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Pier Francesco Palamara

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Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
  1. Siejka-Zielinska P, Cheng J, Jackson F, Liu Y, Soonawalla Z, Reddy S, Silva M, Puta L, McCain MV, Culver EL, Bekkali N, Schuster-Böckler B, Palamara PF, Mann D, Reeves H, Barnes E, Sivakumar S, Song CX. Cell-free DNA TAPS provides multimodal information for early cancer detection. Sci Adv. 2021 Sep 03; 7(36):eabh0534. PMID: 34516908; PMCID: PMC8442905.
    Citations: 8     Fields:    
  2. Nait Saada J, Kalantzis G, Shyr D, Cooper F, Robinson M, Gusev A, Palamara PF. Identity-by-descent detection across 487,409 British samples reveals fine scale population structure and ultra-rare variant associations. Nat Commun. 2020 11 30; 11(1):6130. PMID: 33257650; PMCID: PMC7704644.
    Citations: 19     Fields:    Translation:Humans
  3. Yasumizu Y, Sakaue S, Konuma T, Suzuki K, Matsuda K, Murakami Y, Kubo M, Palamara PF, Kamatani Y, Okada Y. Genome-Wide Natural Selection Signatures Are Linked to Genetic Risk of Modern Phenotypes in the Japanese Population. Mol Biol Evol. 2020 05 01; 37(5):1306-1316. PMID: 31957793; PMCID: PMC7182208.
    Citations: 7     Fields:    Translation:Humans
  4. Gazal S, Finucane HK, Furlotte NA, Loh PR, Palamara PF, Liu X, Schoech A, Bulik-Sullivan B, Neale BM, Gusev A, Price AL. Author Correction: Linkage disequilibrium-dependent architecture of human complex traits shows action of negative selection. Nat Genet. 2019 Aug; 51(8):1295. PMID: 31273336.
    Citations:    Fields:    
  5. Schoech AP, Jordan DM, Loh PR, Gazal S, O'Connor LJ, Balick DJ, Palamara PF, Finucane HK, Sunyaev SR, Price AL. Quantification of frequency-dependent genetic architectures in 25 UK Biobank traits reveals action of negative selection. Nat Commun. 2019 02 15; 10(1):790. PMID: 30770844.
    Citations: 40     Fields:    Translation:Humans
  6. Reshef YA, Finucane HK, Kelley DR, Gusev A, Kotliar D, Ulirsch JC, Hormozdiari F, Nasser J, O'Connor L, van de Geijn B, Loh PR, Grossman SR, Bhatia G, Gazal S, Palamara PF, Pinello L, Patterson N, Adams RP, Price AL. Detecting genome-wide directional effects of transcription factor binding on polygenic disease risk. Nat Genet. 2018 10; 50(10):1483-1493. PMID: 30177862; PMCID: PMC6202062.
    Citations: 24     Fields:    Translation:HumansCells
  7. Palamara PF, Terhorst J, Song YS, Price AL. High-throughput inference of pairwise coalescence times identifies signals of selection and enriched disease heritability. Nat Genet. 2018 09; 50(9):1311-1317. PMID: 30104759.
    Citations: 22     Fields:    Translation:Humans
  8. Loh PR, Genovese G, Handsaker RE, Finucane HK, Reshef YA, Palamara PF, Birmann BM, Talkowski ME, Bakhoum SF, McCarroll SA, Price AL. Insights into clonal haematopoiesis from 8,342 mosaic chromosomal alterations. Nature. 2018 07; 559(7714):350-355. PMID: 29995854.
    Citations: 113     Fields:    Translation:HumansCells
  9. Gazal S, Finucane HK, Furlotte NA, Loh PR, Palamara PF, Liu X, Schoech A, Bulik-Sullivan B, Neale BM, Gusev A, Price AL. Linkage disequilibrium-dependent architecture of human complex traits shows action of negative selection. Nat Genet. 2017 Oct; 49(10):1421-1427. PMID: 28892061; PMCID: PMC6133304.
    Citations: 153     Fields:    Translation:Humans
  10. Loh PR, Danecek P, Palamara PF, Fuchsberger C, A Reshef Y, K Finucane H, Schoenherr S, Forer L, McCarthy S, Abecasis GR, Durbin R, L Price A. Reference-based phasing using the Haplotype Reference Consortium panel. Nat Genet. 2016 11; 48(11):1443-1448. PMID: 27694958; PMCID: PMC5096458.
    Citations: 614     Fields:    Translation:Humans
  11. Palamara PF. ARGON: fast, whole-genome simulation of the discrete time Wright-fisher process. Bioinformatics. 2016 10 01; 32(19):3032-4. PMID: 27312410.
    Citations: 11     Fields:    Translation:HumansAnimals
  12. Loh PR, Palamara PF, Price AL. Fast and accurate long-range phasing in a UK Biobank cohort. Nat Genet. 2016 07; 48(7):811-6. PMID: 27270109; PMCID: PMC4925291.
    Citations: 143     Fields:    Translation:Humans
  13. Palamara PF, Francioli LC, Wilton PR, Genovese G, Gusev A, Finucane HK, Sankararaman S, Sunyaev SR, de Bakker PI, Wakeley J, Pe'er I, Price AL. Leveraging Distant Relatedness to Quantify Human Mutation and Gene-Conversion Rates. Am J Hum Genet. 2015 Dec 03; 97(6):775-89. PMID: 26581902; PMCID: PMC4678427.
    Citations: 35     Fields:    Translation:Humans
  14. Palamara PF, Pe'er I. Inference of historical migration rates via haplotype sharing. Bioinformatics. 2013 Jul 01; 29(13):i180-8. PMID: 23812983.
    Citations: 28     Fields:    Translation:Humans
  15. Carmi S, Palamara PF, Vacic V, Lencz T, Darvasi A, Pe'er I. The variance of identity-by-descent sharing in the Wright-Fisher model. Genetics. 2013 Mar; 193(3):911-28. PMID: 23267057.
    Citations: 20     Fields:    Translation:Humans
  16. Palamara PF, Lencz T, Darvasi A, Pe'er I. Length distributions of identity by descent reveal fine-scale demographic history. Am J Hum Genet. 2012 Nov 02; 91(5):809-22. PMID: 23103233; PMCID: PMC3487132.
    Citations: 107     Fields:    Translation:Humans
  17. Campbell CL, Palamara PF, Dubrovsky M, Botigué LR, Fellous M, Atzmon G, Oddoux C, Pearlman A, Hao L, Henn BM, Burns E, Bustamante CD, Comas D, Friedman E, Pe'er I, Ostrer H. North African Jewish and non-Jewish populations form distinctive, orthogonal clusters. Proc Natl Acad Sci U S A. 2012 Aug 21; 109(34):13865-70. PMID: 22869716; PMCID: PMC3427049.
    Citations: 28     Fields:    Translation:Humans
  18. Gusev A, Palamara PF, Aponte G, Zhuang Z, Darvasi A, Gregersen P, Pe'er I. The architecture of long-range haplotypes shared within and across populations. Mol Biol Evol. 2012 Feb; 29(2):473-86. PMID: 21984068.
    Citations: 54     Fields:    Translation:Humans
  19. Parida L, Palamara PF, Javed A. A minimal descriptor of an ancestral recombinations graph. BMC Bioinformatics. 2011 Feb 15; 12 Suppl 1:S6. PMID: 21342589.
    Citations: 2     Fields:    
  20. Atzmon G, Hao L, Pe'er I, Velez C, Pearlman A, Palamara PF, Morrow B, Friedman E, Oddoux C, Burns E, Ostrer H. Abraham's children in the genome era: major Jewish diaspora populations comprise distinct genetic clusters with shared Middle Eastern Ancestry. Am J Hum Genet. 2010 Jun 11; 86(6):850-9. PMID: 20560205; PMCID: PMC3032072.
    Citations: 118     Fields:    Translation:Humans
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Funded by the NIH National Center for Advancing Translational Sciences through its Clinical and Translational Science Awards Program, grant number UL1TR002541.