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Sila Kurugol, Ph.D.

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Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
  1. Ariyurek C, Wallace TE, Kober T, Kurugol S, Afacan O. Prospective motion correction in kidney MRI using FID navigators. Magn Reson Med. 2023 01; 89(1):276-285. PMID: 36063497; PMCID: PMC9670860.
    Citations:    Fields:    Translation:Humans
  2. Shashi KK, Lee T, Kurugol S, Garg H, Ghelani SJ, Nelson CP, Chow JS. Normative values for ureteral diameter in children. Pediatr Radiol. 2022 07; 52(8):1492-1499. PMID: 35386015.
    Citations:    Fields:    Translation:Humans
  3. Grattan-Smith JD, Chow J, Kurugol S, Jones RA. Quantitative renal magnetic resonance imaging: magnetic resonance urography. Pediatr Radiol. 2022 Feb; 52(2):228-248. PMID: 35022851; PMCID: PMC9670866.
    Citations:    Fields:    Translation:Humans
  4. Koçanaogullari A, Ariyurek C, Afacan O, Kurugol S. Learning the Regularization in DCE-MR Image Reconstruction for Functional Imaging of Kidneys. IEEE Access. 2022; 10:4102-4111. PMID: 35929000; PMCID: PMC9348606.
    Citations:    
  5. Asaturyan H, Villarini B, Sarao K, Chow JS, Afacan O, Kurugol S. Improving Automatic Renal Segmentation in Clinically Normal and Abnormal Paediatric DCE-MRI via Contrast Maximisation and Convolutional Networks for Computing Markers of Kidney Function. Sensors (Basel). 2021 Nov 28; 21(23). PMID: 34883946.
    Citations:    Fields:    Translation:Humans
  6. Vasylechko SD, Warfield SK, Afacan O, Kurugol S. Self-supervised IVIM DWI parameter estimation with a physics based forward model. Magn Reson Med. 2022 02; 87(2):904-914. PMID: 34687065; PMCID: PMC8627432.
    Citations: 1     Fields:    Translation:Humans
  7. Villarini B, Asaturyan H, Kurugol S, Afacan O, Bell JD, Thomas EL. 3D Deep Learning for Anatomical Structure Segmentation in Multiple Imaging Modalities. Proc IEEE Int Symp Comput Based Med Syst. 2021 Jun; 2021:166-171. PMID: 35224185; PMCID: PMC8867534.
    Citations: 1     
  8. Coll-Font J, Afacan O, Hoge S, Garg H, Shashi K, Marami B, Gholipour A, Chow J, Warfield S, Kurugol S. Retrospective Distortion and Motion Correction for Free-Breathing DW-MRI of the Kidneys Using Dual-Echo EPI and Slice-to-Volume Registration. J Magn Reson Imaging. 2021 05; 53(5):1432-1443. PMID: 33382173; PMCID: PMC8046730.
    Citations: 1     Fields:    Translation:Humans
  9. Coll-Font J, Afacan O, Chow JS, Lee RS, Warfield SK, Kurugol S. Modeling dynamic radial contrast enhanced MRI with linear time invariant systems for motion correction in quantitative assessment of kidney function. Med Image Anal. 2021 01; 67:101880. PMID: 33147561.
    Citations: 4     Fields:    Translation:Humans
  10. Afacan O, Hoge WS, Wallace TE, Gholipour A, Kurugol S, Warfield SK. Simultaneous Motion and Distortion Correction Using Dual-Echo Diffusion-Weighted MRI. J Neuroimaging. 2020 05; 30(3):276-285. PMID: 32374453.
    Citations: 5     Fields:    Translation:Humans
  11. Kurugol S, Afacan O, Lee RS, Seager CM, Ferguson MA, Stein DR, Nichols RC, Dugan M, Stemmer A, Warfield SK, Chow JS. Correction to: Prospective pediatric study comparing glomerular filtration rate estimates based on motion-robust dynamic contrast-enhanced magnetic resonance imaging and serum creatinine (eGFR) to 99mTc DTPA. Pediatr Radiol. 2020 May; 50(5):755-756. PMID: 32170349.
    Citations:    Fields:    
  12. Kurugol S, Afacan O, Lee RS, Seager CM, Ferguson MA, Stein DR, Nichols RC, Dugan M, Stemmer A, Warfield SK, Chow JS. Prospective pediatric study comparing glomerular filtration rate estimates based on motion-robust dynamic contrast-enhanced magnetic resonance imaging and serum creatinine (eGFR) to 99mTc DTPA. Pediatr Radiol. 2020 05; 50(5):698-705. PMID: 31984436.
    Citations: 5     Fields:    Translation:Humans
  13. Coll-Font J, Afacan O, Chow JS, Lee RS, Stemmer A, Warfield SK, Kurugol S. Bulk motion-compensated DCE-MRI for functional imaging of kidneys in newborns. J Magn Reson Imaging. 2020 07; 52(1):207-216. PMID: 31837071.
    Citations: 6     Fields:    Translation:Humans
  14. Kurugol S, Seager CM, Thaker H, Coll-Font J, Afacan O, Nichols RC, Warfield SK, Lee RS, Chow JS. Feed and wrap magnetic resonance urography provides anatomic and functional imaging in infants without anesthesia. J Pediatr Urol. 2020 Feb; 16(1):116-120. PMID: 31889687.
    Citations: 6     Fields:    Translation:Humans
  15. Coll-Font J, Afacan O, Chow J, Kurugol S. Linear Time Invariant Model based Motion Correction (LiMo-MoCo) of Dynamic Radial Contrast Enhanced MRI. Med Image Comput Comput Assist Interv. 2019 Oct; 11765:430-437. PMID: 32483560.
    Citations:    Fields:    
  16. Sourati J, Gholipour A, Dy JG, Tomas-Fernandez X, Kurugol S, Warfield SK. Intelligent Labeling Based on Fisher Information for Medical Image Segmentation Using Deep Learning. IEEE Trans Med Imaging. 2019 11; 38(11):2642-2653. PMID: 30932833.
    Citations: 3     Fields:    Translation:Humans
  17. Lamash Y, Kurugol S, Freiman M, Perez-Rossello JM, Callahan MJ, Bousvaros A, Warfield SK. Curved planar reformatting and convolutional neural network-based segmentation of the small bowel for visualization and quantitative assessment of pediatric Crohn's disease from MRI. J Magn Reson Imaging. 2019 06; 49(6):1565-1576. PMID: 30353957.
    Citations: 7     Fields:    Translation:Humans
  18. Lamash Y, Kurugol S, Warfield SK. Semi-Automated Extraction of Crohns Disease MR Imaging Markers using a 3D Residual CNN with Distance Prior. Deep Learn Med Image Anal Multimodal Learn Clin Decis Support (2018). 2018 Sep; 11045:218-226. PMID: 30450491; PMCID: PMC6235454.
    Citations: 2     
  19. Sourati J, Gholipour A, Dy JG, Kurugol S, Warfield SK. Active Deep Learning with Fisher Information for Patch-wise Semantic Segmentation. Deep Learn Med Image Anal Multimodal Learn Clin Decis Support (2018). 2018 Sep; 11045:83-91. PMID: 30450490; PMCID: PMC6235453.
    Citations: 9     
  20. Haghighi M, Warfield SK, Kurugol S. AUTOMATIC RENAL SEGMENTATION IN DCE-MRI USING CONVOLUTIONAL NEURAL NETWORKS. Proc IEEE Int Symp Biomed Imaging. 2018 Apr; 2018:1534-1537. PMID: 30473744; PMCID: PMC6248325.
    Citations: 12     
  21. Kurugol S, Marami B, Afacan O, Warfield SK, Gholipour A. Motion-Robust Spatially Constrained Parameter Estimation in Renal Diffusion-Weighted MRI by 3D Motion Tracking and Correction of Sequential Slices. Mol Imaging Reconstr Anal Mov Body Organs Stroke Imaging Treat (2017). 2017; 10555:75-85. PMID: 29457154; PMCID: PMC5810407.
    Citations: 3     
  22. Kurugol S, Freiman M, Afacan O, Domachevsky L, Perez-Rossello JM, Callahan MJ, Warfield SK. Motion-robust parameter estimation in abdominal diffusion-weighted MRI by simultaneous image registration and model estimation. Med Image Anal. 2017 Jul; 39:124-132. PMID: 28494271.
    Citations: 9     Fields:    Translation:Humans
  23. Araki T, Putman RK, Hatabu H, Gao W, Dupuis J, Latourelle JC, Nishino M, Zazueta OE, Kurugol S, Ross JC, San José Estépar R, Schwartz DA, Rosas IO, Washko GR, O'Connor GT, Hunninghake GM. Development and Progression of Interstitial Lung Abnormalities in the Framingham Heart Study. Am J Respir Crit Care Med. 2016 12 15; 194(12):1514-1522. PMID: 27314401; PMCID: PMC5215030.
    Citations: 112     Fields:    Translation:Humans
  24. Kurugol S, Freiman M, Afacan O, Perez-Rossello JM, Callahan MJ, Warfield SK. Spatially-constrained probability distribution model of incoherent motion (SPIM) for abdominal diffusion-weighted MRI. Med Image Anal. 2016 08; 32:173-83. PMID: 27111049.
    Citations: 8     Fields:    Translation:Humans
  25. Kurugol S, Come CE, Diaz AA, Ross JC, Kinney GL, Black-Shinn JL, Hokanson JE, Budoff MJ, Washko GR, San Jose Estepar R. Automated quantitative 3D analysis of aorta size, morphology, and mural calcification distributions. Med Phys. 2015 Sep; 42(9):5467-78. PMID: 26328995.
    Citations: 16     Fields:    Translation:Humans
  26. Diaz AA, Young TP, Kurugol S, Eckbo E, Muralidhar N, Chapman JK, Kinney GL, Ross JC, San Jose Estepar R, Harmouche R, Black-Shinn JL, Budoff M, Bowler RP, Hokanson J, Washko GR. Abdominal Visceral Adipose Tissue is Associated with Myocardial Infarction in Patients with COPD. Chronic Obstr Pulm Dis. 2015; 2(1):8-16. PMID: 25914898.
    Citations: 17     
  27. Kurugol S, Freiman M, Afacan O, Domachevsky L, Perez-Rossello JM, Callahan MJ, Warfield SK. Motion Compensated Abdominal Diffusion Weighted MRI by Simultaneous Image Registration and Model Estimation (SIR-ME). Med Image Comput Comput Assist Interv. 2015; 9351:501-9. PMID: 26550612.
    Citations: 3     Fields:    Translation:Humans
  28. Diaz AA, Hardin ME, Come CE, San José Estépar R, Ross JC, Kurugol S, Okajima Y, Han MK, Kim V, Ramsdell J, Silverman EK, Crapo JD, Lynch DA, Make B, Barr RG, Hersh CP, Washko GR. Childhood-onset asthma in smokers. association between CT measures of airway size, lung function, and chronic airflow obstruction. Ann Am Thorac Soc. 2014 Nov; 11(9):1371-8. PMID: 25296268.
    Citations: 9     Fields:    Translation:HumansCTClinical Trials
  29. Kurugol S, Kose K, Park B, Dy JG, Brooks DH, Rajadhyaksha M. Automated delineation of dermal-epidermal junction in reflectance confocal microscopy image stacks of human skin. J Invest Dermatol. 2015 Mar; 135(3):710-717. PMID: 25184959.
    Citations: 17     Fields:    Translation:HumansCells
  30. Kurugol S, Washko GR, Estepar RS. RANKING AND CLASSIFICATION OF MONOTONIC EMPHYSEMA PATTERNS WITH A MULTI-CLASS HIERARCHICAL APPROACH. Proc IEEE Int Symp Biomed Imaging. 2014 Apr; 2014:1031-1034. PMID: 25485040; PMCID: PMC4254822.
    Citations: 1     
  31. Hunninghake GM, Hatabu H, Okajima Y, Gao W, Dupuis J, Latourelle JC, Nishino M, Araki T, Zazueta OE, Kurugol S, Ross JC, San José Estépar R, Murphy E, Steele MP, Loyd JE, Schwarz MI, Fingerlin TE, Rosas IO, Washko GR, O'Connor GT, Schwartz DA. MUC5B promoter polymorphism and interstitial lung abnormalities. N Engl J Med. 2013 Jun 06; 368(23):2192-200. PMID: 23692170; PMCID: PMC3747636.
    Citations: 184     Fields:    Translation:Humans
  32. Zulueta-Coarasa T, Kurugol S, Ross JC, Washko GG, San José Estépar R. Emphysema classification based on embedded probabilistic PCA. Annu Int Conf IEEE Eng Med Biol Soc. 2013; 2013:3969-72. PMID: 24110601.
    Citations: 2     Fields:    Translation:Humans
  33. Kurugol, S, San Jose Estepar, R, Ross, J, Washko, GR . Aorta segmentation with a 3D level set approach and quantification of aortic calcifications in non-contrast chest CT. Engineering in Medicine and Biology Society (EMBC), 2012 Annual International Conference of the IEEE. 2012; 2343 - 2346.
  34. Kurugol S, Ross J, San Jose Estepar R, Washko G. Automated 3D Aorta Segmentation and Calcification Quantification in Non-Contrast Chest CT. In IEEE Int. Symp. on Biomedical Imaging (ISBI'12). 2012.
  35. Kurugol S, Rajadhyaksha M, Dy JG, Brooks DH. Validation Study of Automated Dermal/Epidermal Junction Localization Algorithm in Reflectance Confocal Microscopy Images of Skin. Proc SPIE Int Soc Opt Eng. 2012 Feb 09; 8207. PMID: 24376908.
    Citations: 3     
  36. Kurugol S, San Jose Estepar R, Ross J, Washko GR. Aorta segmentation with a 3D level set approach and quantification of aortic calcifications in non-contrast chest CT. Annu Int Conf IEEE Eng Med Biol Soc. 2012; 2012:2343-6. PMID: 23366394.
    Citations: 14     Fields:    Translation:Humans
  37. Kurugol S, Rajadhyaksha M, Dy JG, Brooks DH. Validation study of automated dermal/epidermal junction localization algorithm in reflectance confocal microscopy images of skin. Proc SPIE. 2012.
  38. Kurugol S. Machine learning and model based 3D segmentation algorithms for challenging medical imaging problems. PhD Thesis. 2011.
  39. Kurugol S, Dy JG, Brooks DH, Rajadhyaksha M. Pilot study of semiautomated localization of the dermal/epidermal junction in reflectance confocal microscopy images of skin. J Biomed Opt. 2011 Mar; 16(3):036005. PMID: 21456869.
    Citations: 12     Fields:    Translation:Humans
  40. Kurugol S, Bas E, Erdogmus D, Dy JG, Sharp GC, Brooks DH. Centerline extraction with principal curve tracing to improve 3D level set esophagus segmentation in CT images. Annu Int Conf IEEE Eng Med Biol Soc. 2011; 2011:3403-6. PMID: 22255070.
    Citations: 2     Fields:    Translation:Humans
  41. Kurugol S, Dy JG, Rajadhyaksha M, Gossage KW, Weissman J, Brooks DH. Semi-automated Algorithm for Localization of Dermal/ Epidermal Junction in Reflectance Confocal Microscopy Images of Human Skin. Proc SPIE Int Soc Opt Eng. 2011; 7904:7901A. PMID: 21709746.
    Citations: 4     
  42. Kurugol S, Ozay N, Dy JG, Sharp GC, Brooks DH. Locally Deformable Shape Model to Improve 3D Level Set based Esophagus Segmentation. Proc IAPR Int Conf Pattern Recogn. 2010 Aug 23; 3955-3958. PMID: 21731883.
    Citations: 2     
  43. Kurugol S, Sharp G, Dy J, Brooks DH. 3D Level Set Esophagus Segmentation in Thoracic CT Images using Spatial, Appearance and Shape Models. In IEEE Int. Symp. on Biomedical Imaging (ISBI'10). 2010.
  44. Kurugol S, Ozay N, Sharp G, Dy J, Brooks DH. Esophagus Segmentation in Thoracic CT Images for Radiotherapy Planning. The American Association of Physicists in Medicine 51st Annual Meeting (AAPM'09). 2009.
  45. Kurugol S, Dy JG, Rajadhyaksha M, Brooks DH. Localizing the Dermis/Epidermis Boundary in Reflectance Confocal Microscopy Images with a Hybrid Classification Algorithm. In IEEE Int. Symp. on Biomedical Imaging (ISBI'09). 2009; 1322-1325.
  46. Kurugol S, Dy JG, Rajadhyaksha M, Brooks DH. Detection of the dermis/epidermis boundary in reflectance confocal images using multi-scale classifier with adaptive texture features. In IEEE Int. Symp. on Biomedical Imaging (ISBI'08). 2008; 492-495.
  47. Kurugol S. Dynamic DRR Scheduling Algorithm for Flow Level QOS Assurances of Elastic Traffic. M.S. Thesis. 2006.
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