Harvard Catalyst Profiles

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Vikram Pattanayak, M.D., Ph.D.


Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
  1. Dzik WS, Pattanayak V. Pluribus ex uno: Allo-sensitization to an HLA "public epitope". Transfusion. 2022 08; 62(8):1481-1482. PMID: 35638729.
    Citations:    Fields:    
  2. Al Jurdi A, Gassen RB, Borges TJ, Lape IT, Morena L, Efe O, Solhjou Z, El Fekih R, Deban C, Bohan B, Pattanayak V, Kotton CN, Azzi JR, Riella LV. Suboptimal antibody response against SARS-CoV-2 Omicron variant after third dose of mRNA vaccine in kidney transplant recipients. Kidney Int. 2022 06; 101(6):1282-1286. PMID: 35429496; PMCID: PMC9006415.
    Citations:    Fields:    Translation:HumansCells
  3. Konstantinidis E, Molisak A, Perrin F, Streubel-Gallasch L, Fayad S, Kim DY, Petri K, Aryee MJ, Aguilar X, György B, Giedraitis V, Joung JK, Pattanayak V, Essand M, Erlandsson A, Berezovska O, Ingelsson M. CRISPR-Cas9 treatment partially restores amyloid-ß 42/40 in human fibroblasts with the Alzheimer's disease PSEN1 M146L mutation. Mol Ther Nucleic Acids. 2022 Jun 14; 28:450-461. PMID: 35505961; PMCID: PMC9043867.
  4. Al Jurdi A, Gassen RB, Borges TJ, Solhjou Z, Hullekes FE, Lape IT, Efe O, Alghamdi A, Patel P, Choi JY, Mohammed MT, Bohan B, Pattanayak V, Rosales I, Cravedi P, Kotton CN, Azzi JR, Riella LV. Non-Invasive Monitoring for Rejection in Kidney Transplant Recipients After SARS-CoV-2 mRNA Vaccination. Front Immunol. 2022; 13:838985. PMID: 35281011; PMCID: PMC8913529.
    Citations: 1     Fields:    Translation:HumansCellsPHPublic Health
  5. Brunker PAR, Pattanayak V, Mahowald GK. Finding platelets: Don't let the perfect be the enemy of the good. Transfusion. 2021 08; 61(8):2223-2228. PMID: 34365668.
    Citations:    Fields:    Translation:HumansCells
  6. Garrood WT, Kranjc N, Petri K, Kim DY, Guo JA, Hammond AM, Morianou I, Pattanayak V, Joung JK, Crisanti A, Simoni A. Analysis of off-target effects in CRISPR-based gene drives in the human malaria mosquito. Proc Natl Acad Sci U S A. 2021 06 01; 118(22). PMID: 34050017.
    Citations: 8     Fields:    Translation:HumansAnimalsPHPublic Health
  7. Annas GJ, Beisel CL, Clement K, Crisanti A, Francis S, Galardini M, Galizi R, Grünewald J, Immobile G, Khalil AS, Müller R, Pattanayak V, Petri K, Paul L, Pinello L, Simoni A, Taxiarchi C, Joung JK. A Code of Ethics for Gene Drive Research. CRISPR J. 2021 02; 4(1):19-24. PMID: 33571044.
    Citations: 5     Fields:    Translation:HumansAnimalsPHPublic Health
  8. Turbett SE, Anahtar MN, Pattanayak V, Azar MM, Coffey KC, Eng G, Rudolf JW, Lewandrowski KB, Baron J, Rosenberg ES, Branda JA. Use of Routine Complete Blood Count Results to Rule Out Anaplasmosis Without the Need for Specific Diagnostic Testing. Clin Infect Dis. 2020 03 03; 70(6):1215-1221. PMID: 31044232.
    Citations: 1     Fields:    Translation:HumansAnimalsCells
  9. Kim Y, Wojciechowski D, Pattanayak V, Lee H, Asgari MM. Association between Human Leukocyte Antigen Type and Keratinocyte Carcinoma Risk in Renal Transplant Recipients. J Invest Dermatol. 2020 05; 140(5):995-1002. PMID: 31669059.
    Citations: 1     Fields:    Translation:HumansCells
  10. Petri K, Pattanayak V. SHERLOCK and DETECTR Open a New Frontier in Molecular Diagnostics. CRISPR J. 2018 06; 1:209-211. PMID: 31021254.
    Citations: 4     Fields:    
  11. Lareau CA, Clement K, Hsu JY, Pattanayak V, Joung JK, Aryee MJ, Pinello L. Response to "Unexpected mutations after CRISPR-Cas9 editing in vivo". Nat Methods. 2018 04; 15(4):238-239. PMID: 29600992.
    Citations: 14     Fields:    Translation:Cells
  12. Kleinstiver BP, Pattanayak V, Prew MS, Tsai SQ, Nguyen NT, Zheng Z, Joung JK. High-fidelity CRISPR-Cas9 nucleases with no detectable genome-wide off-target effects. Nature. 2016 Jan 28; 529(7587):490-5. PMID: 26735016.
    Citations: 935     Fields:    Translation:HumansCells
  13. Davis KM, Pattanayak V, Thompson DB, Zuris JA, Liu DR. Small molecule-triggered Cas9 protein with improved genome-editing specificity. Nat Chem Biol. 2015 May; 11(5):316-8. PMID: 25848930; PMCID: PMC4402137.
    Citations: 148     Fields:    Translation:HumansCells
  14. Guilinger JP, Pattanayak V, Reyon D, Tsai SQ, Sander JD, Joung JK, Liu DR. Broad specificity profiling of TALENs results in engineered nucleases with improved DNA-cleavage specificity. Nat Methods. 2014 Apr; 11(4):429-35. PMID: 24531420; PMCID: PMC4010127.
    Citations: 91     Fields:    Translation:HumansCells
  15. Pattanayak V, Guilinger JP, Liu DR. Determining the specificities of TALENs, Cas9, and other genome-editing enzymes. Methods Enzymol. 2014; 546:47-78. PMID: 25398335; PMCID: PMC4440668.
    Citations: 30     Fields:    Translation:HumansAnimalsCells
  16. Sander JD, Ramirez CL, Linder SJ, Pattanayak V, Shoresh N, Ku M, Foden JA, Reyon D, Bernstein BE, Liu DR, Joung JK. In silico abstraction of zinc finger nuclease cleavage profiles reveals an expanded landscape of off-target sites. Nucleic Acids Res. 2013 Oct; 41(19):e181. PMID: 23945932.
    Citations: 29     Fields:    Translation:HumansCells
  17. Pattanayak V, Lin S, Guilinger JP, Ma E, Doudna JA, Liu DR. High-throughput profiling of off-target DNA cleavage reveals RNA-programmed Cas9 nuclease specificity. Nat Biotechnol. 2013 Sep; 31(9):839-43. PMID: 23934178.
    Citations: 636     Fields:    Translation:HumansCells
  18. Pattanayak V, Ramirez CL, Joung JK, Liu DR. Revealing off-target cleavage specificities of zinc-finger nucleases by in vitro selection. Nat Methods. 2011 Aug 07; 8(9):765-70. PMID: 21822273; PMCID: PMC3164905.
    Citations: 213     Fields:    Translation:HumansCells
  19. Pattanayak V, Gifford LK, Lu P, Gewirtz AM. Observed versus predicted structure of fluorescent self-quenching reporter molecules (SQRM): caveats with respect to the use of "stem-loop" oligonucleotides as probes for mRNA folding. RNA. 2008 Apr; 14(4):657-65. PMID: 18359781.
    Citations: 2     Fields:    Translation:Cells
  20. Doyon JB, Pattanayak V, Meyer CB, Liu DR. Directed evolution and substrate specificity profile of homing endonuclease I-SceI. J Am Chem Soc. 2006 Feb 22; 128(7):2477-84. PMID: 16478204.
    Citations: 57     Fields:    
  21. Gifford LK, Jordan D, Pattanayak V, Vernovsky K, Do BT, Gewirtz AM, Lu P. Stemless self-quenching reporter molecules identify target sequences in mRNA. Anal Biochem. 2005 Dec 01; 347(1):77-88. PMID: 16246289.
    Citations: 1     Fields:    Translation:AnimalsCells
  22. Gifford LK, Opalinska JB, Jordan D, Pattanayak V, Greenham P, Kalota A, Robbins M, Vernovsky K, Rodriguez LC, Do BT, Lu P, Gewirtz AM. Identification of antisense nucleic acid hybridization sites in mRNA molecules with self-quenching fluorescent reporter molecules. Nucleic Acids Res. 2005 Feb 17; 33(3):e28. PMID: 15718294; PMCID: PMC549423.
    Citations: 7     Fields:    Translation:HumansAnimalsCells
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Funded by the NIH National Center for Advancing Translational Sciences through its Clinical and Translational Science Awards Program, grant number UL1TR002541.