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Charles William O'Donnell, Ph.D.

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Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
  1. Ferreira LM, Meissner TB, Mikkelsen TS, Mallard W, O'Donnell CW, Tilburgs T, Gomes HA, Camahort R, Sherwood RI, Gifford DK, Rinn JL, Cowan CA, Strominger JL. A distant trophoblast-specific enhancer controls HLA-G expression at the maternal-fetal interface. Proc Natl Acad Sci U S A. 2016 May 10; 113(19):5364-9. PMID: 27078102.
    Citations: 12     Fields:    Translation:HumansCells
  2. Waldispühl J, O'Donnell CW, Will S, Devadas S, Backofen R, Berger B. Simultaneous alignment and folding of protein sequences. J Comput Biol. 2014 Jul; 21(7):477-91. PMID: 24766258.
    Citations:    Fields:    Translation:HumansCells
  3. Hrvatin S, Deng F, O'Donnell CW, Gifford DK, Melton DA. MARIS: method for analyzing RNA following intracellular sorting. PLoS One. 2014; 9(3):e89459. PMID: 24594682.
    Citations: 33     Fields:    Translation:HumansCells
  4. Hrvatin S, O'Donnell CW, Deng F, Millman JR, Pagliuca FW, DiIorio P, Rezania A, Gifford DK, Melton DA. Differentiated human stem cells resemble fetal, not adult, ß cells. Proc Natl Acad Sci U S A. 2014 Feb 25; 111(8):3038-43. PMID: 24516164.
    Citations: 55     Fields:    Translation:HumansCells
  5. Sherwood RI, Hashimoto T, O'Donnell CW, Lewis S, Barkal AA, van Hoff JP, Karun V, Jaakkola T, Gifford DK. Discovery of directional and nondirectional pioneer transcription factors by modeling DNase profile magnitude and shape. Nat Biotechnol. 2014 Feb; 32(2):171-178. PMID: 24441470.
    Citations: 109     Fields:    Translation:Cells
  6. Levin A, Lis M, Ponty Y, O'Donnell CW, Devadas S, Berger B, Waldispühl J. A global sampling approach to designing and reengineering RNA secondary structures. Nucleic Acids Res. 2012 Nov 01; 40(20):10041-52. PMID: 22941632.
    Citations: 3     Fields:    Translation:Cells
  7. Bryan AW, O'Donnell CW, Menke M, Cowen LJ, Lindquist S, Berger B. STITCHER: Dynamic assembly of likely amyloid and prion ß-structures from secondary structure predictions. Proteins. 2012 Feb; 80(2):410-20. PMID: 22095906.
    Citations: 7     Fields:    Translation:Cells
  8. Shenker S, O'Donnell CW, Devadas S, Berger B, Waldispühl J. Efficient traversal of beta-sheet protein folding pathways using ensemble models. J Comput Biol. 2011 Nov; 18(11):1635-47. PMID: 21958108.
    Citations: 2     Fields:    Translation:Cells
  9. Halfmann R, Alberti S, Krishnan R, Lyle N, O'Donnell CW, King OD, Berger B, Pappu RV, Lindquist S. Opposing effects of glutamine and asparagine govern prion formation by intrinsically disordered proteins. Mol Cell. 2011 Jul 08; 43(1):72-84. PMID: 21726811.
    Citations: 64     Fields:    Translation:AnimalsCells
  10. O'Donnell CW, Waldispühl J, Lis M, Halfmann R, Devadas S, Lindquist S, Berger B. A method for probing the mutational landscape of amyloid structure. Bioinformatics. 2011 Jul 01; 27(13):i34-42. PMID: 21685090.
    Citations: 17     Fields:    Translation:HumansAnimalsCells
  11. Waldispühl J, O'Donnell CW, Devadas S, Clote P, Berger B. Modeling ensembles of transmembrane beta-barrel proteins. Proteins. 2008 May 15; 71(3):1097-112. PMID: 18004792.
    Citations: 12     Fields:    Translation:Cells
  12. Gassend B, O'Donnell CW, Thies W, Lee A, van Dijk M, Devadas S. Learning biophysically-motivated parameters for alpha helix prediction. BMC Bioinformatics. 2007 May 24; 8 Suppl 5:S3. PMID: 17570862.
    Citations:    Fields:    Translation:Cells
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Funded by the NIH National Center for Advancing Translational Sciences through its Clinical and Translational Science Awards Program, grant number UL1TR002541.