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Caroline V Magnain, Ph.D.


Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
  1. Yang J, Chang S, Chen IA, Kura S, Rosen GA, Saltiel NA, Huber BR, Varadarajan D, Balbastre Y, Magnain C, Chen SC, Fischl B, Mckee AC, Boas D, Wang H. Volumetric characterization of microvasculature in ex vivo human brain samples by serial sectioning optical coherence tomography. IEEE Trans Biomed Eng. 2022 May 13; PP. PMID: 35560084.
    Citations:    Fields:    
  2. Varadarajan D, Magnain C, Fogarty M, Boas DA, Fischl B, Wang H. A novel algorithm for multiplicative speckle noise reduction in ex vivo human brain OCT images. Neuroimage. 2022 08 15; 257:119304. PMID: 35568350.
    Citations:    Fields:    Translation:Humans
  3. Oltmer J, Slepneva N, Llamas Rodriguez J, Greve DN, Williams EM, Wang R, Champion SN, Lang-Orsini M, Nestor K, Fernandez-Ros N, Fischl B, Frosch MP, Magnain C, van der Kouwe AJW, Augustinack JC. Quantitative and histologically validated measures of the entorhinal subfields in ex vivo MRI. Brain Commun. 2022; 4(3):fcac074. PMID: 35620167; PMCID: PMC9128374.
    Citations: 1     
  4. Chang S, Varadarajan D, Yang J, Chen IA, Kura S, Magnain C, Augustinack JC, Fischl B, Greve DN, Boas DA, Wang H. Scalable mapping of myelin and neuron density in the human brain with micrometer resolution. Sci Rep. 2022 01 10; 12(1):363. PMID: 35013441; PMCID: PMC8748995.
    Citations:    Fields:    Translation:HumansCells
  5. Liu CJ, Ammon W, Jones RJ, Nolan J, Wang R, Chang S, Frosch MP, Yendiki A, Boas DA, Magnain C, Fischl B, Wang H. Refractive-index matching enhanced polarization sensitive optical coherence tomography quantification in human brain tissue. Biomed Opt Express. 2022 Jan 01; 13(1):358-372. PMID: 35154876; PMCID: PMC8803034.
  6. Peter L, Alexander DC, Magnain C, Iglesias JE. Uncertainty-Aware Annotation Protocol to Evaluate Deformable Registration Algorithms. IEEE Trans Med Imaging. 2021 08; 40(8):2053-2065. PMID: 33819151.
    Citations:    Fields:    
  7. Terrier LM, Hadjikhani N, Velut S, Magnain C, Amelot A, Bernard F, Zöllei L, Destrieux C. The trigeminal system: The meningovascular complex- A review. J Anat. 2021 07; 239(1):1-11. PMID: 33604906.
    Citations: 3     Fields:    Translation:Humans
  8. Yang J, Chen IA, Chang S, Tang J, Lee B, Kiliç K, Sunil S, Wang H, Varadarajan D, Magnain C, Chen SC, Costantini I, Pavone F, Fischl B, Boas DA. Improving the characterization of ex vivo human brain optical properties using high numerical aperture optical coherence tomography by spatially constraining the confocal parameters. Neurophotonics. 2020 Oct; 7(4):045005. PMID: 33094126.
    Citations: 4     
  9. Jones R, Grisot G, Augustinack J, Magnain C, Boas DA, Fischl B, Wang H, Yendiki A. Insight into the fundamental trade-offs of diffusion MRI from polarization-sensitive optical coherence tomography in ex vivo human brain. Neuroimage. 2020 07 01; 214:116704. PMID: 32151760; PMCID: PMC8488979.
    Citations: 10     Fields:    Translation:Humans
  10. Magnain C, Augustinack JC, Tirrell L, Fogarty M, Frosch MP, Boas D, Fischl B, Rockland KS. Colocalization of neurons in optical coherence microscopy and Nissl-stained histology in Brodmann's area 32 and area 21. Brain Struct Funct. 2019 Jan; 224(1):351-362. PMID: 30328512; PMCID: PMC6369026.
    Citations: 5     Fields:    Translation:HumansCells
  11. Wang H, Magnain C, Sakadžic S, Fischl B, Boas DA. Characterizing the optical properties of human brain tissue with high numerical aperture optical coherence tomography. Biomed Opt Express. 2017 Dec 01; 8(12):5617-5636. PMID: 29296492; PMCID: PMC5745107.
    Citations: 15     
  12. Wang H, Magnain C, Wang R, Dubb J, Varjabedian A, Tirrell LS, Stevens A, Augustinack JC, Konukoglu E, Aganj I, Frosch MP, Schmahmann JD, Fischl B, Boas DA. as-PSOCT: Volumetric microscopic imaging of human brain architecture and connectivity. Neuroimage. 2018 01 15; 165:56-68. PMID: 29017866.
    Citations: 16     Fields:    Translation:Humans
  13. Wang H, Akkin T, Magnain C, Wang R, Dubb J, Kostis WJ, Yaseen MA, Cramer A, Sakadžic S, Boas D. Polarization sensitive optical coherence microscopy for brain imaging. Opt Lett. 2016 May 15; 41(10):2213-6. PMID: 27176965.
    Citations: 35     Fields:    Translation:Animals
  14. Magnain C, Wang H, Sakadžic S, Fischl B, Boas DA. En face speckle reduction in optical coherence microscopy by frequency compounding. Opt Lett. 2016 May 01; 41(9):1925-8. PMID: 27128040.
    Citations: 5     Fields:    
  15. Magnain C, Augustinack JC, Konukoglu E, Frosch MP, Sakadžic S, Varjabedian A, Garcia N, Wedeen VJ, Boas DA, Fischl B. Optical coherence tomography visualizes neurons in human entorhinal cortex. Neurophotonics. 2015 Feb 09; 2(1):015004. PMID: 25741528; PMCID: PMC4346095.
    Citations: 24     
  16. Wachinger C, Golland P, Magnain C, Fischl B, Reuter M. Multi-modal robust inverse-consistent linear registration. Hum Brain Mapp. 2015 Apr; 36(4):1365-80. PMID: 25470798.
    Citations: 2     Fields:    Translation:Humans
  17. Magnain C, Castel A, Boucneau T, Simonutti M, Ferezou I, Rancillac A, Vitalis T, Sahel JA, Paques M, Atlan M. Holographic laser Doppler imaging of microvascular blood flow. J Opt Soc Am A Opt Image Sci Vis. 2014 Dec 01; 31(12):2723-35. PMID: 25606762.
    Citations: 7     Fields:    Translation:Animals
  18. Magnain C, Augustinack JC, Reuter M, Wachinger C, Frosch MP, Ragan T, Akkin T, Wedeen VJ, Boas DA, Fischl B. Blockface histology with optical coherence tomography: a comparison with Nissl staining. Neuroimage. 2014 Jan 01; 84:524-33. PMID: 24041872.
    Citations: 49     Fields:    Translation:HumansCells
  19. Miyamoto N, Pham LD, Hayakawa K, Matsuzaki T, Seo JH, Magnain C, Ayata C, Kim KW, Boas D, Lo EH, Arai K. Age-related decline in oligodendrogenesis retards white matter repair in mice. Stroke. 2013 Sep; 44(9):2573-8. PMID: 23881957.
    Citations: 50     Fields:    Translation:AnimalsCells
  20. Augustinack JC, Magnain C, Reuter M, van der Kouwe AJ, Boas D, Fischl B. MRI parcellation of ex vivo medial temporal lobe. Neuroimage. 2014 Jun; 93 Pt 2:252-9. PMID: 23702414.
    Citations: 21     Fields:    Translation:Humans
  21. Simonutti M, Paques M, Sahel JA, Gross M, Samson B, Magnain C, Atlan M. Holographic laser Doppler ophthalmoscopy. Opt Lett. 2010 Jun 15; 35(12):1941-3. PMID: 20548346.
    Citations: 2     Fields:    Translation:Animals
  22. Elias M, Magnain C, Frigerio JM. Contribution of surface state characterization to studies of works of art. Appl Opt. 2010 Apr 10; 49(11):2151-60. PMID: 20390017.
    Citations:    Fields:    
  23. Magnain C, Elias M, Frigerio JM. Skin color modeling using the radiative transfer equation solved by the auxiliary function method: inverse problem. J Opt Soc Am A Opt Image Sci Vis. 2008 Jul; 25(7):1737-43. PMID: 18594632.
    Citations: 1     Fields:    Translation:HumansCells
  24. Magnain C, Elias M, Frigerio JM. Skin color modeling using the radiative transfer equation solved by the auxiliary function method. J Opt Soc Am A Opt Image Sci Vis. 2007 Aug; 24(8):2196-205. PMID: 17621323.
    Citations: 2     Fields:    Translation:Humans
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Funded by the NIH National Center for Advancing Translational Sciences through its Clinical and Translational Science Awards Program, grant number UL1TR002541.