Harvard Catalyst Profiles

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Tianrun Cai, M.D.



Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
  1. Cai T, He Z, Hong C, Zhang Y, Ho YL, Honerlaw J, Geva A, Ayakulangara Panickan V, King A, Gagnon DR, Gaziano M, Cho K, Liao K, Cai T. Scalable relevance ranking algorithm via semantic similarity assessment improves efficiency of medical chart review. J Biomed Inform. 2022 08; 132:104109. PMID: 35660521.
    Citations:    Fields:    
  2. Cai T, Cai F, Dahal KP, Cremone G, Lam E, Golnik C, Seyok T, Hong C, Cai T, Liao KP. Improving the Efficiency of Clinical Trial Recruitment Using an Ensemble Machine Learning to Assist With Eligibility Screening. ACR Open Rheumatol. 2021 Sep; 3(9):593-600. PMID: 34296815.
    Citations: 1     
  3. Yuan Q, Cai T, Hong C, Du M, Johnson BE, Lanuti M, Cai T, Christiani DC. Performance of a Machine Learning Algorithm Using Electronic Health Record Data to Identify and Estimate Survival in a Longitudinal Cohort of Patients With Lung Cancer. JAMA Netw Open. 2021 07 01; 4(7):e2114723. PMID: 34232304.
    Citations: 5     Fields:    Translation:Humans
  4. Tedeschi SK, Cai T, He Z, Ahuja Y, Hong C, Yates KA, Dahal K, Xu C, Lyu H, Yoshida K, Solomon DH, Cai T, Liao KP. Classifying Pseudogout Using Machine Learning Approaches With Electronic Health Record Data. Arthritis Care Res (Hoboken). 2021 03; 73(3):442-448. PMID: 31910317; PMCID: PMC7338229.
    Citations: 2     Fields:    Translation:Humans
  5. Ahuja Y, Kim N, Liang L, Cai T, Dahal K, Seyok T, Lin C, Finan S, Liao K, Savovoa G, Chitnis T, Cai T, Xia Z. Leveraging electronic health records data to predict multiple sclerosis disease activity. Ann Clin Transl Neurol. 2021 04; 8(4):800-810. PMID: 33626237.
    Citations: 4     Fields:    Translation:Humans
  6. Huang S, Huang J, Cai T, Dahal KP, Cagan A, He Z, Stratton J, Gorelik I, Hong C, Cai T, Liao KP. Impact of ICD10 and secular changes on electronic medical record rheumatoid arthritis algorithms. Rheumatology (Oxford). 2020 12 01; 59(12):3759-3766. PMID: 32413107; PMCID: PMC7733719.
    Citations: 5     Fields:    Translation:Humans
  7. Zhao SS, Hong C, Cai T, Xu C, Huang J, Ermann J, Goodson NJ, Solomon DH, Cai T, Liao KP. Incorporating natural language processing to improve classification of axial spondyloarthritis using electronic health records. Rheumatology (Oxford). 2020 05 01; 59(5):1059-1065. PMID: 31535693; PMCID: PMC7850056.
    Citations: 4     Fields:    Translation:Humans
  8. Zhang Y, Cai T, Yu S, Cho K, Hong C, Sun J, Huang J, Ho YL, Ananthakrishnan AN, Xia Z, Shaw SY, Gainer V, Castro V, Link N, Honerlaw J, Huang S, Gagnon D, Karlson EW, Plenge RM, Szolovits P, Savova G, Churchill S, O'Donnell C, Murphy SN, Gaziano JM, Kohane I, Cai T, Liao KP. High-throughput phenotyping with electronic medical record data using a common semi-supervised approach (PheCAP). Nat Protoc. 2019 12; 14(12):3426-3444. PMID: 31748751; PMCID: PMC7323894.
    Citations: 31     Fields:    Translation:Humans
  9. Cai T, Zhang L, Yang N, Kumamaru KK, Rybicki FJ, Cai T, Liao KP. EXTraction of EMR numerical data: an efficient and generalizable tool to EXTEND clinical research. BMC Med Inform Decis Mak. 2019 11 15; 19(1):226. PMID: 31730484; PMCID: PMC6858776.
    Citations: 3     Fields:    Translation:Humans
  10. Liao KP, Sun J, Cai TA, Link N, Hong C, Huang J, Huffman JE, Gronsbell J, Zhang Y, Ho YL, Castro V, Gainer V, Murphy SN, O'Donnell CJ, Gaziano JM, Cho K, Szolovits P, Kohane IS, Yu S, Cai T. High-throughput multimodal automated phenotyping (MAP) with application to PheWAS. J Am Med Inform Assoc. 2019 11 01; 26(11):1255-1262. PMID: 31613361.
    Citations: 19     Fields:    Translation:Humans
  11. Zhang L, Zhang Y, Cai T, Ahuja Y, He Z, Ho YL, Beam A, Cho K, Carroll R, Denny J, Kohane I, Liao K, Cai T. Automated grouping of medical codes via multiview banded spectral clustering. J Biomed Inform. 2019 12; 100:103322. PMID: 31672532.
    Citations: 3     Fields:    Translation:Humans
  12. Jorge A, Castro VM, Barnado A, Gainer V, Hong C, Cai T, Cai T, Carroll R, Denny JC, Crofford L, Costenbader KH, Liao KP, Karlson EW, Feldman CH. Identifying lupus patients in electronic health records: Development and validation of machine learning algorithms and application of rule-based algorithms. Semin Arthritis Rheum. 2019 08; 49(1):84-90. PMID: 30665626.
    Citations: 16     Fields:    Translation:Humans
  13. Zhong QY, Mittal LP, Nathan MD, Brown KM, Knudson González D, Cai T, Finan S, Gelaye B, Avillach P, Smoller JW, Karlson EW, Cai T, Williams MA. Use of natural language processing in electronic medical records to identify pregnant women with suicidal behavior: towards a solution to the complex classification problem. Eur J Epidemiol. 2019 Feb; 34(2):153-162. PMID: 30535584; PMCID: PMC6370493.
    Citations: 12     Fields:    Translation:Humans
  14. Cai T, Lin TC, Bond A, Huang J, Kane-Wanger G, Cagan A, Murphy SN, Ananthakrishnan AN, Liao KP. The Association Between Arthralgia and Vedolizumab Using Natural Language Processing. Inflamm Bowel Dis. 2018 09 15; 24(10):2242-2246. PMID: 29846617.
    Citations: 8     Fields:    Translation:Humans
  15. Cai T, Zhang Y, Ho YL, Link N, Sun J, Huang J, Cai TA, Damrauer S, Ahuja Y, Honerlaw J, Huang J, Costa L, Schubert P, Hong C, Gagnon D, Sun YV, Gaziano JM, Wilson P, Cho K, Tsao P, O'Donnell CJ, Liao KP. Association of Interleukin 6 Receptor Variant With Cardiovascular Disease Effects of Interleukin 6 Receptor Blocking Therapy: A Phenome-Wide Association Study. JAMA Cardiol. 2018 09 01; 3(9):849-857. PMID: 30090940.
    Citations: 33     Fields:    Translation:Humans
  16. Yu S, Ma Y, Gronsbell J, Cai T, Ananthakrishnan AN, Gainer VS, Churchill SE, Szolovits P, Murphy SN, Kohane IS, Liao KP, Cai T. Enabling phenotypic big data with PheNorm. J Am Med Inform Assoc. 2018 01 01; 25(1):54-60. PMID: 29126253.
    Citations: 33     Fields:    Translation:Humans
  17. Geva A, Gronsbell JL, Cai T, Cai T, Murphy SN, Lyons JC, Heinz MM, Natter MD, Patibandla N, Bickel J, Mullen MP, Mandl KD. A Computable Phenotype Improves Cohort Ascertainment in a Pediatric Pulmonary Hypertension Registry. J Pediatr. 2017 09; 188:224-231.e5. PMID: 28625502; PMCID: PMC5572538.
    Citations: 13     Fields:    Translation:Humans
  18. Yu S, Chakrabortty A, Liao KP, Cai T, Ananthakrishnan AN, Gainer VS, Churchill SE, Szolovits P, Murphy SN, Kohane IS, Cai T. Surrogate-assisted feature extraction for high-throughput phenotyping. J Am Med Inform Assoc. 2017 Apr 01; 24(e1):e143-e149. PMID: 27632993; PMCID: PMC6080726.
    Citations: 32     Fields:    Translation:Humans
  19. Kumamaru KK, Saboo SS, Aghayev A, Cai P, Quesada CG, George E, Hussain Z, Cai T, Rybicki FJ. CT pulmonary angiography-based scoring system to predict the prognosis of acute pulmonary embolism. J Cardiovasc Comput Tomogr. 2016 Nov - Dec; 10(6):473-479. PMID: 27591768.
    Citations: 15     Fields:    Translation:Humans
  20. Kumamaru KK, George E, Aghayev A, Saboo SS, Khandelwal A, Rodríguez-López S, Cai T, Jiménez-Carretero D, Estépar RS, Ledesma-Carbayo MJ, González G, Rybicki FJ. Implementation and Performance of Automated Software for Computing Right-to-Left Ventricular Diameter Ratio From Computed Tomography Pulmonary Angiography Images. J Comput Assist Tomogr. 2016 May-Jun; 40(3):387-92. PMID: 26938697.
    Citations: 2     Fields:    Translation:Humans
  21. Cai T, Giannopoulos AA, Yu S, Kelil T, Ripley B, Kumamaru KK, Rybicki FJ, Mitsouras D. Natural Language Processing Technologies in Radiology Research and Clinical Applications. Radiographics. 2016 Jan-Feb; 36(1):176-91. PMID: 26761536.
    Citations: 54     Fields:    Translation:Humans
  22. Cai T, Rybicki FJ, Giannopoulos AA, Schultz K, Kumamaru KK, Liacouras P, Demehri S, Shu Small KM, Mitsouras D. The residual STL volume as a metric to evaluate accuracy and reproducibility of anatomic models for 3D printing: application in the validation of 3D-printable models of maxillofacial bone from reduced radiation dose CT images. 3D Print Med. 2015; 1(1):2. PMID: 30050971; PMCID: PMC6036610.
    Citations: 8     
  23. Mitsouras D, Liacouras P, Imanzadeh A, Giannopoulos AA, Cai T, Kumamaru KK, George E, Wake N, Caterson EJ, Pomahac B, Ho VB, Grant GT, Rybicki FJ. Medical 3D Printing for the Radiologist. Radiographics. 2015 Nov-Dec; 35(7):1965-88. PMID: 26562233.
    Citations: 168     Fields:    Translation:Humans
  24. Bedayat A, Sewatkar R, Cai T, George E, Imanzadeh A, Hussain Z, Dunne RM, Hunsaker AR, Rybicki FJ, Kumamaru KK. Association Between Confidence Level of Acute Pulmonary Embolism Diagnosis on CTPA images and Clinical Outcomes. Acad Radiol. 2015 Dec; 22(12):1555-61. PMID: 26391859.
    Citations: 1     Fields:    Translation:Humans
  25. Chatzizisis YS, George E, Cai T, Fulwadhva UP, Kumamaru KK, Schultz K, Fujisawa Y, Rassi C, Steigner M, Mather RT, Blankstein R, Rybicki FJ, Mitsouras D. Accuracy and reproducibility of automated, standardized coronary transluminal attenuation gradient measurements. Int J Cardiovasc Imaging. 2014 Aug; 30(6):1181-9. PMID: 24839136.
    Citations: 7     Fields:    Translation:Humans
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Funded by the NIH National Center for Advancing Translational Sciences through its Clinical and Translational Science Awards Program, grant number UL1TR002541.