos C, Deng J, Dillenberger D, Dobson RJ, Dong Q, Doshi J, Duma D, Errico R, Erus G, Everett E, Fardo DW, Friend SH, Fröhlich H, Gan J, St George-Hyslop P, Ghosh SS, Glaab E, Green RC, Guan Y, Hong MY, Huang C, Hwang J, Ibrahim J, Inglese P, Iyappan A, Jiang Q, Katsumata Y, Kauwe JS, Klein A, Kong D, Krause R, Lalonde E, Lauria M, Lee E, Lin X, Liu Z, Livingstone J, Logsdon BA, Lovestone S, Ma TW, Malhotra A, Mangravite LM, Maxwell TJ, Merrill E, Nagorski J, Namasivayam A, Narayan M, Naz M, Newhouse SJ, Norman TC, Nurtdinov RN, Oyang YJ, Pawitan Y, Peng S, Peters MA, Piccolo SR, Praveen P, Priami C, Sabelnykova VY, Senger P, Shen X, Simmons A, Sotiras A, Stolovitzky G, Tangaro S, Tateo A, Tung YA, Tustison NJ, Varol E, Vradenburg G, Weiner MW, Xiao G, Xie L, Xie Y, Xu J, Yang H, Zhan X, Zhou Y, Zhu F, Zhu H, Zhu S. Crowdsourced estimation of cognitive decline and resilience in Alzheimer's disease. Alzheimers Dement. 2016 Jun; 12(6):645-53. PMID: 27079753.
    View in: PubMed
  13. Christodoulou JA, Murtagh J, Cyr A, Perrachione TK, Chang P, Halverson K, Hook P, Yendiki A, Ghosh S, Gabrieli JDE. Relation of white-matter microstructure to reading ability and disability in beginning readers. Neuropsychology. 2017 Jul; 31(5):508-515. PMID: 26949926.
    View in: PubMed
  14. Ciccarelli G, Quatieri TF, Ghosh SS. Seventeenth Annual Conference of the International Speech Communication Association. Neurophysiological Vocal Source Modeling for Biomarkers of Disease. 2016.
  15. Langs G, Golland P, Ghosh SS. Predicting Activation Across Individuals with Resting-State Functional Connectivity Based Multi-Atlas Label Fusion. Med Image Comput Comput Assist Interv. 2015 Oct; 9350:313-320. PMID: 26855977.
    View in: PubMed
  16. Whitfield-Gabrieli S, Ghosh SS, Nieto-Castanon A, Saygin Z, Doehrmann O, Chai XJ, Reynolds GO, Hofmann SG, Pollack MH, Gabrieli JD. Brain connectomics predict response to treatment in social anxiety disorder. Mol Psychiatry. 2016 May; 21(5):680-5. PMID: 26260493.
    View in: PubMed
  17. Gorgolewski KJ, Varoquaux G, Rivera G, Schwartz Y, Sochat VV, Ghosh SS, Maumet C, Nichols TE, Poline JB, Yarkoni T, Margulies DS, Poldrack RA. NeuroVault.org: A repository for sharing unthresholded statistical maps, parcellations, and atlases of the human brain. Neuroimage. 2016 Jan 01; 124(Pt B):1242-4. PMID: 25869863; PMCID: PMC4806527.
  18. Gorgolewski KJ, Varoquaux G, Rivera G, Schwarz Y, Ghosh SS, Maumet C, Sochat VV, Nichols TE, Poldrack RA, Poline JB, Yarkoni T, Margulies DS. NeuroVault.org: a web-based repository for collecting and sharing unthresholded statistical maps of the human brain. Front Neuroinform. 2015; 9:8. PMID: 25914639; PMCID: PMC4392315.
  19. Gabrieli JD, Ghosh SS, Whitfield-Gabrieli S. Prediction as a humanitarian and pragmatic contribution from human cognitive neuroscience. Neuron. 2015 Jan 07; 85(1):11-26. PMID: 25569345; PMCID: PMC4287988.
  20. Williamson JR, Quatieri TF, Helfer BS, Perricone J, Ghosh SS, Ciccarelli G, Mehta DD. Sixteenth Annual Conference of the International Speech Communication Association. Segment-dependent dynamics in predicting Parkinson’s disease. 2015.
  21. Christodoulou JA, Del Tufo SN, Lymberis J, Saxler PK, Ghosh SS, Triantafyllou C, Whitfield-Gabrieli S, Gabrieli JD. Brain bases of reading fluency in typical reading and impaired fluency in dyslexia. PLoS One. 2014; 9(7):e100552. PMID: 25058010; PMCID: PMC4109933.
  22. Stoeckel LE, Garrison KA, Ghosh S, Wighton P, Hanlon CA, Gilman JM, Greer S, Turk-Browne NB, deBettencourt MT, Scheinost D, Craddock C, Thompson T, Calderon V, Bauer CC, George M, Breiter HC, Whitfield-Gabrieli S, Gabrieli JD, LaConte SM, Hirshberg L, Brewer JA, Hampson M, Van Der Kouwe A, Mackey S, Evins AE. Optimizing real time fMRI neurofeedback for therapeutic discovery and development. Neuroimage Clin. 2014; 5:245-55. PMID: 25161891; PMCID: PMC4141981.
  23. Cai S, Tourville JA, Beal DS, Perkell JS, Guenther FH, Ghosh SS. Diffusion imaging of cerebral white matter in persons who stutter: evidence for network-level anomalies. Front Hum Neurosci. 2014; 8:54. PMID: 24611042; PMCID: PMC3920071.
  24. Cai S, Beal DS, Ghosh SS, Guenther FH, Perkell JS. Impaired timing adjustments in response to time-varying auditory perturbation during connected speech production in persons who stutter. Brain Lang. 2014 Feb; 129:24-9. PMID: 24486601; PMCID: PMC3947674.
  25. Tustison NJ, Johnson HJ, Rohlfing T, Klein A, Ghosh SS, Ibanez L, Avants BB. Instrumentation bias in the use and evaluation of scientific software: recommendations for reproducible practices in the computational sciences. Front Neurosci. 2013; 7:162. PMID: 24058331; PMCID: PMC3766821.
  26. Perrachione TK, Ghosh SS. Optimized design and analysis of sparse-sampling FMRI experiments. Front Neurosci. 2013; 7:55. PMID: 23616742; PMCID: PMC3629333.
  27. Doehrmann O, Ghosh SS, Polli FE, Reynolds GO, Horn F, Keshavan A, Triantafyllou C, Saygin ZM, Whitfield-Gabrieli S, Hofmann SG, Pollack M, Gabrieli JD. Predicting treatment response in social anxiety disorder from functional magnetic resonance imaging. JAMA Psychiatry. 2013 Jan; 70(1):87-97. PMID: 22945462; PMCID: PMC3844518.
  28. Hinds O, Thompson TW, Ghosh S, Yoo JJ, Whitfield-Gabrieli S, Triantafyllou C, Gabrieli JD. Roles of default-mode network and supplementary motor area in human vigilance performance: evidence from real-time fMRI. J Neurophysiol. 2013 Mar; 109(5):1250-8. PMID: 23236006.
    View in: PubMed
  29. Cai S, Beal DS, Ghosh SS, Tiede MK, Guenther FH, Perkell JS. Weak responses to auditory feedback perturbation during articulation in persons who stutter: evidence for abnormal auditory-motor transformation. PLoS One. 2012; 7(7):e41830. PMID: 22911857; PMCID: PMC3402433.
  30. Ghosh SS, Klein A, Avants B, Millman KJ. Learning from open source software projects to improve scientific review. Front Comput Neurosci. 2012; 6:18. PMID: 22529798; PMCID: PMC3328792.
  31. Poline JB, Breeze JL, Ghosh S, Gorgolewski K, Halchenko YO, Hanke M, Haselgrove C, Helmer KG, Keator DB, Marcus DS, Poldrack RA, Schwartz Y, Ashburner J, Kennedy DN. Data sharing in neuroimaging research. Front Neuroinform. 2012; 6:9. PMID: 22493576; PMCID: PMC3319918.
  32. Cai S, Ghosh SS, Guenther FH, Perkell JS. Focal manipulations of formant trajectories reveal a role of auditory feedback in the online control of both within-syllable and between-syllable speech timing. J Neurosci. 2011 Nov 09; 31(45):16483-90. PMID: 22072698; PMCID: PMC3268045.
  33. Gorgolewski K, Burns CD, Madison C, Clark D, Halchenko YO, Waskom ML, Ghosh SS. Nipype: a flexible, lightweight and extensible neuroimaging data processing framework in python. Front Neuroinform. 2011; 5:13. PMID: 21897815; PMCID: PMC3159964.
  34. Silver AL, Nimkin K, Ashland JE, Ghosh SS, van der Kouwe AJ, Brigger MT, Hartnick CJ. Cine magnetic resonance imaging with simultaneous audio to evaluate pediatric velopharyngeal insufficiency. Arch Otolaryngol Head Neck Surg. 2011 Mar; 137(3):258-63. PMID: 21422310.
    View in: PubMed
  35. Golfinopoulos E, Tourville JA, Bohland JW, Ghosh SS, Nieto-Castanon A, Guenther FH. fMRI investigation of unexpected somatosensory feedback perturbation during speech. Neuroimage. 2011 Apr 01; 55(3):1324-38. PMID: 21195191; PMCID: PMC3065208.
  36. Ghosh SS, Matthies ML, Maas E, Hanson A, Tiede M, Ménard L, Guenther FH, Lane H, Perkell JS. An investigation of the relation between sibilant production and somatosensory and auditory acuity. J Acoust Soc Am. 2010 Nov; 128(5):3079-87. PMID: 21110603; PMCID: PMC3003728.
  37. Brunner J, Ghosh S, Hoole P, Matthies M, Tiede M, Perkell J. The influence of auditory acuity on acoustic variability and the use of motor equivalence during adaptation to a perturbation. J Speech Lang Hear Res. 2011 Jun; 54(3):727-39. PMID: 20966388.
    View in: PubMed
  38. Cai S, Ghosh SS, Guenther FH, Perkell JS. Adaptive auditory feedback control of the production of formant trajectories in the Mandarin triphthong /iau/ and its pattern of generalization. J Acoust Soc Am. 2010 Oct; 128(4):2033-48. PMID: 20968374; PMCID: PMC2981117.
  39. Hinds O, Ghosh S, Thompson TW, Yoo JJ, Whitfield-Gabrieli S, Triantafyllou C, Gabrieli JD. Computing moment-to-moment BOLD activation for real-time neurofeedback. Neuroimage. 2011 Jan 01; 54(1):361-8. PMID: 20682350; PMCID: PMC3731777.
  40. Ghosh SS, Kakunoori S, Augustinack J, Nieto-Castanon A, Kovelman I, Gaab N, Christodoulou JA, Triantafyllou C, Gabrieli JD, Fischl B. Evaluating the validity of volume-based and surface-based brain image registration for developmental cognitive neuroscience studies in children 4 to 11 years of age. Neuroimage. 2010 Oct 15; 53(1):85-93. PMID: 20621657; PMCID: PMC2914629.
  41. Klein A, Ghosh SS, Avants B, Yeo BT, Fischl B, Ardekani B, Gee JC, Mann JJ, Parsey RV. Evaluation of volume-based and surface-based brain image registration methods. Neuroimage. 2010 May 15; 51(1):214-20. PMID: 20123029; PMCID: PMC2862732.
  42. Balci SK, Sabuncu MR, Yoo J, Ghosh SS, Whitfield-Gabrieli S, Gabrieli JD, Golland P. Prediction of Successful Memory Encoding from fMRI Data. Med Image Comput Comput Assist Interv. 2008 Sep 01; 2008(11):97-104. PMID: 20401334.
    View in: PubMed
  43. Ghosh SS, Tourville JA, Guenther FH. A neuroimaging study of premotor lateralization and cerebellar involvement in the production of phonemes and syllables. J Speech Lang Hear Res. 2008 Oct; 51(5):1183-202. PMID: 18664692; PMCID: PMC2652040.
  44. Klein A, Mensh B, Ghosh S, Tourville J, Hirsch J. Mindboggle: automated brain labeling with multiple atlases. BMC Med Imaging. 2005 Oct 05; 5:7. PMID: 16202176; PMCID: PMC1283974.
  45. Guenther FH, Ghosh SS, Tourville JA. Neural modeling and imaging of the cortical interactions underlying syllable production. Brain Lang. 2006 Mar; 96(3):280-301. PMID: 16040108; PMCID: PMC1473986.
  46. Guenther FH, Nieto-Castanon A, Ghosh SS, Tourville JA. Representation of sound categories in auditory cortical maps. J Speech Lang Hear Res. 2004 Feb; 47(1):46-57. PMID: 15072527.
    View in: PubMed
  47. Nieto-Castanon A, Ghosh SS, Tourville JA, Guenther FH. Region of interest based analysis of functional imaging data. Neuroimage. 2003 Aug; 19(4):1303-16. PMID: 12948689.
    View in: PubMed
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