Harvard Catalyst Profiles

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Vikram Pattanayak, M.D., Ph.D.

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Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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  1. Turbett SE, Anahtar MN, Pattanayak V, Azar MM, Coffey KC, Eng G, Rudolf JW, Lewandrowski KB, Baron J, Rosenberg ES, Branda JA. Use of Routine Complete Blood Count Results to Rule Out Anaplasmosis Without the Need for Specific Diagnostic Testing. Clin Infect Dis. 2020 Mar 03; 70(6):1215-1221. PMID: 31044232.
    Citations:    
  2. Kim Y, Wojciechowski D, Pattanayak V, Lee H, Asgari MM. Association between Human Leukocyte Antigen Type and Keratinocyte Carcinoma Risk in Renal Transplant Recipients. J Invest Dermatol. 2020 May; 140(5):995-1002. PMID: 31669059.
    Citations:    
  3. Petri K, Pattanayak V. SHERLOCK and DETECTR Open a New Frontier in Molecular Diagnostics. CRISPR J. 2018 06; 1:209-211. PMID: 31021254.
    Citations:    
  4. Lareau CA, Clement K, Hsu JY, Pattanayak V, Joung JK, Aryee MJ, Pinello L. Response to "Unexpected mutations after CRISPR-Cas9 editing in vivo". Nat Methods. 2018 04; 15(4):238-239. PMID: 29600992.
    Citations: 1     Fields:    
  5. Kleinstiver BP, Pattanayak V, Prew MS, Tsai SQ, Nguyen NT, Zheng Z, Joung JK. High-fidelity CRISPR-Cas9 nucleases with no detectable genome-wide off-target effects. Nature. 2016 Jan 28; 529(7587):490-5. PMID: 26735016.
    Citations: 318     Fields:    Translation:HumansCells
  6. Davis KM, Pattanayak V, Thompson DB, Zuris JA, Liu DR. Small molecule-triggered Cas9 protein with improved genome-editing specificity. Nat Chem Biol. 2015 May; 11(5):316-8. PMID: 25848930.
    Citations: 63     Fields:    Translation:HumansCells
  7. Guilinger JP, Pattanayak V, Reyon D, Tsai SQ, Sander JD, Joung JK, Liu DR. Broad specificity profiling of TALENs results in engineered nucleases with improved DNA-cleavage specificity. Nat Methods. 2014 Apr; 11(4):429-35. PMID: 24531420.
    Citations: 60     Fields:    Translation:HumansCells
  8. Pattanayak V, Guilinger JP, Liu DR. Determining the specificities of TALENs, Cas9, and other genome-editing enzymes. Methods Enzymol. 2014; 546:47-78. PMID: 25398335.
    Citations: 21     Fields:    Translation:HumansAnimalsCells
  9. Sander JD, Ramirez CL, Linder SJ, Pattanayak V, Shoresh N, Ku M, Foden JA, Reyon D, Bernstein BE, Liu DR, Joung JK. In silico abstraction of zinc finger nuclease cleavage profiles reveals an expanded landscape of off-target sites. Nucleic Acids Res. 2013 Oct; 41(19):e181. PMID: 23945932.
    Citations: 23     Fields:    Translation:HumansCells
  10. Pattanayak V, Lin S, Guilinger JP, Ma E, Doudna JA, Liu DR. High-throughput profiling of off-target DNA cleavage reveals RNA-programmed Cas9 nuclease specificity. Nat Biotechnol. 2013 Sep; 31(9):839-43. PMID: 23934178.
    Citations: 364     Fields:    Translation:HumansCells
  11. Pattanayak V, Ramirez CL, Joung JK, Liu DR. Revealing off-target cleavage specificities of zinc-finger nucleases by in vitro selection. Nat Methods. 2011 Aug 07; 8(9):765-70. PMID: 21822273.
    Citations: 168     Fields:    Translation:HumansCells
  12. Pattanayak V, Gifford LK, Lu P, Gewirtz AM. Observed versus predicted structure of fluorescent self-quenching reporter molecules (SQRM): caveats with respect to the use of "stem-loop" oligonucleotides as probes for mRNA folding. RNA. 2008 Apr; 14(4):657-65. PMID: 18359781.
    Citations: 2     Fields:    Translation:Cells
  13. Doyon JB, Pattanayak V, Meyer CB, Liu DR. Directed evolution and substrate specificity profile of homing endonuclease I-SceI. J Am Chem Soc. 2006 Feb 22; 128(7):2477-84. PMID: 16478204.
    Citations: 48     Fields:    
  14. Gifford LK, Jordan D, Pattanayak V, Vernovsky K, Do BT, Gewirtz AM, Lu P. Stemless self-quenching reporter molecules identify target sequences in mRNA. Anal Biochem. 2005 Dec 01; 347(1):77-88. PMID: 16246289.
    Citations: 1     Fields:    Translation:AnimalsCells
  15. Gifford LK, Opalinska JB, Jordan D, Pattanayak V, Greenham P, Kalota A, Robbins M, Vernovsky K, Rodriguez LC, Do BT, Lu P, Gewirtz AM. Identification of antisense nucleic acid hybridization sites in mRNA molecules with self-quenching fluorescent reporter molecules. Nucleic Acids Res. 2005 Feb 17; 33(3):e28. PMID: 15718294.
    Citations: 5     Fields:    Translation:HumansAnimalsCells
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Funded by the NIH National Center for Advancing Translational Sciences through its Clinical and Translational Science Awards Program, grant number UL1TR002541.