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Berkin Bilgic, Ph.D.

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  1. R01EB028797 (BILGIC, BERKIN) Feb 1, 2020 - Nov 30, 2023
    NIH/NIBIB
    Advanced Neuroimaging through Novel Encoding Strategies and Hardware Design
    Role: Principal Investigator

Bibliographic
Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
  1. Tian Q, Bilgic B, Fan Q, Liao C, Ngamsombat C, Hu Y, Witzel T, Setsompop K, Polimeni JR, Huang SY. DeepDTI: High-fidelity six-direction diffusion tensor imaging using deep learning. Neuroimage. 2020 Jun 03; 219:117017. PMID: 32504817.
    Citations:    
  2. Dong Z, Wang F, Reese TG, Bilgic B, Setsompop K. Echo planar time-resolved imaging with subspace reconstruction and optimized spatiotemporal encoding. Magn Reson Med. 2020 Apr 25. PMID: 32333478.
    Citations:    
  3. Polak D, Cauley S, Bilgic B, Gong E, Bachert P, Adalsteinsson E, Setsompop K. Joint multi-contrast variational network reconstruction (jVN) with application to rapid 2D and 3D imaging. Magn Reson Med. 2020 Sep; 84(3):1456-1469. PMID: 32129529.
    Citations:    
  4. Milovic C, Tejos C, Acosta-Cabronero J, Özbay PS, Schwesser F, Marques JP, Irarrazaval P, Bilgic B, Langkammer C. The 2016 QSM Challenge: Lessons learned and considerations for a future challenge design. Magn Reson Med. 2020 Sep; 84(3):1624-1637. PMID: 32086836.
    Citations:    
  5. Polak D, Chatnuntawech I, Yoon J, Iyer SS, Milovic C, Lee J, Bachert P, Adalsteinsson E, Setsompop K, Bilgic B. Nonlinear dipole inversion (NDI) enables robust quantitative susceptibility mapping (QSM). NMR Biomed. 2020 Feb 20; e4271. PMID: 32078756.
    Citations:    
  6. Han S, Liao C, Manhard MK, Park DJ, Bilgic B, Fair MJ, Wang F, Blazejewska AI, Grissom WA, Polimeni JR, Setsompop K. Accelerated spin-echo functional MRI using multisection excitation by simultaneous spin-echo interleaving (MESSI) with complex-encoded generalized slice dithered enhanced resolution (cgSlider) simultaneous multislice echo-planar imaging. Magn Reson Med. 2020 Jul; 84(1):206-220. PMID: 31840295.
    Citations:    
  7. Liao C, Stockmann J, Tian Q, Bilgic B, Arango NS, Manhard MK, Huang SY, Grissom WA, Wald LL, Setsompop K. High-fidelity, high-isotropic-resolution diffusion imaging through gSlider acquisition with B1+ and T1 corrections and integrated ?B0 /Rx shim array. Magn Reson Med. 2020 01; 83(1):56-67. PMID: 31373048.
    Citations:    
  8. Bilgic B, Chatnuntawech I, Manhard MK, Tian Q, Liao C, Iyer SS, Cauley SF, Huang SY, Polimeni JR, Wald LL, Setsompop K. Highly accelerated multishot echo planar imaging through synergistic machine learning and joint reconstruction. Magn Reson Med. 2019 10; 82(4):1343-1358. PMID: 31106902.
    Citations:    
  9. Manhard MK, Bilgic B, Liao C, Han S, Witzel T, Yen YF, Setsompop K. Accelerated whole-brain perfusion imaging using a simultaneous multislice spin-echo and gradient-echo sequence with joint virtual coil reconstruction. Magn Reson Med. 2019 09; 82(3):973-983. PMID: 31069861.
    Citations:    
  10. Haskell MW, Cauley SF, Bilgic B, Hossbach J, Splitthoff DN, Pfeuffer J, Setsompop K, Wald LL. Network Accelerated Motion Estimation and Reduction (NAMER): Convolutional neural network guided retrospective motion correction using a separable motion model. Magn Reson Med. 2019 10; 82(4):1452-1461. PMID: 31045278.
    Citations:    
  11. Liao C, Manhard MK, Bilgic B, Tian Q, Fan Q, Han S, Wang F, Park DJ, Witzel T, Zhong J, Wang H, Wald LL, Setsompop K. Phase-matched virtual coil reconstruction for highly accelerated diffusion echo-planar imaging. Neuroimage. 2019 07 01; 194:291-302. PMID: 30953837.
    Citations:    
  12. Polak D, Cauley S, Huang SY, Longo MG, Conklin J, Bilgic B, Ohringer N, Raithel E, Bachert P, Wald LL, Setsompop K. Highly-accelerated volumetric brain examination using optimized wave-CAIPI encoding. J Magn Reson Imaging. 2019 09; 50(3):961-974. PMID: 30734388.
    Citations:    
  13. Wang F, Dong Z, Reese TG, Bilgic B, Katherine Manhard M, Chen J, Polimeni JR, Wald LL, Setsompop K. Echo planar time-resolved imaging (EPTI). Magn Reson Med. 2019 06; 81(6):3599-3615. PMID: 30714198.
    Citations:    
  14. Yu FF, Chiang FL, Stephens N, Huang SY, Bilgic B, Tantiwongkosi B, Romero R. Characterization of normal-appearing white matter in multiple sclerosis using quantitative susceptibility mapping in conjunction with diffusion tensor imaging. Neuroradiology. 2019 Jan; 61(1):71-79. PMID: 30539215.
    Citations:    Fields:    Translation:Humans
  15. Ngo GC, Bilgic B, Gagoski BA, Sutton BP. Correction of magnetic field inhomogeneity effects for fast quantitative susceptibility mapping. Magn Reson Med. 2019 03; 81(3):1645-1658. PMID: 30387905.
    Citations:    Fields:    
  16. Milovic C, Bilgic B, Zhao B, Langkammer C, Tejos C, Acosta-Cabronero J. Weak-harmonic regularization for quantitative susceptibility mapping. Magn Reson Med. 2019 02; 81(2):1399-1411. PMID: 30265767.
    Citations:    Fields:    
  17. Kim TH, Bilgic B, Polak D, Setsompop K, Haldar JP. Wave-LORAKS: Combining wave encoding with structured low-rank matrix modeling for more highly accelerated 3D imaging. Magn Reson Med. 2019 03; 81(3):1620-1633. PMID: 30252157.
    Citations:    Fields:    
  18. Dong Z, Wang F, Reese TG, Manhard MK, Bilgic B, Wald LL, Guo H, Setsompop K. Tilted-CAIPI for highly accelerated distortion-free EPI with point spread function (PSF) encoding. Magn Reson Med. 2019 01; 81(1):377-392. PMID: 30229562.
    Citations:    Fields:    
  19. Yoon J, Gong E, Chatnuntawech I, Bilgic B, Lee J, Jung W, Ko J, Jung H, Setsompop K, Zaharchuk G, Kim EY, Pauly J, Lee J. Quantitative susceptibility mapping using deep neural network: QSMnet. Neuroimage. 2018 10 01; 179:199-206. PMID: 29894829.
    Citations:    Fields:    
  20. Wang F, Bilgic B, Dong Z, Manhard MK, Ohringer N, Zhao B, Haskell M, Cauley SF, Fan Q, Witzel T, Adalsteinsson E, Wald LL, Setsompop K. Motion-robust sub-millimeter isotropic diffusion imaging through motion corrected generalized slice dithered enhanced resolution (MC-gSlider) acquisition. Magn Reson Med. 2018 11; 80(5):1891-1906. PMID: 29607548.
    Citations: 1     Fields:    
  21. Wu Z, Bilgic B, He H, Tong Q, Sun Y, Du Y, Setsompop K, Zhong J. Wave-CAIPI ViSTa: highly accelerated whole-brain direct myelin water imaging with zero-padding reconstruction. Magn Reson Med. 2018 09; 80(3):1061-1073. PMID: 29388254.
    Citations:    Fields:    
  22. Bilgic B, Kim TH, Liao C, Manhard MK, Wald LL, Haldar JP, Setsompop K. Improving parallel imaging by jointly reconstructing multi-contrast data. Magn Reson Med. 2018 08; 80(2):619-632. PMID: 29322551.
    Citations: 1     Fields:    
  23. Milovic C, Bilgic B, Zhao B, Acosta-Cabronero J, Tejos C. Fast nonlinear susceptibility inversion with variational regularization. Magn Reson Med. 2018 08; 80(2):814-821. PMID: 29322560.
    Citations:    Fields:    
  24. Liao C, Bilgic B, Manhard MK, Zhao B, Cao X, Zhong J, Wald LL, Setsompop K. 3D MR fingerprinting with accelerated stack-of-spirals and hybrid sliding-window and GRAPPA reconstruction. Neuroimage. 2017 11 15; 162:13-22. PMID: 28842384.
    Citations: 3     Fields:    Translation:Humans
  25. Langkammer C, Schweser F, Shmueli K, Kames C, Li X, Guo L, Milovic C, Kim J, Wei H, Bredies K, Buch S, Guo Y, Liu Z, Meineke J, Rauscher A, Marques JP, Bilgic B. Quantitative susceptibility mapping: Report from the 2016 reconstruction challenge. Magn Reson Med. 2018 03; 79(3):1661-1673. PMID: 28762243.
    Citations: 3     Fields:    
  26. Bilgic B, Adalsteinsson E, Griswold MA, Wald LL, Setsompop K. Simultaneous multislice magnetic resonance fingerprinting with low-rank and subspace modeling. Conf Proc IEEE Eng Med Biol Soc. 2017 07; 2017:3264-3268. PMID: 29060594.
    Citations:    Fields:    
  27. Bilgic B, Ye H, Wald LL, Setsompop K. Simultaneous Time Interleaved MultiSlice (STIMS) for Rapid Susceptibility Weighted acquisition. Neuroimage. 2017 07 15; 155:577-586. PMID: 28435102.
    Citations:    Fields:    Translation:Humans
  28. Setsompop K, Fan Q, Stockmann J, Bilgic B, Huang S, Cauley SF, Nummenmaa A, Wang F, Rathi Y, Witzel T, Wald LL. High-resolution in vivo diffusion imaging of the human brain with generalized slice dithered enhanced resolution: Simultaneous multislice (gSlider-SMS). Magn Reson Med. 2018 Jan; 79(1):141-151. PMID: 28261904.
    Citations: 6     Fields:    Translation:Humans
  29. Polak D, Setsompop K, Cauley SF, Gagoski BA, Bhat H, Maier F, Bachert P, Wald LL, Bilgic B. Wave-CAIPI for highly accelerated MP-RAGE imaging. Magn Reson Med. 2018 Jan; 79(1):401-406. PMID: 28220617.
    Citations: 3     Fields:    Translation:Humans
  30. Soman S, Bregni JA, Bilgic B, Nemec U, Fan A, Liu Z, Barry RL, Du J, Main K, Yesavage J, Adamson MM, Moseley M, Wang Y. Susceptibility-Based Neuroimaging: Standard Methods, Clinical Applications, and Future Directions. Curr Radiol Rep. 2017 Mar; 5(3). PMID: 28695062.
    Citations: 2     
  31. Yarach U, In MH, Chatnuntawech I, Bilgic B, Godenschweger F, Mattern H, Sciarra A, Speck O. Model-based iterative reconstruction for single-shot EPI at 7T. Magn Reson Med. 2017 Dec; 78(6):2250-2264. PMID: 28185433.
    Citations: 1     Fields:    Translation:HumansCells
  32. Cauley SF, Setsompop K, Bilgic B, Bhat H, Gagoski B, Wald LL. Autocalibrated wave-CAIPI reconstruction; Joint optimization of k-space trajectory and parallel imaging reconstruction. Magn Reson Med. 2017 09; 78(3):1093-1099. PMID: 27770457.
    Citations: 3     Fields:    Translation:Humans
  33. Chatnuntawech I, McDaniel P, Cauley SF, Gagoski BA, Langkammer C, Martin A, Grant PE, Wald LL, Setsompop K, Adalsteinsson E, Bilgic B. Single-step quantitative susceptibility mapping with variational penalties. NMR Biomed. 2017 Apr; 30(4). PMID: 27332141.
    Citations: 2     Fields:    Translation:Humans
  34. Chatnuntawech I, Martin A, Bilgic B, Setsompop K, Adalsteinsson E, Schiavi E. Vectorial total generalized variation for accelerated multi-channel multi-contrast MRI. Magn Reson Imaging. 2016 Oct; 34(8):1161-70. PMID: 27262829.
    Citations:    
  35. Ye H, Cauley SF, Gagoski B, Bilgic B, Ma D, Jiang Y, Du YP, Griswold MA, Wald LL, Setsompop K. Simultaneous multislice magnetic resonance fingerprinting (SMS-MRF) with direct-spiral slice-GRAPPA (ds-SG) reconstruction. Magn Reson Med. 2017 05; 77(5):1966-1974. PMID: 27220881.
    Citations: 8     Fields:    Translation:Humans
  36. McDaniel P, Bilgic B, Fan AP, Stout JN, Adalsteinsson E. Mitigation of partial volume effects in susceptibility-based oxygenation measurements by joint utilization of magnitude and phase (JUMP). Magn Reson Med. 2017 04; 77(4):1713-1727. PMID: 27059521.
    Citations: 2     Fields:    Translation:Humans
  37. Bilgic B, Xie L, Dibb R, Langkammer C, Mutluay A, Ye H, Polimeni JR, Augustinack J, Liu C, Wald LL, Setsompop K. Rapid multi-orientation quantitative susceptibility mapping. Neuroimage. 2016 Jan 15; 125:1131-1141. PMID: 26277773.
    Citations: 14     Fields:    Translation:Humans
  38. Langkammer C, Bredies K, Poser BA, Barth M, Reishofer G, Fan AP, Bilgic B, Fazekas F, Mainero C, Ropele S. Fast quantitative susceptibility mapping using 3D EPI and total generalized variation. Neuroimage. 2015 May 01; 111:622-30. PMID: 25731991.
    Citations: 15     Fields:    Translation:Humans
  39. Gagoski BA, Bilgic B, Eichner C, Bhat H, Grant PE, Wald LL, Setsompop K. RARE/turbo spin echo imaging with Simultaneous Multislice Wave-CAIPI. Magn Reson Med. 2015 Mar; 73(3):929-938. PMID: 25640187.
    Citations: 9     Fields:    Translation:Humans
  40. Chatnuntawech I, Gagoski B, Bilgic B, Cauley SF, Setsompop K, Adalsteinsson E. Accelerated 1 H MRSI using randomly undersampled spiral-based k-space trajectories. Magn Reson Med. 2015 Jul; 74(1):13-24. PMID: 25079076.
    Citations: 6     Fields:    
  41. Bilgic B, Gagoski BA, Cauley SF, Fan AP, Polimeni JR, Grant PE, Wald LL, Setsompop K. Wave-CAIPI for highly accelerated 3D imaging. Magn Reson Med. 2015 Jun; 73(6):2152-62. PMID: 24986223.
    Citations: 25     Fields:    Translation:Humans
  42. Cauley SF, Xi Y, Bilgic B, Xia J, Adalsteinsson E, Balakrishnan V, Wald LL, Setsompop K. Fast reconstruction for multichannel compressed sensing using a hierarchically semiseparable solver. Magn Reson Med. 2015 Mar; 73(3):1034-40. PMID: 24639238.
    Citations: 7     Fields:    Translation:Humans
  43. Bilgic B, Fan AP, Polimeni JR, Cauley SF, Bianciardi M, Adalsteinsson E, Wald LL, Setsompop K. Fast quantitative susceptibility mapping with L1-regularization and automatic parameter selection. Magn Reson Med. 2014 Nov; 72(5):1444-59. PMID: 24259479.
    Citations: 22     Fields:    Translation:Humans
  44. Bilgic B, Chatnuntawech I, Fan AP, Setsompop K, Cauley SF, Wald LL, Adalsteinsson E. Fast image reconstruction with L2-regularization. J Magn Reson Imaging. 2014 Jul; 40(1):181-91. PMID: 24395184.
    Citations: 12     Fields:    Translation:Humans
  45. Fan AP, Bilgic B, Gagnon L, Witzel T, Bhat H, Rosen BR, Adalsteinsson E. Quantitative oxygenation venography from MRI phase. Magn Reson Med. 2014 Jul; 72(1):149-59. PMID: 24006229.
    Citations: 29     Fields:    Translation:Humans
  46. Bilgic B, Chatnuntawech I, Setsompop K, Cauley SF, Yendiki A, Wald LL, Adalsteinsson E. Fast dictionary-based reconstruction for diffusion spectrum imaging. IEEE Trans Med Imaging. 2013 Nov; 32(11):2022-33. PMID: 23846466.
    Citations: 1     Fields:    Translation:Humans
  47. Bilgic B, Setsompop K, Cohen-Adad J, Yendiki A, Wald LL, Adalsteinsson E. Accelerated diffusion spectrum imaging with compressed sensing using adaptive dictionaries. Magn Reson Med. 2012 Dec; 68(6):1747-54. PMID: 23008145.
    Citations: 22     Fields:    Translation:HumansCells
  48. Bilgic B, Gagoski B, Kok T, Adalsteinsson E. Lipid suppression in CSI with spatial priors and highly undersampled peripheral k-space. Magn Reson Med. 2013 Jun; 69(6):1501-11. PMID: 22807147.
    Citations: 9     Fields:    Translation:Humans
  49. Bilgic B, Setsompop K, Cohen-Adad J, Wedeen V, Wald LL, Adalsteinsson E. Accelerated diffusion spectrum imaging with compressed sensing using adaptive dictionaries. Med Image Comput Comput Assist Interv. 2012; 15(Pt 3):1-9. PMID: 23286107.
    Citations: 3     Fields:    Translation:Cells
  50. Bilgic B, Pfefferbaum A, Rohlfing T, Sullivan EV, Adalsteinsson E. MRI estimates of brain iron concentration in normal aging using quantitative susceptibility mapping. Neuroimage. 2012 Feb 01; 59(3):2625-35. PMID: 21925274.
    Citations: 91     Fields:    Translation:Humans
  51. Bilgic B, Goyal VK, Adalsteinsson E. Multi-contrast reconstruction with Bayesian compressed sensing. Magn Reson Med. 2011 Dec; 66(6):1601-15. PMID: 21671267.
    Citations: 16     Fields:    Translation:Humans
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Funded by the NIH National Center for Advancing Translational Sciences through its Clinical and Translational Science Awards Program, grant number UL1TR002541.