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Andrew Beam, Ph.D.

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The research activities and funding listed below are automatically derived from NIH ExPORTER and other sources, which might result in incorrect or missing items. Faculty can login to make corrections and additions.
  1. K01HL141771 (BEAM, ANDREW L.) Jul 1, 2019 - Jun 30, 2024
    NIH
    Predicting Pulmonary and Cardiac Morbidity in Preterm Infants with Deep Learning
    Role: Principal Investigator

Bibliographic
Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
  1. Beam AL, Manrai AK, Ghassemi M. Challenges to the Reproducibility of Machine Learning Models in Health Care. JAMA. 2020 Jan 06. PMID: 31904799.
    Citations:    
  2. Beam AL, Kompa B, Schmaltz A, Fried I, Weber G, Palmer N, Shi X, Cai T, Kohane IS. Clinical Concept Embeddings Learned from Massive Sources of Multimodal Medical Data. Pac Symp Biocomput. 2020; 25:295-306. PMID: 31797605.
    Citations:    
  3. Zhang L, Zhang Y, Cai T, Ahuja Y, He Z, Ho YL, Beam A, Cho K, Carroll R, Denny J, Kohane I, Liao K, Cai T. Automated grouping of medical codes via multiview banded spectral clustering. J Biomed Inform. 2019 Dec; 100:103322. PMID: 31672532.
    Citations:    
  4. Palmer NP, Silvester JA, Lee JJ, Beam AL, Fried I, Valtchinov VI, Rahimov F, Kong SW, Ghodoussipour S, Hood HC, Bousvaros A, Grand RJ, Kunkel LM, Kohane IS. Concordance between gene expression in peripheral whole blood and colonic tissue in children with inflammatory bowel disease. PLoS One. 2019; 14(10):e0222952. PMID: 31618209.
    Citations:    
  5. Beaulieu-Jones B, Finlayson SG, Chivers C, Chen I, McDermott M, Kandola J, Dalca AV, Beam A, Fiterau M, Naumann T. Trends and Focus of Machine Learning Applications for Health Research. JAMA Netw Open. 2019 Oct 02; 2(10):e1914051. PMID: 31651969.
    Citations:    
  6. Kartoun U, Iglay K, Shankar RR, Beam A, Radican L, Chatterjee A, Pai JK, Shaw S. Factors associated with clinical inertia in type 2 diabetes mellitus patients treated with metformin monotherapy. Curr Med Res Opin. 2019 Dec; 35(12):2063-2070. PMID: 31337263.
    Citations:    
  7. Chen ML, Doddi A, Royer J, Freschi L, Schito M, Ezewudo M, Kohane IS, Beam A, Farhat M. Beyond multidrug resistance: Leveraging rare variants with machine and statistical learning models in Mycobacterium tuberculosis resistance prediction. EBioMedicine. 2019 May; 43:356-369. PMID: 31047860.
    Citations:    
  8. Finlayson SG, Bowers JD, Ito J, Zittrain JL, Beam AL, Kohane IS. Adversarial attacks on medical machine learning. Science. 2019 03 22; 363(6433):1287-1289. PMID: 30898923.
    Citations:    
  9. Ning W, Chan S, Beam A, Yu M, Geva A, Liao K, Mullen M, Mandl KD, Kohane I, Cai T, Yu S. Feature extraction for phenotyping from semantic and knowledge resources. J Biomed Inform. 2019 03; 91:103122. PMID: 30738949.
    Citations:    
  10. Beaulieu-Jones BK, Kohane IS, Beam AL. Learning Contextual Hierarchical Structure of Medical Concepts with Poincairé Embeddings to Clarify Phenotypes. Pac Symp Biocomput. 2019; 24:8-17. PMID: 30864306.
    Citations:    
  11. Yu KH, Beam AL, Kohane IS. Artificial intelligence in healthcare. Nat Biomed Eng. 2018 10; 2(10):719-731. PMID: 31015651.
    Citations:    
  12. Oakden-Rayner L, Beam AL, Palmer LJ. Medical journals should embrace preprints to address the reproducibility crisis. Int J Epidemiol. 2018 10 01; 47(5):1363-1365. PMID: 29868762.
    Citations:    Fields:    
  13. Kartoun U, Aggarwal R, Beam AL, Pai JK, Chatterjee AK, Fitzgerald TP, Kohane IS, Shaw SY. Development of an Algorithm to Identify Patients with Physician-Documented Insomnia. Sci Rep. 2018 05 18; 8(1):7862. PMID: 29777125.
    Citations:    Fields:    
  14. Beam AL, Kohane IS. Big Data and Machine Learning in Health Care. JAMA. 2018 Apr 03; 319(13):1317-1318. PMID: 29532063.
    Citations: 7     Fields:    Translation:Humans
  15. Brat GA, Agniel D, Beam A, Yorkgitis B, Bicket M, Homer M, Fox KP, Knecht DB, McMahill-Walraven CN, Palmer N, Kohane I. Postsurgical prescriptions for opioid naive patients and association with overdose and misuse: retrospective cohort study. BMJ. 2018 01 17; 360:j5790. PMID: 29343479.
    Citations: 6     Fields:    Translation:Humans
  16. Fried I, Beam AL, Kohane IS, Palmer NP. Utilization, Cost, and Outcome of Branded vs Compounded 17-Alpha Hydroxyprogesterone Caproate in Prevention of Preterm Birth. JAMA Intern Med. 2017 11 01; 177(11):1689-1690. PMID: 28973537.
    Citations:    Fields:    Translation:Humans
  17. Palmer N, Beam A, Agniel D, Eran A, Manrai A, Spettell C, Steinberg G, Mandl K, Fox K, Nelson SF, Kohane I. Association of Sex With Recurrence of Autism Spectrum Disorder Among Siblings. JAMA Pediatr. 2017 11 01; 171(11):1107-1112. PMID: 28973142.
    Citations: 2     Fields:    Translation:Humans
  18. Miron O, Beam AL, Kohane IS. Auditory brainstem response in infants and children with autism spectrum disorder: A meta-analysis of wave V. Autism Res. 2018 02; 11(2):355-363. PMID: 29087045.
    Citations: 2     Fields:    
  19. Nitzschke S, Offodile AC, Cauley RP, Frankel JE, Beam A, Elias KM, Gibbons FK, Salim A, Christopher KB. Long term mortality in critically ill burn survivors. Burns. 2017 Sep; 43(6):1155-1162. PMID: 28606748.
    Citations:    Fields:    Translation:Humans
  20. Beam AL, Kartoun U, Pai JK, Chatterjee AK, Fitzgerald TP, Shaw SY, Kohane IS. Predictive Modeling of Physician-Patient Dynamics That Influence Sleep Medication Prescriptions and Clinical Decision-Making. Sci Rep. 2017 02 09; 7:42282. PMID: 28181568.
    Citations: 3     Fields:    Translation:Humans
  21. Beam AL, Kohane IS. Translating Artificial Intelligence Into Clinical Care. JAMA. 2016 12 13; 316(22):2368-2369. PMID: 27898974.
    Citations: 5     Fields:    Translation:Humans
  22. Beam AL, Motsinger-Reif AA, Doyle J. An investigation of gene-gene interactions in dose-response studies with Bayesian nonparametrics. BioData Min. 2015; 8:6. PMID: 25691918.
    Citations:    
  23. Beam AL, Motsinger-Reif A, Doyle J. Bayesian neural networks for detecting epistasis in genetic association studies. BMC Bioinformatics. 2014 Nov 21; 15:368. PMID: 25413600.
    Citations: 5     Fields:    Translation:HumansCells
  24. Beam A, Motsinger-Reif A. Beyond IC50s: Towards Robust Statistical Methods for in vitro Association Studies. J Pharmacogenomics Pharmacoproteomics. 2014 Mar 01; 5(1):1000121. PMID: 25110614.
    Citations: 8     
  25. Padilla S, Corum D, Padnos B, Hunter DL, Beam A, Houck KA, Sipes N, Kleinstreuer N, Knudsen T, Dix DJ, Reif DM. Zebrafish developmental screening of the ToxCast™ Phase I chemical library. Reprod Toxicol. 2012 Apr; 33(2):174-87. PMID: 22182468.
    Citations: 61     Fields:    Translation:Animals
  26. Motsinger-Reif A, Brown C, Havener T, Hardison N, Peters E, Beam A, Everrit L, McLeod H. Ex-Vivo Modeling for Heritability Assessment and Genetic Mapping in Pharmacogenomics. Proc Am Stat Assoc. 2011 Jul-Aug; 2011:306-318. PMID: 30627054.
    Citations:    
  27. Beam AL, Motsinger-Reif AA. Optimization of nonlinear dose- and concentration-response models utilizing evolutionary computation. Dose Response. 2011; 9(3):387-409. PMID: 22013401.
    Citations: 4     
  28. Rotroff DM, Beam AL, Dix DJ, Farmer A, Freeman KM, Houck KA, Judson RS, LeCluyse EL, Martin MT, Reif DM, Ferguson SS. Xenobiotic-metabolizing enzyme and transporter gene expression in primary cultures of human hepatocytes modulated by ToxCast chemicals. J Toxicol Environ Health B Crit Rev. 2010 Feb; 13(2-4):329-46. PMID: 20574906.
    Citations: 14     Fields:    Translation:HumansAnimalsCells
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Funded by the NIH National Center for Advancing Translational Sciences through its Clinical and Translational Science Awards Program, grant number UL1TR002541.