Harvard Catalyst Profiles

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Jayashree Kalpathy-Cramer, Ph.D.

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Research
research activities and funding
The research activities and funding listed below are automatically derived from NIH ExPORTER and other sources, which might result in incorrect or missing items. Faculty can login to make corrections and additions.
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  1. R21EY031883 (KALPATHY-CRAMER, JAYASHREE) Sep 30, 2020 - Aug 31, 2022
    NIH
    Robust AI to develop risk models in retinopathy of prematurity using deep learning
    Role: Principal Investigator
  2. U01CA242879 (RUBIN, DANIEL L) Sep 16, 2019 - Aug 31, 2022
    NIH
    Distributed Learning of Deep Learning Models for Cancer Research
    Role: Co-Principal Investigator
  3. U24CA180927 (KALPATHY-CRAMER, JAYASHREE) Sep 1, 2014 - Aug 31, 2019
    NIH
    Informatics Tools for Optimized Imaging Biomarkers for Cancer Research&Discovery
    Role: Principal Investigator
  4. R21EY022387 (KALPATHY-CRAMER, JAYASHREE) Sep 1, 2013 - Aug 31, 2016
    NIH
    Automated retinopathy of prematurity classification using machine learning
    Role: Co-Principal Investigator
  5. U01CA154601 (KALPATHY-CRAMER, JAYASHREE) May 6, 2011 - Apr 30, 2018
    NIH
    Quantitative MRI of Glioblastoma Response
    Role: Principal Investigator

Bibliographic
selected publications
Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
  1. Gupta S, Kumar S, Chang K, Lu C, Singh P, Kalpathy-Cramer J. Collaborative Privacy-preserving Approaches for Distributed Deep Learning Using Multi-Institutional Data. Radiographics. 2023 Apr; 43(4):e220107. PMID: 36862082.
    Citations:    Fields:    
  2. Konz N, Buda M, Gu H, Saha A, Yang J, Chledowski J, Park J, Witowski J, Geras KJ, Shoshan Y, Gilboa-Solomon F, Khapun D, Ratner V, Barkan E, Ozery-Flato M, Martí R, Omigbodun A, Marasinou C, Nakhaei N, Hsu W, Sahu P, Hossain MB, Lee J, Santos C, Przelaskowski A, Kalpathy-Cramer J, Bearce B, Cha K, Farahani K, Petrick N, Hadjiiski L, Drukker K, Armato SG, Mazurowski MA. A Competition, Benchmark, Code, and Data for Using Artificial Intelligence to Detect Lesions in Digital Breast Tomosynthesis. JAMA Netw Open. 2023 02 01; 6(2):e230524. PMID: 36821110; PMCID: PMC9951043.
    Citations:    Fields:    
  3. Eilts SK, Pfeil JM, Poschkamp B, Krohne TU, Eter N, Barth T, Guthoff R, Lagrèze W, Grundel M, Bründer MC, Busch M, Kalpathy-Cramer J, Chiang MF, Chan RVP, Coyner AS, Ostmo S, Campbell JP, Stahl A. Assessment of Retinopathy of Prematurity Regression and Reactivation Using an Artificial Intelligence-Based Vascular Severity Score. JAMA Netw Open. 2023 01 03; 6(1):e2251512. PMID: 36656578; PMCID: PMC9857423.
    Citations:    Fields:    Translation:Humans
  4. Sobhy M, Cole E, Jabbehdari S, Valikodath NG, Al-Khaled T, Kalinoski L, Chervinko M, Cherwek DH, Chuluunkhuu C, Shah PK, K C S, Jonas KE, Scanzera A, Yap VL, Yeh S, Kalpathy-Cramer J, Chiang MF, Campbell JP, Chan RVP. Operationalization of Retinopathy of Prematurity Screening by the Application of the Essential Public Health Services Framework. Int Ophthalmol Clin. 2023 Jan 01; 63(1):39-63. PMID: 36598833; PMCID: PMC9839316.
    Citations:    Fields:    Translation:Humans
  5. Gidwani M, Chang K, Patel JB, Hoebel KV, Ahmed SR, Singh P, Fuller CD, Kalpathy-Cramer J. Inconsistent Partitioning and Unproductive Feature Associations Yield Idealized Radiomic Models. Radiology. 2022 Dec 20; 220715. PMID: 36537895.
    Citations:    Fields:    
  6. Cox M, Panagides JC, Tabari A, Kalva S, Kalpathy-Cramer J, Daye D. Risk stratification with explainable machine learning for 30-day procedure-related mortality and 30-day unplanned readmission in patients with peripheral arterial disease. PLoS One. 2022; 17(11):e0277507. PMID: 36409699; PMCID: PMC9678279.
    Citations:    Fields:    Translation:Humans
  7. Lemay A, Hoebel K, Bridge CP, Befano B, De Sanjosé S, Egemen D, Rodriguez AC, Schiffman M, Campbell JP, Kalpathy-Cramer J. Improving the repeatability of deep learning models with Monte Carlo dropout. NPJ Digit Med. 2022 Nov 18; 5(1):174. PMID: 36400939; PMCID: PMC9674698.
    Citations:    
  8. Brink L, Coombs LP, Kattil Veettil D, Kuchipudi K, Marella S, Schmidt K, Nair SS, Tilkin M, Treml C, Chang K, Kalpathy-Cramer J. ACR's Connect and AI-LAB technical framework. JAMIA Open. 2022 Dec; 5(4):ooac094. PMID: 36380846; PMCID: PMC9651971.
    Citations:    
  9. Patel NJ, D'Silva KM, Li MD, Hsu TYT, DiIorio M, Fu X, Cook C, Prisco L, Martin L, Vanni KMM, Zaccardelli A, Zhang Y, Kalpathy-Cramer J, Sparks JA, Wallace ZS. Assessing the Severity of COVID-19 Lung Injury in Rheumatic Diseases Versus the General Population Using Deep Learning-Derived Chest Radiograph Scores. Arthritis Care Res (Hoboken). 2023 03; 75(3):657-666. PMID: 35313091; PMCID: PMC9081965.
    Citations:    Fields:    
  10. Kumar S, Lakshminarayanan A, Chang K, Guretno F, Mien IH, Kalpathy-Cramer J, Krishnaswamy P, Singh P. Towards More Efficient Data Valuation in Healthcare Federated Learning using Ensembling. Distrib Collab Fed Learn Afford AI Healthc Resour Div Glob Health (2022). 2022 Sep; 13573:119-129. PMID: 36745141; PMCID: PMC9890952.
    Citations:    
  11. Trivedi A, Robinson C, Blazes M, Ortiz A, Desbiens J, Gupta S, Dodhia R, Bhatraju PK, Liles WC, Kalpathy-Cramer J, Lee AY, Lavista Ferres JM. Deep learning models for COVID-19 chest x-ray classification: Preventing shortcut learning using feature disentanglement. PLoS One. 2022; 17(10):e0274098. PMID: 36201483; PMCID: PMC9536609.
    Citations: 2     Fields:    Translation:Humans
  12. Robinson-Weiss C, Patel J, Bizzo BC, Glazer DI, Bridge CP, Andriole KP, Dabiri B, Chin JK, Dreyer K, Kalpathy-Cramer J, Mayo-Smith WW. Machine Learning for Adrenal Gland Segmentation and Classification of Normal and Adrenal Masses at CT. Radiology. 2023 Feb; 306(2):e220101. PMID: 36125375.
    Citations:    Fields:    Translation:Humans
  13. Zhang M, Qu L, Singh P, Kalpathy-Cramer J, Rubin DL. SplitAVG: A Heterogeneity-Aware Federated Deep Learning Method for Medical Imaging. IEEE J Biomed Health Inform. 2022 09; 26(9):4635-4644. PMID: 35749336; PMCID: PMC9749741.
    Citations:    Fields:    
  14. Bridge CP, Gorman C, Pieper S, Doyle SW, Lennerz JK, Kalpathy-Cramer J, Clunie DA, Fedorov AY, Herrmann MD. Highdicom: a Python Library for Standardized Encoding of Image Annotations and Machine Learning Model Outputs in Pathology and Radiology. J Digit Imaging. 2022 12; 35(6):1719-1737. PMID: 35995898; PMCID: PMC9712874.
    Citations:    Fields:    Translation:Humans
  15. Coyner AS, Oh MA, Shah PK, Singh P, Ostmo S, Valikodath NG, Cole E, Al-Khaled T, Bajimaya S, K C S, Chuluunbat T, Munkhuu B, Subramanian P, Venkatapathy N, Jonas KE, Hallak JA, Chan RVP, Chiang MF, Kalpathy-Cramer J, Campbell JP. External Validation of a Retinopathy of Prematurity Screening Model Using Artificial Intelligence in 3 Low- and Middle-Income Populations. JAMA Ophthalmol. 2022 08 01; 140(8):791-798. PMID: 35797036; PMCID: PMC9264225.
    Citations:    Fields:    
  16. Li MD, Arun NT, Aggarwal M, Gupta S, Singh P, Little BP, Mendoza DP, Corradi GCA, Takahashi MS, Ferraciolli SF, Succi MD, Lang M, Bizzo BC, Dayan I, Kitamura FC, Kalpathy-Cramer J. Multi-population generalizability of a deep learning-based chest radiograph severity score for COVID-19. Medicine (Baltimore). 2022 Jul 22; 101(29):e29587. PMID: 35866818; PMCID: PMC9302282.
    Citations:    Fields:    Translation:Humans
  17. Chavva IR, Crawford AL, Mazurek MH, Yuen MM, Prabhat AM, Payabvash S, Sze G, Falcone GJ, Matouk CC, de Havenon A, Kim JA, Sharma R, Schiff SJ, Rosen MS, Kalpathy-Cramer J, Iglesias Gonzalez JE, Kimberly WT, Sheth KN. Deep Learning Applications for Acute Stroke Management. Ann Neurol. 2022 10; 92(4):574-587. PMID: 35689531.
    Citations: 1     Fields:    
  18. Cole ED, Park SH, Kim SJ, Kang KB, Valikodath NG, Al-Khaled T, Patel SN, Jonas KE, Ostmo S, Coyner A, Berrocal A, Drenser KA, Nagiel A, Horowitz JD, Lee TC, Kalpathy-Cramer J, Chiang MF, Campbell JP, Chan RVP. Variability in Plus Disease Diagnosis using Single and Serial Images. Ophthalmol Retina. 2022 12; 6(12):1122-1129. PMID: 35659941.
    Citations:    Fields:    
  19. Cole E, Valikodath NG, Al-Khaled T, Bajimaya S, Kc S, Chuluunbat T, Munkhuu B, Jonas KE, Chuluunkhuu C, MacKeen LD, Yap V, Hallak J, Ostmo S, Wu WC, Coyner AS, Singh P, Kalpathy-Cramer J, Chiang MF, Campbell JP, Chan RVP. Evaluation of an Artificial Intelligence System for Retinopathy of Prematurity Screening in Nepal and Mongolia. Ophthalmol Sci. 2022 Dec; 2(4):100165. PMID: 36531583; PMCID: PMC9754980.
    Citations: 1     
  20. Ardestani A, Li MD, Chea P, Wortman JR, Medina A, Kalpathy-Cramer J, Wald C. External COVID-19 Deep Learning Model Validation on ACR AI-LAB: It's a Brave New World. J Am Coll Radiol. 2022 07; 19(7):891-900. PMID: 35483438; PMCID: PMC8989698.
    Citations:    Fields:    Translation:Humans
  21. O'Shea A, Li MD, Mercaldo ND, Balthazar P, Som A, Yeung T, Succi MD, Little BP, Kalpathy-Cramer J, Lee SI. Intubation and mortality prediction in hospitalized COVID-19 patients using a combination of convolutional neural network-based scoring of chest radiographs and clinical data. BJR Open. 2022; 4(1):20210062. PMID: 36105420; PMCID: PMC9459864.
    Citations:    
  22. Cox M, Reid N, Panagides JC, Di Capua J, DeCarlo C, Dua A, Kalva S, Kalpathy-Cramer J, Daye D. Interpretable Machine Learning for the Prediction of Amputation Risk Following Lower Extremity Infrainguinal Endovascular Interventions for Peripheral Arterial Disease. Cardiovasc Intervent Radiol. 2022 May; 45(5):633-640. PMID: 35322303.
    Citations:    Fields:    Translation:Humans
  23. Hanif A, Lu C, Chang K, Singh P, Coyner AS, Brown JM, Ostmo S, Chan RVP, Rubin D, Chiang MF, Kalpathy-Cramer J, Campbell JP. Federated Learning for Multicenter Collaboration in Ophthalmology: Implications for Clinical Diagnosis and Disease Epidemiology. Ophthalmol Retina. 2022 08; 6(8):650-656. PMID: 35304305; PMCID: PMC9357070.
    Citations:    Fields:    
  24. Lu C, Hanif A, Singh P, Chang K, Coyner AS, Brown JM, Ostmo S, Chan RVP, Rubin D, Chiang MF, Campbell JP, Kalpathy-Cramer J. Federated Learning for Multicenter Collaboration in Ophthalmology: Improving Classification Performance in Retinopathy of Prematurity. Ophthalmol Retina. 2022 08; 6(8):657-663. PMID: 35296449.
    Citations:    Fields:    
  25. Campbell JP, Chiang MF, Chen JS, Moshfeghi DM, Nudleman E, Ruambivoonsuk P, Cherwek H, Cheung CY, Singh P, Kalpathy-Cramer J, Ostmo S, Eydelman M, Chan RVP, Capone A. Artificial Intelligence for Retinopathy of Prematurity: Validation of a Vascular Severity Scale against International Expert Diagnosis. Ophthalmology. 2022 07; 129(7):e69-e76. PMID: 35157950; PMCID: PMC9232863.
    Citations:    Fields:    Translation:Humans
  26. Coyner AS, Chen JS, Chang K, Singh P, Ostmo S, Chan RVP, Chiang MF, Kalpathy-Cramer J, Campbell JP. Synthetic Medical Images for Robust, Privacy-Preserving Training of Artificial Intelligence: Application to Retinopathy of Prematurity Diagnosis. Ophthalmol Sci. 2022 Jun; 2(2):100126. PMID: 36249693; PMCID: PMC9560638.
    Citations: 1     
  27. Hanif A, Yildiz I, Tian P, Kalkanli B, Erdogmus D, Ioannidis S, Dy J, Kalpathy-Cramer J, Ostmo S, Jonas K, Chan RVP, Chiang MF, Campbell JP. Improved Training Efficiency for Retinopathy of Prematurity Deep Learning Models Using Comparison versus Class Labels. Ophthalmol Sci. 2022 Jun; 2(2):100122. PMID: 36249702; PMCID: PMC9560533.
    Citations:    
  28. Peng J, Kim DD, Patel JB, Zeng X, Huang J, Chang K, Xun X, Zhang C, Sollee J, Wu J, Dalal DJ, Feng X, Zhou H, Zhu C, Zou B, Jin K, Wen PY, Boxerman JL, Warren KE, Poussaint TY, States LJ, Kalpathy-Cramer J, Yang L, Huang RY, Bai HX. Deep learning-based automatic tumor burden assessment of pediatric high-grade gliomas, medulloblastomas, and other leptomeningeal seeding tumors. Neuro Oncol. 2022 02 01; 24(2):289-299. PMID: 34174070; PMCID: PMC8804897.
    Citations: 1     Fields:    Translation:Humans
  29. Bridge CP, Best TD, Wrobel MM, Marquardt JP, Magudia K, Javidan C, Chung JH, Kalpathy-Cramer J, Andriole KP, Fintelmann FJ. A Fully Automated Deep Learning Pipeline for Multi-Vertebral Level Quantification and Characterization of Muscle and Adipose Tissue on Chest CT Scans. Radiol Artif Intell. 2022 Jan; 4(1):e210080. PMID: 35146434; PMCID: PMC8823460.
    Citations:    
  30. Coyner AS, Chen JS, Singh P, Schelonka RL, Jordan BK, McEvoy CT, Anderson JE, Chan RVP, Sonmez K, Erdogmus D, Chiang MF, Kalpathy-Cramer J, Campbell JP. Single-Examination Risk Prediction of Severe Retinopathy of Prematurity. Pediatrics. 2021 12 01; 148(6). PMID: 34814160; PMCID: PMC8919718.
    Citations: 1     Fields:    Translation:Humans
  31. Peng J, Kim DD, Patel JB, Zeng X, Huang J, Chang K, Xun X, Zhang C, Sollee J, Wu J, Dalal DJ, Feng X, Zhou H, Zhu C, Zou B, Jin K, Wen PY, Boxerman JL, Warren KE, Poussaint TY, States LJ, Kalpathy-Cramer J, Yang L, Huang RY, Bai HX. Corrigendum to: Deep learning-based automatic tumor burden assessment of pediatric high-grade gliomas, medulloblastomas, and other leptomeningeal seeding tumors. Neuro Oncol. 2021 Dec 01; 23(12):2124. PMID: 34551090; PMCID: PMC8643473.
    Citations:    Fields:    
  32. Balagurunathan Y, Beers A, Mcnitt-Gray M, Hadjiiski L, Napel S, Goldgof D, Perez G, Arbelaez P, Mehrtash A, Kapur T, Yang E, Moon JW, Perez GB, Delgado-Gonzalo R, Farhangi MM, Amini AA, Ni R, Feng X, Bagari A, Vaidhya K, Veasey B, Safta W, Frigui H, Enguehard J, Gholipour A, Castillo LS, Daza LA, Pinsky P, Kalpathy-Cramer J, Farahani K. Lung Nodule Malignancy Prediction in Sequential CT Scans: Summary of ISBI 2018 Challenge. IEEE Trans Med Imaging. 2021 12; 40(12):3748-3761. PMID: 34264825; PMCID: PMC9531053.
    Citations: 2     Fields:    Translation:Humans
  33. Chen JS, Coyner AS, Chan RVP, Hartnett ME, Moshfeghi DM, Owen LA, Kalpathy-Cramer J, Chiang MF, Campbell JP. Deepfakes in Ophthalmology: Applications and Realism of Synthetic Retinal Images from Generative Adversarial Networks. Ophthalmol Sci. 2021 Dec; 1(4):100079. PMID: 36246951; PMCID: PMC9562356.
    Citations: 2     
  34. Kalpathy-Cramer J, Patel JB, Bridge C, Chang K. Basic Artificial Intelligence Techniques: Evaluation of Artificial Intelligence Performance. Radiol Clin North Am. 2021 11; 59(6):941-954. PMID: 34689879.
    Citations:    Fields:    Translation:Humans
  35. Chen JS, Anderson JE, Coyner AS, Ostmo S, Sonmez K, Erdogmus D, Jordan BK, McEvoy CT, Dukhovny D, Schelonka RL, Paul Chan RV, Singh P, Kalpathy-Cramer J, Chiang MF, Campbell JP. Quantification of Early Neonatal Oxygen Exposure as a Risk Factor for Retinopathy of Prematurity Requiring Treatment. Ophthalmol Sci. 2021 Dec; 1(4):100070. PMID: 36275192; PMCID: PMC9562374.
    Citations:    
  36. Arun N, Gaw N, Singh P, Chang K, Aggarwal M, Chen B, Hoebel K, Gupta S, Patel J, Gidwani M, Adebayo J, Li MD, Kalpathy-Cramer J. Assessing the Trustworthiness of Saliency Maps for Localizing Abnormalities in Medical Imaging. Radiol Artif Intell. 2021 Nov; 3(6):e200267. PMID: 34870212; PMCID: PMC8637231.
    Citations: 8     
  37. Li MD, Chang K, Mei X, Bernheim A, Chung M, Steinberger S, Kalpathy-Cramer J, Little BP. Radiology Implementation Considerations for Artificial Intelligence (AI) Applied to COVID-19, From the AJR Special Series on AI Applications. AJR Am J Roentgenol. 2022 07; 219(1):15-23. PMID: 34612681.
    Citations: 1     Fields:    Translation:HumansPHPublic Health
  38. Morales MA, van den Boomen M, Nguyen C, Kalpathy-Cramer J, Rosen BR, Stultz CM, Izquierdo-Garcia D, Catana C. DeepStrain: A Deep Learning Workflow for the Automated Characterization of Cardiac Mechanics. Front Cardiovasc Med. 2021; 8:730316. PMID: 34540923; PMCID: PMC8446607.
    Citations: 2     
  39. Mongan J, Kalpathy-Cramer J, Flanders A, George Linguraru M. RSNA-MICCAI Panel Discussion: Machine Learning for Radiology from Challenges to Clinical Applications. Radiol Artif Intell. 2021 Sep; 3(5):e210118. PMID: 34617032.
    Citations: 1     
  40. Li MD, Wood PA, Alkasab TK, Lev MH, Kalpathy-Cramer J, Succi MD. Automated tracking of emergency department abdominal CT findings during the COVID-19 pandemic using natural language processing. Am J Emerg Med. 2021 Nov; 49:52-57. PMID: 34062318; PMCID: PMC8154187.
    Citations:    Fields:    Translation:HumansCells
  41. Li MD, Ahmed SR, Choy E, Lozano-Calderon SA, Kalpathy-Cramer J, Chang CY. Artificial intelligence applied to musculoskeletal oncology: a systematic review. Skeletal Radiol. 2022 Feb; 51(2):245-256. PMID: 34013447.
    Citations: 1     Fields:    Translation:Humans
  42. Petrick N, Akbar S, Cha KH, Nofech-Mozes S, Sahiner B, Gavrielides MA, Kalpathy-Cramer J, Drukker K, Martel AL. SPIE-AAPM-NCI BreastPathQ challenge: an image analysis challenge for quantitative tumor cellularity assessment in breast cancer histology images following neoadjuvant treatment. J Med Imaging (Bellingham). 2021 May; 8(3):034501. PMID: 33987451; PMCID: PMC8107263.
    Citations: 1     
  43. Talati P, El-Abtah M, Kim D, Dietrich J, Fu M, Wenke M, He J, Natheir SN, Vangel M, Rapalino O, Vaynrub A, Arrillaga-Romany I, Forst DA, Yen YF, Andronesi O, Kalpathy-Cramer J, Rosen B, Batchelor TT, Gonzalez RG, Gerstner ER, Ratai EM. MR spectroscopic imaging predicts early response to anti-angiogenic therapy in recurrent glioblastoma. Neurooncol Adv. 2021 Jan-Dec; 3(1):vdab060. PMID: 34131648; PMCID: PMC8193903.
    Citations: 2     
  44. Mukerji SS, Das S, Alabsi H, Brenner LN, Jain A, Magdamo C, Collens SI, Ye E, Keller K, Boutros CL, Leone MJ, Newhouse A, Foy B, Li MD, Lang M, Anahtar MN, Shao YP, Ge W, Sun H, Triant VA, Kalpathy-Cramer J, Higgins J, Rosand J, Robbins GK, Westover MB. Prolonged Intubation in Patients With Prior Cerebrovascular Disease and COVID-19. Front Neurol. 2021; 12:642912. PMID: 33897598.
    Citations: 3     
  45. Torrado-Carvajal A, Toschi N, Albrecht DS, Chang K, Akeju O, Kim M, Edwards RR, Zhang Y, Hooker JM, Duggento A, Kalpathy-Cramer J, Napadow V, Loggia ML. Thalamic neuroinflammation as a reproducible and discriminating signature for chronic low back pain. Pain. 2021 04 01; 162(4):1241-1249. PMID: 33065737; PMCID: PMC7969370.
    Citations: 9     Fields:    Translation:Humans
  46. Gibson LE, Fenza RD, Lang M, Capriles MI, Li MD, Kalpathy-Cramer J, Little BP, Arora P, Mueller AL, Ichinose F, Bittner EA, Berra L, G Chang M. Right Ventricular Strain Is Common in Intubated COVID-19 Patients and Does Not Reflect Severity of Respiratory Illness. J Intensive Care Med. 2021 Aug; 36(8):900-909. PMID: 33783269; PMCID: PMC8267080.
    Citations: 11     Fields:    Translation:Humans
  47. Campbell JP, Singh P, Redd TK, Brown JM, Shah PK, Subramanian P, Rajan R, Valikodath N, Cole E, Ostmo S, Chan RVP, Venkatapathy N, Chiang MF, Kalpathy-Cramer J. Applications of Artificial Intelligence for Retinopathy of Prematurity Screening. Pediatrics. 2021 03; 147(3). PMID: 33637645; PMCID: PMC7924138.
    Citations: 5     Fields:    Translation:Humans
  48. Robinson C, Trivedi A, Blazes M, Ortiz A, Desbiens J, Gupta S, Dodhia R, Bhatraju PK, Liles WC, Lee A, Kalpathy-Cramer J, Ferres JML. Deep learning models for COVID-19 chest x-ray classification: Preventing shortcut learning using feature disentanglement. medRxiv. 2021 Feb 13. PMID: 33594382; PMCID: PMC7885941.
    Citations:    
  49. Li MD, Deng F, Chang K, Kalpathy-Cramer J, Huang AJ. Automated Radiology-Arthroscopy Correlation of Knee Meniscal Tears Using Natural Language Processing Algorithms. Acad Radiol. 2022 04; 29(4):479-487. PMID: 33583713; PMCID: PMC8355247.
    Citations:    Fields:    Translation:Humans
  50. Chen JS, Coyner AS, Ostmo S, Sonmez K, Bajimaya S, Pradhan E, Valikodath N, Cole ED, Al-Khaled T, Chan RVP, Singh P, Kalpathy-Cramer J, Chiang MF, Campbell JP. Deep Learning for the Diagnosis of Stage in Retinopathy of Prematurity: Accuracy and Generalizability across Populations and Cameras. Ophthalmol Retina. 2021 10; 5(10):1027-1035. PMID: 33561545; PMCID: PMC8364291.
    Citations: 3     Fields:    Translation:Humans
  51. Lang M, Li MD, Jiang KZ, Yoon BC, Mendoza DP, Flores EJ, Rincon SP, Mehan WA, Conklin J, Huang SY, Lang AL, Giao DM, Leslie-Mazwi TM, Kalpathy-Cramer J, Little BP, Buch K. Severity of Chest Imaging is Correlated with Risk of Acute Neuroimaging Findings among Patients with COVID-19. AJNR Am J Neuroradiol. 2021 05; 42(5):831-837. PMID: 33541897; PMCID: PMC8115353.
    Citations: 2     Fields:    Translation:HumansCells
  52. Coyner AS, Chen J, Campbell JP, Ostmo S, Singh P, Kalpathy-Cramer J, Chiang MF. Diagnosability of Synthetic Retinal Fundus Images for Plus Disease Detection in Retinopathy of Prematurity. AMIA Annu Symp Proc. 2020; 2020:329-337. PMID: 33936405; PMCID: PMC8075515.
    Citations:    Fields:    Translation:Humans
  53. Colak E, Kitamura FC, Hobbs SB, Wu CC, Lungren MP, Prevedello LM, Kalpathy-Cramer J, Ball RL, Shih G, Stein A, Halabi SS, Altinmakas E, Law M, Kumar P, Manzalawi KA, Nelson Rubio DC, Sechrist JW, Germaine P, Lopez EC, Amerio T, Gupta P, Jain M, Kay FU, Lin CT, Sen S, Revels JW, Brussaard CC, Mongan J. The RSNA Pulmonary Embolism CT Dataset. Radiol Artif Intell. 2021 03; 3(2):e200254. PMID: 33937862; PMCID: PMC8043364.
    Citations: 7     
  54. Li MD, Little BP, Alkasab TK, Mendoza DP, Succi MD, Shepard JO, Lev MH, Kalpathy-Cramer J. Multi-Radiologist User Study for Artificial Intelligence-Guided Grading of COVID-19 Lung Disease Severity on Chest Radiographs. Acad Radiol. 2021 04; 28(4):572-576. PMID: 33485773.
    Citations: 1     Fields:    Translation:HumansCells
  55. Daye D, Tabari A, Kim H, Chang K, Kamran SC, Hong TS, Kalpathy-Cramer J, Gee MS. Quantitative tumor heterogeneity MRI profiling improves machine learning-based prognostication in patients with metastatic colon cancer. Eur Radiol. 2021 Aug; 31(8):5759-5767. PMID: 33454799.
    Citations: 3     Fields:    Translation:Humans
  56. Tsai EB, Simpson S, Lungren MP, Hershman M, Roshkovan L, Colak E, Erickson BJ, Shih G, Stein A, Kalpathy-Cramer J, Shen J, Hafez M, John S, Rajiah P, Pogatchnik BP, Mongan J, Altinmakas E, Ranschaert ER, Kitamura FC, Topff L, Moy L, Kanne JP, Wu CC. The RSNA International COVID-19 Open Radiology Database (RICORD). Radiology. 2021 04; 299(1):E204-E213. PMID: 33399506; PMCID: PMC7993245.
    Citations: 21     Fields:    Translation:HumansCells
  57. Sun H, Jain A, Leone MJ, Alabsi HS, Brenner LN, Ye E, Ge W, Shao YP, Boutros CL, Wang R, Tesh RA, Magdamo C, Collens SI, Ganglberger W, Bassett IV, Meigs JB, Kalpathy-Cramer J, Li MD, Chu JT, Dougan ML, Stratton LW, Rosand J, Fischl B, Das S, Mukerji SS, Robbins GK, Westover MB. CoVA: An Acuity Score for Outpatient Screening that Predicts Coronavirus Disease 2019 Prognosis. J Infect Dis. 2021 01 04; 223(1):38-46. PMID: 33098643; PMCID: PMC7665643.
    Citations: 19     Fields:    Translation:Humans
  58. Chung C, Kalpathy-Cramer J, Knopp MV, Jaffray DA. In the Era of Deep Learning, Why Reconstruct an Image at All? J Am Coll Radiol. 2021 Jan; 18(1 Pt B):170-173. PMID: 33413895.
    Citations: 2     Fields:    
  59. Beers A, Brown J, Chang K, Hoebel K, Patel J, Ly KI, Tolaney SM, Brastianos P, Rosen B, Gerstner ER, Kalpathy-Cramer J. DeepNeuro: an open-source deep learning toolbox for neuroimaging. Neuroinformatics. 2021 01; 19(1):127-140. PMID: 32578020.
    Citations: 4     Fields:    Translation:Humans
  60. Li MD, Lang M, Deng F, Chang K, Buch K, Rincon S, Mehan WA, Leslie-Mazwi TM, Kalpathy-Cramer J. Analysis of Stroke Detection during the COVID-19 Pandemic Using Natural Language Processing of Radiology Reports. AJNR Am J Neuroradiol. 2021 03; 42(3):429-434. PMID: 33334851; PMCID: PMC7959438.
    Citations: 5     Fields:    Translation:HumansCells
  61. Hoebel KV, Patel JB, Beers AL, Chang K, Singh P, Brown JM, Pinho MC, Batchelor TT, Gerstner ER, Rosen BR, Kalpathy-Cramer J. Radiomics Repeatability Pitfalls in a Scan-Rescan MRI Study of Glioblastoma. Radiol Artif Intell. 2021 Jan; 3(1):e190199. PMID: 33842889; PMCID: PMC7845781.
    Citations: 10     
  62. Kirby J, Prior F, Petrick N, Hadjiski L, Farahani K, Drukker K, Kalpathy-Cramer J, Glide-Hurst C, El Naqa I. Introduction to special issue on datasets hosted in The Cancer Imaging Archive (TCIA). Med Phys. 2020 Dec; 47(12):6026-6028. PMID: 33202038.
    Citations: 2     Fields:    Translation:Humans
  63. Gerstner ER, Emblem KE, Yen YF, Dietrich J, Jordan JT, Catana C, Wenchin KL, Hooker JM, Duda DG, Rosen BR, Kalpathy-Cramer J, Jain RK, Batchelor TT. Vascular dysfunction promotes regional hypoxia after bevacizumab therapy in recurrent glioblastoma patients. Neurooncol Adv. 2020 Jan-Dec; 2(1):vdaa157. PMID: 33392506; PMCID: PMC7764510.
    Citations: 4     
  64. Campbell JP, Kim SJ, Brown JM, Ostmo S, Chan RVP, Kalpathy-Cramer J, Chiang MF. Evaluation of a Deep Learning-Derived Quantitative Retinopathy of Prematurity Severity Scale. Ophthalmology. 2021 07; 128(7):1070-1076. PMID: 33121959; PMCID: PMC8076329.
    Citations: 11     Fields:    Translation:Humans
  65. Boxerman JL, Quarles CC, Hu LS, Erickson BJ, Gerstner ER, Smits M, Kaufmann TJ, Barboriak DP, Huang RH, Wick W, Weller M, Galanis E, Kalpathy-Cramer J, Shankar L, Jacobs P, Chung C, van den Bent MJ, Chang S, Al Yung WK, Cloughesy TF, Wen PY, Gilbert MR, Rosen BR, Ellingson BM, Schmainda KM. Consensus recommendations for a dynamic susceptibility contrast MRI protocol for use in high-grade gliomas. Neuro Oncol. 2020 09 29; 22(9):1262-1275. PMID: 32516388; PMCID: PMC7523451.
    Citations: 31     Fields:    Translation:Humans
  66. Li MD, Arun NT, Aggarwal M, Gupta S, Singh P, Little BP, Mendoza DP, Corradi GCA, Takahashi MS, Ferraciolli SF, Succi MD, Lang M, Bizzo BC, Dayan I, Kitamura FC, Kalpathy-Cramer J. Improvement and Multi-Population Generalizability of a Deep Learning-Based Chest Radiograph Severity Score for COVID-19. medRxiv. 2020 Sep 18. PMID: 32995811; PMCID: PMC7523150.
    Citations:    
  67. Zhang JL, Conlin CC, Li X, Layec G, Chang K, Kalpathy-Cramer J, Lee VS. Exercise-induced calf muscle hyperemia: Rapid mapping of magnetic resonance imaging using deep learning approach. Physiol Rep. 2020 08; 8(16):e14563. PMID: 32812401.
    Citations: 3     Fields:    Translation:Humans
  68. Balachandar N, Chang K, Kalpathy-Cramer J, Rubin DL. Corrigendum to: Accounting for data variability in multi-institutional distributed deep learning for medical imaging. J Am Med Inform Assoc. 2020 08 01; 27(8):1340. PMID: 32594122; PMCID: PMC7647326.
    Citations: 2     Fields:    
  69. Flanders AE, Prevedello LM, Shih G, Halabi SS, Kalpathy-Cramer J, Ball R, Mongan JT, Stein A, Kitamura FC, Lungren MP, Choudhary G, Cala L, Coelho L, Mogensen M, Morón F, Miller E, Ikuta I, Zohrabian V, McDonnell O, Lincoln C, Shah L, Joyner D, Agarwal A, Lee RK, Nath J. Erratum: Construction of a Machine Learning Dataset through Collaboration: The RSNA 2019 Brain CT Hemorrhage Challenge. Radiol Artif Intell. 2020 Jul; 2(4):e209002. PMID: 33939782; PMCID: PMC8082367.
    Citations: 3     
  70. Li MD, Arun NT, Gidwani M, Chang K, Deng F, Little BP, Mendoza DP, Lang M, Lee SI, O'Shea A, Parakh A, Singh P, Kalpathy-Cramer J. Automated Assessment and Tracking of COVID-19 Pulmonary Disease Severity on Chest Radiographs using Convolutional Siamese Neural Networks. Radiol Artif Intell. 2020 Jul; 2(4):e200079. PMID: 33928256; PMCID: PMC7392327.
    Citations: 27     
  71. Chang K, Beers AL, Brink L, Patel JB, Singh P, Arun NT, Hoebel KV, Gaw N, Shah M, Pisano ED, Tilkin M, Coombs LP, Dreyer KJ, Allen B, Agarwal S, Kalpathy-Cramer J. Multi-Institutional Assessment and Crowdsourcing Evaluation of Deep Learning for Automated Classification of Breast Density. J Am Coll Radiol. 2020 Dec; 17(12):1653-1662. PMID: 32592660.
    Citations: 7     Fields:    Translation:Humans
  72. Sun H, Jain A, Leone MJ, Alabsi HS, Brenner LN, Ye E, Ge W, Shao YP, Boutros CL, Wang R, Tesh RA, Magdamo C, Collens SI, Ganglberger W, Bassett IV, Meigs JB, Kalpathy-Cramer J, Li MD, Chu JT, Dougan M, Stratton L, Rosand J, Fischl B, Das S, Mukerji SS, Robbins GK, Westover MB. COVID-19 Outpatient Screening: a Prediction Score for Adverse Events. medRxiv. 2020 Jun 22. PMID: 32607523.
    Citations:    
  73. Cardenas CE, Mohamed ASR, Yang J, Gooding M, Veeraraghavan H, Kalpathy-Cramer J, Ng SP, Ding Y, Wang J, Lai SY, Fuller CD, Sharp G. Head and neck cancer patient images for determining auto-segmentation accuracy in T2-weighted magnetic resonance imaging through expert manual segmentations. Med Phys. 2020 Jun; 47(5):2317-2322. PMID: 32418343; PMCID: PMC7322982.
    Citations: 1     Fields:    Translation:Humans
  74. McNitt-Gray M, Napel S, Jaggi A, Mattonen SA, Hadjiiski L, Muzi M, Goldgof D, Balagurunathan Y, Pierce LA, Kinahan PE, Jones EF, Nguyen A, Virkud A, Chan HP, Emaminejad N, Wahi-Anwar M, Daly M, Abdalah M, Yang H, Lu L, Lv W, Rahmim A, Gastounioti A, Pati S, Bakas S, Kontos D, Zhao B, Kalpathy-Cramer J, Farahani K. Standardization in Quantitative Imaging: A Multicenter Comparison of Radiomic Features from Different Software Packages on Digital Reference Objects and Patient Data Sets. Tomography. 2020 06; 6(2):118-128. PMID: 32548288.
    Citations: 21     Fields:    Translation:Humans
  75. Bell LC, Semmineh N, An H, Eldeniz C, Wahl R, Schmainda KM, Prah MA, Erickson BJ, Korfiatis P, Wu C, Sorace AG, Yankeelov TE, Rutledge N, Chenevert TL, Malyarenko D, Liu Y, Brenner A, Hu LS, Zhou Y, Boxerman JL, Yen YF, Kalpathy-Cramer J, Beers AL, Muzi M, Madhuranthakam AJ, Pinho M, Johnson B, Quarles CC. Evaluating the Use of rCBV as a Tumor Grade and Treatment Response Classifier Across NCI Quantitative Imaging Network Sites: Part II of the DSC-MRI Digital Reference Object (DRO) Challenge. Tomography. 2020 06; 6(2):203-208. PMID: 32548297.
    Citations: 3     Fields:    Translation:Humans
  76. Li MD, Arun NT, Gidwani M, Chang K, Deng F, Little BP, Mendoza DP, Lang M, Lee SI, O'Shea A, Parakh A, Singh P, Kalpathy-Cramer J. Automated assessment of COVID-19 pulmonary disease severity on chest radiographs using convolutional Siamese neural networks. medRxiv. 2020 May 26. PMID: 32511570; PMCID: PMC7274251.
    Citations:    
  77. Choi RY, Brown JM, Kalpathy-Cramer J, Chan RVP, Ostmo S, Chiang MF, Campbell JP. Variability in Plus Disease Identified Using a Deep Learning-Based Retinopathy of Prematurity Severity Scale. Ophthalmol Retina. 2020 10; 4(10):1016-1021. PMID: 32380115.
    Citations: 3     Fields:    Translation:Humans
  78. Fedorov A, Beichel R, Kalpathy-Cramer J, Clunie D, Onken M, Riesmeier J, Herz C, Bauer C, Beers A, Fillion-Robin JC, Lasso A, Pinter C, Pieper S, Nolden M, Maier-Hein K, Herrmann MD, Saltz J, Prior F, Fennessy F, Buatti J, Kikinis R. Quantitative Imaging Informatics for Cancer Research. JCO Clin Cancer Inform. 2020 05; 4:444-453. PMID: 32392097.
    Citations: 6     Fields:    Translation:Humans
  79. Balachandar N, Chang K, Kalpathy-Cramer J, Rubin DL. Accounting for data variability in multi-institutional distributed deep learning for medical imaging. J Am Med Inform Assoc. 2020 05 01; 27(5):700-708. PMID: 32196092.
    Citations: 5     Fields:    Translation:Humans
  80. Flanders AE, Prevedello LM, Shih G, Halabi SS, Kalpathy-Cramer J, Ball R, Mongan JT, Stein A, Kitamura FC, Lungren MP, Choudhary G, Cala L, Coelho L, Mogensen M, Morón F, Miller E, Ikuta I, Zohrabian V, McDonnell O, Lincoln C, Shah L, Joyner D, Agarwal A, Lee RK, Nath J. Construction of a Machine Learning Dataset through Collaboration: The RSNA 2019 Brain CT Hemorrhage Challenge. Radiol Artif Intell. 2020 05; 2(3):e190211. PMID: 33937827; PMCID: PMC8082297.
    Citations: 12     
  81. Greenwald MF, Danford ID, Shahrawat M, Ostmo S, Brown J, Kalpathy-Cramer J, Bradshaw K, Schelonka R, Cohen HS, Chan RVP, Chiang MF, Campbell JP. Evaluation of artificial intelligence-based telemedicine screening for retinopathy of prematurity. J AAPOS. 2020 06; 24(3):160-162. PMID: 32289490.
    Citations: 9     Fields:    Translation:HumansPHPublic Health
  82. Li MD, Chang K, Bearce B, Chang CY, Huang AJ, Campbell JP, Brown JM, Singh P, Hoebel KV, Erdogmus D, Ioannidis S, Palmer WE, Chiang MF, Kalpathy-Cramer J. Siamese neural networks for continuous disease severity evaluation and change detection in medical imaging. NPJ Digit Med. 2020; 3:48. PMID: 32258430.
    Citations: 8     
  83. Choi RY, Coyner AS, Kalpathy-Cramer J, Chiang MF, Campbell JP. Introduction to Machine Learning, Neural Networks, and Deep Learning. Transl Vis Sci Technol. 2020 02 27; 9(2):14. PMID: 32704420.
    Citations: 28     Fields:    
  84. Kurc T, Bakas S, Ren X, Bagari A, Momeni A, Huang Y, Zhang L, Kumar A, Thibault M, Qi Q, Wang Q, Kori A, Gevaert O, Zhang Y, Shen D, Khened M, Ding X, Krishnamurthi G, Kalpathy-Cramer J, Davis J, Zhao T, Gupta R, Saltz J, Farahani K. Segmentation and Classification in Digital Pathology for Glioma Research: Challenges and Deep Learning Approaches. Front Neurosci. 2020; 14:27. PMID: 32153349; PMCID: PMC7046596.
    Citations: 11     
  85. Yildiz VM, Tian P, Yildiz I, Brown JM, Kalpathy-Cramer J, Dy J, Ioannidis S, Erdogmus D, Ostmo S, Kim SJ, Chan RVP, Campbell JP, Chiang MF. Plus Disease in Retinopathy of Prematurity: Convolutional Neural Network Performance Using a Combined Neural Network and Feature Extraction Approach. Transl Vis Sci Technol. 2020 02 14; 9(2):10. PMID: 32704416.
    Citations: 4     Fields:    Translation:Humans
  86. Scruggs BA, Chan RVP, Kalpathy-Cramer J, Chiang MF, Campbell JP. Artificial Intelligence in Retinopathy of Prematurity Diagnosis. Transl Vis Sci Technol. 2020 02 10; 9(2):5. PMID: 32704411.
    Citations: 14     Fields:    Translation:Humans
  87. Bellsmith KN, Brown J, Kim SJ, Goldstein IH, Coyner A, Ostmo S, Gupta K, Chan RVP, Kalpathy-Cramer J, Chiang MF, Campbell JP. Aggressive Posterior Retinopathy of Prematurity: Clinical and Quantitative Imaging Features in a Large North American Cohort. Ophthalmology. 2020 08; 127(8):1105-1112. PMID: 32197913.
    Citations: 9     Fields:    Translation:Humans
  88. Pan I, Thodberg HH, Halabi SS, Kalpathy-Cramer J, Larson DB. Improving Automated Pediatric Bone Age Estimation Using Ensembles of Models from the 2017 RSNA Machine Learning Challenge. Radiol Artif Intell. 2019 Nov 20; 1(6):e190053. PMID: 32090207; PMCID: PMC6884060.
    Citations: 12     
  89. Chang K, Beers AL, Bai HX, Brown JM, Ly KI, Li X, Senders JT, Kavouridis VK, Boaro A, Su C, Bi WL, Rapalino O, Liao W, Shen Q, Zhou H, Xiao B, Wang Y, Zhang PJ, Pinho MC, Wen PY, Batchelor TT, Boxerman JL, Arnaout O, Rosen BR, Gerstner ER, Yang L, Huang RY, Kalpathy-Cramer J. Automatic assessment of glioma burden: a deep learning algorithm for fully automated volumetric and bidimensional measurement. Neuro Oncol. 2019 11 04; 21(11):1412-1422. PMID: 31190077; PMCID: PMC6827825.
    Citations: 45     Fields:    Translation:Humans
  90. Gerstner ER, Emblem KE, Chang K, Vakulenko-Lagun B, Yen YF, Beers AL, Dietrich J, Plotkin SR, Catana C, Hooker JM, Duda DG, Rosen B, Kalpathy-Cramer J, Jain RK, Batchelor T. Bevacizumab Reduces Permeability and Concurrent Temozolomide Delivery in a Subset of Patients with Recurrent Glioblastoma. Clin Cancer Res. 2020 01 01; 26(1):206-212. PMID: 31558474.
    Citations: 18     Fields:    Translation:Humans
  91. Morales MA, Izquierdo-Garcia D, Aganj I, Kalpathy-Cramer J, Rosen BR, Catana C. Implementation and Validation of a Three-dimensional Cardiac Motion Estimation Network. Radiol Artif Intell. 2019 Jul 17; 1(4):e180080. PMID: 32076659; PMCID: PMC6677286.
    Citations: 4     
  92. Silva MA, Patel J, Kavouridis V, Gallerani T, Beers A, Chang K, Hoebel KV, Brown J, See AP, Gormley WB, Aziz-Sultan MA, Kalpathy-Cramer J, Arnaout O, Patel NJ. Machine Learning Models can Detect Aneurysm Rupture and Identify Clinical Features Associated with Rupture. World Neurosurg. 2019 Nov; 131:e46-e51. PMID: 31295616.
    Citations: 14     Fields:    Translation:Humans
  93. Taylor S, Brown JM, Gupta K, Campbell JP, Ostmo S, Chan RVP, Dy J, Erdogmus D, Ioannidis S, Kim SJ, Kalpathy-Cramer J, Chiang MF. Monitoring Disease Progression With a Quantitative Severity Scale for Retinopathy of Prematurity Using Deep Learning. JAMA Ophthalmol. 2019 Jul 03. PMID: 31268518; PMCID: PMC6613341.
    Citations: 21     Fields:    
  94. Gupta K, Campbell JP, Taylor S, Brown JM, Ostmo S, Chan RVP, Dy J, Erdogmus D, Ioannidis S, Kalpathy-Cramer J, Kim SJ, Chiang MF. A Quantitative Severity Scale for Retinopathy of Prematurity Using Deep Learning to Monitor Disease Regression After Treatment. JAMA Ophthalmol. 2019 Jul 03. PMID: 31268499; PMCID: PMC6613298.
    Citations: 16     Fields:    
  95. Yildiz I, Tian P, Dy J, Erdogmus D, Brown J, Kalpathy-Cramer J, Ostmo S, Peter Campbell J, Chiang MF, Ioannidis S. Classification and comparison via neural networks. Neural Netw. 2019 Oct; 118:65-80. PMID: 31254769.
    Citations: 1     Fields:    
  96. Ly KI, Vakulenko-Lagun B, Emblem KE, Ou Y, Da X, Betensky RA, Kalpathy-Cramer J, Duda DG, Jain RK, Chi AS, Plotkin SR, Batchelor TT, Sorensen G, Rosen BR, Gerstner ER. Publisher Correction: Probing tumor microenvironment in patients with newly diagnosed glioblastoma during chemoradiation and adjuvant temozolomide with functional MRI. Sci Rep. 2019 Jun 14; 9(1):8721. PMID: 31197238.
    Citations:    Fields:    
  97. Choudhery S, Chou SS, Chang K, Kalpathy-Cramer J, Lehman CD. Kinetic Analysis of Lesions Identified on a Rapid Abridged Multiphase (RAMP) Breast MRI Protocol. Acad Radiol. 2020 05; 27(5):672-681. PMID: 31147233.
    Citations: 2     Fields:    Translation:Humans
  98. Allen B, Agarwal S, Kalpathy-Cramer J, Dreyer K. Democratizing AI. J Am Coll Radiol. 2019 Jul; 16(7):961-963. PMID: 31272590.
    Citations: 5     Fields:    Translation:HumansPHPublic Health
  99. Langlotz CP, Allen B, Erickson BJ, Kalpathy-Cramer J, Bigelow K, Cook TS, Flanders AE, Lungren MP, Mendelson DS, Rudie JD, Wang G, Kandarpa K. A Roadmap for Foundational Research on Artificial Intelligence in Medical Imaging: From the 2018 NIH/RSNA/ACR/The Academy Workshop. Radiology. 2019 06; 291(3):781-791. PMID: 30990384; PMCID: PMC6542624.
    Citations: 60     Fields:    Translation:Humans
  100. Vu QD, Graham S, Kurc T, To MNN, Shaban M, Qaiser T, Koohbanani NA, Khurram SA, Kalpathy-Cramer J, Zhao T, Gupta R, Kwak JT, Rajpoot N, Saltz J, Farahani K. Methods for Segmentation and Classification of Digital Microscopy Tissue Images. Front Bioeng Biotechnol. 2019; 7:53. PMID: 31001524; PMCID: PMC6454006.
    Citations: 27     
  101. Bell LC, Semmineh N, An H, Eldeniz C, Wahl R, Schmainda KM, Prah MA, Erickson BJ, Korfiatis P, Wu C, Sorace AG, Yankeelov TE, Rutledge N, Chenevert TL, Malyarenko D, Liu Y, Brenner A, Hu LS, Zhou Y, Boxerman JL, Yen YF, Kalpathy-Cramer J, Beers AL, Muzi M, Madhuranthakam AJ, Pinho M, Johnson B, Quarles CC. Evaluating Multisite rCBV Consistency from DSC-MRI Imaging Protocols and Postprocessing Software Across the NCI Quantitative Imaging Network Sites Using a Digital Reference Object (DRO). Tomography. 2019 03; 5(1):110-117. PMID: 30854448; PMCID: PMC6403027.
    Citations: 12     Fields:    Translation:Humans
  102. Huang W, Chen Y, Fedorov A, Li X, Jajamovich GH, Malyarenko DI, Aryal MP, LaViolette PS, Oborski MJ, O'Sullivan F, Abramson RG, Jafari-Khouzani K, Afzal A, Tudorica A, Moloney B, Gupta SN, Besa C, Kalpathy-Cramer J, Mountz JM, Laymon CM, Muzi M, Kinahan PE, Schmainda K, Cao Y, Chenevert TL, Taouli B, Yankeelov TE, Fennessy F, Li X. The Impact of Arterial Input Function Determination Variations on Prostate Dynamic Contrast-Enhanced Magnetic Resonance Imaging Pharmacokinetic Modeling: A Multicenter Data Analysis Challenge, Part II. Tomography. 2019 03; 5(1):99-109. PMID: 30854447; PMCID: PMC6403046.
    Citations: 5     Fields:    Translation:Humans
  103. Coyner AS, Swan R, Campbell JP, Ostmo S, Brown JM, Kalpathy-Cramer J, Kim SJ, Jonas KE, Chan RVP, Chiang MF. Automated Fundus Image Quality Assessment in Retinopathy of Prematurity Using Deep Convolutional Neural Networks. Ophthalmol Retina. 2019 05; 3(5):444-450. PMID: 31044738.
    Citations: 15     Fields:    Translation:Humans
  104. Prevedello LM, Halabi SS, Shih G, Wu CC, Kohli MD, Chokshi FH, Erickson BJ, Kalpathy-Cramer J, Andriole KP, Flanders AE. Challenges Related to Artificial Intelligence Research in Medical Imaging and the Importance of Image Analysis Competitions. Radiol Artif Intell. 2019 Jan; 1(1):e180031. PMID: 33937783.
    Citations: 14     
  105. Elhalawani H, Elgohari B, Lin TA, Mohamed ASR, Fitzgerald TJ, Laurie F, Ulin K, Kalpathy-Cramer J, Guerrero T, Holliday EB, Russo G, Patel A, Jones W, Walker GV, Awan M, Choi M, Dagan R, Mahmoud O, Shapiro A, Kong FS, Gomez D, Zeng J, Decker R, Spoelstra FOB, Gaspar LE, Kachnic LA, Thomas CR, Okunieff P, Fuller CD. An in-silico quality assurance study of contouring target volumes in thoracic tumors within a cooperative group setting. Clin Transl Radiat Oncol. 2019 Feb; 15:83-92. PMID: 30775563; PMCID: PMC6365802.
    Citations:    
  106. Coyner AS, Swan R, Brown JM, Kalpathy-Cramer J, Kim SJ, Campbell JP, Jonas KE, Ostmo S, Chan RVP, Chiang MF. Deep Learning for Image Quality Assessment of Fundus Images in Retinopathy of Prematurity. AMIA Annu Symp Proc. 2018; 2018:1224-1232. PMID: 30815164; PMCID: PMC6371336.
    Citations: 9     Fields:    Translation:Humans
  107. Halabi SS, Prevedello LM, Kalpathy-Cramer J, Mamonov AB, Bilbily A, Cicero M, Pan I, Pereira LA, Sousa RT, Abdala N, Kitamura FC, Thodberg HH, Chen L, Shih G, Andriole K, Kohli MD, Erickson BJ, Flanders AE. The RSNA Pediatric Bone Age Machine Learning Challenge. Radiology. 2019 02; 290(2):498-503. PMID: 30480490; PMCID: PMC6358027.
    Citations: 51     Fields:    Translation:Humans
  108. Redd TK, Campbell JP, Brown JM, Kim SJ, Ostmo S, Chan RVP, Dy J, Erdogmus D, Ioannidis S, Kalpathy-Cramer J, Chiang MF. Evaluation of a deep learning image assessment system for detecting severe retinopathy of prematurity. Br J Ophthalmol. 2018 Nov 23. PMID: 30470715.
    Citations: 34     Fields:    
  109. Ly KI, Vakulenko-Lagun B, Emblem KE, Ou Y, Da X, Betensky RA, Kalpathy-Cramer J, Duda DG, Jain RK, Chi AS, Plotkin SR, Batchelor TT, Sorensen G, Rosen BR, Gerstner ER. Probing tumor microenvironment in patients with newly diagnosed glioblastoma during chemoradiation and adjuvant temozolomide with functional MRI. Sci Rep. 2018 11 20; 8(1):17062. PMID: 30459364.
    Citations: 8     Fields:    Translation:Humans
  110. Armato SG, Huisman H, Drukker K, Hadjiiski L, Kirby JS, Petrick N, Redmond G, Giger ML, Cha K, Mamonov A, Kalpathy-Cramer J, Farahani K. PROSTATEx Challenges for computerized classification of prostate lesions from multiparametric magnetic resonance images. J Med Imaging (Bellingham). 2018 Oct; 5(4):044501. PMID: 30840739.
    Citations: 24     
  111. Lee A, Taylor P, Kalpathy-Cramer J, Tufail A. Reply. Ophthalmology. 2018 12; 125(12):e86. PMID: 30343936.
    Citations:    Fields:    
  112. Ou Y, Zöllei L, Da X, Retzepi K, Murphy SN, Gerstner ER, Rosen BR, Grant PE, Kalpathy-Cramer J, Gollub RL. Field of View Normalization in Multi-Site Brain MRI. Neuroinformatics. 2018 10; 16(3-4):431-444. PMID: 29353341.
    Citations: 8     Fields:    Translation:Humans
  113. Winzeck S, Hakim A, McKinley R, Pinto JAADSR, Alves V, Silva C, Pisov M, Krivov E, Belyaev M, Monteiro M, Oliveira A, Choi Y, Paik MC, Kwon Y, Lee H, Kim BJ, Won JH, Islam M, Ren H, Robben D, Suetens P, Gong E, Niu Y, Xu J, Pauly JM, Lucas C, Heinrich MP, Rivera LC, Castillo LS, Daza LA, Beers AL, Arbelaezs P, Maier O, Chang K, Brown JM, Kalpathy-Cramer J, Zaharchuk G, Wiest R, Reyes M. ISLES 2016 and 2017-Benchmarking Ischemic Stroke Lesion Outcome Prediction Based on Multispectral MRI. Front Neurol. 2018; 9:679. PMID: 30271370; PMCID: PMC6146088.
    Citations: 28     
  114. Robins M, Kalpathy-Cramer J, Obuchowski NA, Buckler A, Athelogou M, Jarecha R, Petrick N, Pezeshk A, Sahiner B, Samei E. Evaluation of Simulated Lesions as Surrogates to Clinical Lesions for Thoracic CT Volumetry: The Results of an International Challenge. Acad Radiol. 2019 07; 26(7):e161-e173. PMID: 30219290.
    Citations:    Fields:    Translation:Humans
  115. Ng SP, Dyer BA, Kalpathy-Cramer J, Mohamed ASR, Awan MJ, Gunn GB, Phan J, Zafereo M, Debnam JM, Lewis CM, Colen RR, Kupferman ME, Guha-Thakurta N, Canahuate G, Marai GE, Vock D, Hamilton B, Holland J, Cardenas CE, Lai S, Rosenthal D, Fuller CD. A prospective in silico analysis of interdisciplinary and interobserver spatial variability in post-operative target delineation of high-risk oral cavity cancers: Does physician specialty matter? Clin Transl Radiat Oncol. 2018 Aug; 12:40-46. PMID: 30148217; PMCID: PMC6105928.
    Citations: 5     
  116. Chang K, Balachandar N, Lam C, Yi D, Brown J, Beers A, Rosen B, Rubin DL, Kalpathy-Cramer J. Distributed deep learning networks among institutions for medical imaging. J Am Med Inform Assoc. 2018 08 01; 25(8):945-954. PMID: 29617797; PMCID: PMC6077811.
    Citations: 56     Fields:    Translation:Humans
  117. Brown JM, Campbell JP, Beers A, Chang K, Ostmo S, Chan RVP, Dy J, Erdogmus D, Ioannidis S, Kalpathy-Cramer J, Chiang MF. Automated Diagnosis of Plus Disease in Retinopathy of Prematurity Using Deep Convolutional Neural Networks. JAMA Ophthalmol. 2018 07 01; 136(7):803-810. PMID: 29801159; PMCID: PMC6136045.
    Citations: 114     Fields:    Translation:Humans
  118. Kim SJ, Campbell JP, Kalpathy-Cramer J, Ostmo S, Jonas KE, Choi D, Chan RVP, Chiang MF. Accuracy and Reliability of Eye-Based vs Quadrant-Based Diagnosis of Plus Disease in Retinopathy of Prematurity. JAMA Ophthalmol. 2018 06 01; 136(6):648-655. PMID: 29710185; PMCID: PMC6145779.
    Citations: 6     Fields:    Translation:Humans
  119. Schmainda KM, Prah MA, Rand SD, Liu Y, Logan B, Muzi M, Rane SD, Da X, Yen YF, Kalpathy-Cramer J, Chenevert TL, Hoff B, Ross B, Cao Y, Aryal MP, Erickson B, Korfiatis P, Dondlinger T, Bell L, Hu L, Kinahan PE, Quarles CC. Multisite Concordance of DSC-MRI Analysis for Brain Tumors: Results of a National Cancer Institute Quantitative Imaging Network Collaborative Project. AJNR Am J Neuroradiol. 2018 06; 39(6):1008-1016. PMID: 29794239.
    Citations: 16     Fields:    Translation:Humans
  120. Balagurunathan Y, Beers A, Kalpathy-Cramer J, McNitt-Gray M, Hadjiiski L, Zhao B, Zhu J, Yang H, Yip SSF, Aerts HJWL, Napel S, Cherezov D, Cha K, Chan HP, Flores C, Garcia A, Gillies R, Goldgof D. Erratum: Semi-automated pulmonary nodule interval segmentation using the NLST data. Med Phys. 2018 Jun; 45(6):2689-2690. PMID: 29894564.
    Citations: 1     Fields:    
  121. Balagurunathan Y, Beers A, Kalpathy-Cramer J, McNitt-Gray M, Hadjiiski L, Zhao B, Zhu J, Yang H, Yip SSF, Aerts HJWL, Napel S, Cherezov D, Cha K, Chan HP, Flores C, Garcia A, Gillies R, Goldgof D. Semi-automated pulmonary nodule interval segmentation using the NLST data. Med Phys. 2018 Mar; 45(3):1093-1107. PMID: 29363773; PMCID: PMC5952359.
    Citations: 8     Fields:    Translation:HumansPHPublic Health
  122. Prust ML, Jafari-Khouzani K, Kalpathy-Cramer J, Polaskova P, Batchelor TT, Gerstner ER, Dietrich J. Standard chemoradiation in combination with VEGF targeted therapy for glioblastoma results in progressive gray and white matter volume loss. Neuro Oncol. 2018 01 22; 20(2):289-291. PMID: 29315410; PMCID: PMC5777497.
    Citations: 3     Fields:    Translation:Humans
  123. Lee A, Taylor P, Kalpathy-Cramer J, Tufail A. Machine Learning Has Arrived! Ophthalmology. 2017 12; 124(12):1726-1728. PMID: 29157423.
    Citations: 31     Fields:    Translation:Humans
  124. Lauer A, Da X, Hansen MB, Boulouis G, Ou Y, Cai X, Liberato Celso Pedrotti A, Kalpathy-Cramer J, Caruso P, Hayden DL, Rost N, Mouridsen K, Eichler FS, Rosen B, Musolino PL. ABCD1 dysfunction alters white matter microvascular perfusion. Brain. 2017 Dec 01; 140(12):3139-3152. PMID: 29136088; PMCID: PMC5841142.
    Citations: 7     Fields:    Translation:Humans
  125. Shazeeb MS, Kalpathy-Cramer J, Issa B. MRI Simulation Study Investigating Effects of Vessel Topology, Diffusion, and Susceptibility on Transverse Relaxation Rates Using a Cylinder Fork Model. Sci Rep. 2017 11 24; 7(1):16223. PMID: 29176647.
    Citations: 1     Fields:    Translation:HumansCells
  126. Chang K, Bai HX, Zhou H, Su C, Bi WL, Agbodza E, Kavouridis VK, Senders JT, Boaro A, Beers A, Zhang B, Capellini A, Liao W, Shen Q, Li X, Xiao B, Cryan J, Ramkissoon S, Ramkissoon L, Ligon K, Wen PY, Bindra RS, Woo J, Arnaout O, Gerstner ER, Zhang PJ, Rosen BR, Yang L, Huang RY, Kalpathy-Cramer J. Residual Convolutional Neural Network for the Determination of IDH Status in Low- and High-Grade Gliomas from MR Imaging. Clin Cancer Res. 2018 03 01; 24(5):1073-1081. PMID: 29167275; PMCID: PMC6051535.
    Citations: 107     Fields:    Translation:Humans
  127. Farrar CT, Gale EM, Kennan R, Ramsay I, Masia R, Arora G, Looby K, Wei L, Kalpathy-Cramer J, Bunzel MM, Zhang C, Zhu Y, Akiyama TE, Klimas M, Pinto S, Diyabalanage H, Tanabe KK, Humblet V, Fuchs BC, Caravan P. CM-101: Type I Collagen-targeted MR Imaging Probe for Detection of Liver Fibrosis. Radiology. 2018 05; 287(2):581-589. PMID: 29156148; PMCID: PMC5929363.
    Citations: 20     Fields:    Translation:Animals
  128. Newitt DC, Malyarenko D, Chenevert TL, Quarles CC, Bell L, Fedorov A, Fennessy F, Jacobs MA, Solaiyappan M, Hectors S, Taouli B, Muzi M, Kinahan PE, Schmainda KM, Prah MA, Taber EN, Kroenke C, Huang W, Arlinghaus LR, Yankeelov TE, Cao Y, Aryal M, Yen YF, Kalpathy-Cramer J, Shukla-Dave A, Fung M, Liang J, Boss M, Hylton N. Multisite concordance of apparent diffusion coefficient measurements across the NCI Quantitative Imaging Network. J Med Imaging (Bellingham). 2018 Jan; 5(1):011003. PMID: 29021993; PMCID: PMC5633866.
    Citations: 15     
  129. Zhou M, Scott J, Chaudhury B, Hall L, Goldgof D, Yeom KW, Iv M, Ou Y, Kalpathy-Cramer J, Napel S, Gillies R, Gevaert O, Gatenby R. Radiomics in Brain Tumor: Image Assessment, Quantitative Feature Descriptors, and Machine-Learning Approaches. AJNR Am J Neuroradiol. 2018 02; 39(2):208-216. PMID: 28982791.
    Citations: 99     Fields:    Translation:Humans
  130. Bane O, Hectors SJ, Wagner M, Arlinghaus LL, Aryal MP, Cao Y, Chenevert TL, Fennessy F, Huang W, Hylton NM, Kalpathy-Cramer J, Keenan KE, Malyarenko DI, Mulkern RV, Newitt DC, Russek SE, Stupic KF, Tudorica A, Wilmes LJ, Yankeelov TE, Yen YF, Boss MA, Taouli B. Accuracy, repeatability, and interplatform reproducibility of T1 quantification methods used for DCE-MRI: Results from a multicenter phantom study. Magn Reson Med. 2018 05; 79(5):2564-2575. PMID: 28913930; PMCID: PMC5821553.
    Citations: 32     Fields:    Translation:Humans
  131. A Multi-Institutional Comparison of Dynamic Contrast-Enhanced Magnetic Resonance Imaging Parameter Calculations. Sci Rep. 2017 09 11; 7(1):11185. PMID: 28894197.
    Citations: 9     Fields:    Translation:Humans
  132. Saltz J, Almeida J, Gao Y, Sharma A, Bremer E, DiPrima T, Saltz M, Kalpathy-Cramer J, Kurc T. Towards Generation, Management, and Exploration of Combined Radiomics and Pathomics Datasets for Cancer Research. AMIA Jt Summits Transl Sci Proc. 2017; 2017:85-94. PMID: 28815113; PMCID: PMC5543366.
    Citations: 20     
  133. Moleta C, Campbell JP, Kalpathy-Cramer J, Chan RVP, Ostmo S, Jonas K, Chiang MF. Plus Disease in Retinopathy of Prematurity: Diagnostic Trends in 2016 Versus 2007. Am J Ophthalmol. 2017 Apr; 176:70-76. PMID: 28087400; PMCID: PMC5376516.
    Citations: 6     Fields:    Translation:Humans
  134. Farahani K, Kalpathy-Cramer J, Chenevert TL, Rubin DL, Sunderland JJ, Nordstrom RJ, Buatti J, Hylton N. Computational Challenges and Collaborative Projects in the NCI Quantitative Imaging Network. Tomography. 2016 Dec; 2(4):242-249. PMID: 28798963; PMCID: PMC5548142.
    Citations: 7     Fields:    
  135. Kalpathy-Cramer J, Mamomov A, Zhao B, Lu L, Cherezov D, Napel S, Echegaray S, Rubin D, McNitt-Gray M, Lo P, Sieren JC, Uthoff J, Dilger SK, Driscoll B, Yeung I, Hadjiiski L, Cha K, Balagurunathan Y, Gillies R, Goldgof D. Radiomics of Lung Nodules: A Multi-Institutional Study of Robustness and Agreement of Quantitative Imaging Features. Tomography. 2016 Dec; 2(4):430-437. PMID: 28149958; PMCID: PMC5279995.
    Citations: 59     Fields:    
  136. Hansen MB, Tietze A, Kalpathy-Cramer J, Gerstner ER, Batchelor TT, Østergaard L, Mouridsen K. Reliable estimation of microvascular flow patterns in patients with disrupted blood-brain barrier using dynamic susceptibility contrast MRI. J Magn Reson Imaging. 2017 08; 46(2):537-549. PMID: 27902858.
    Citations: 5     Fields:    Translation:Humans
  137. Kalpathy-Cramer J, Chandra V, Da X, Ou Y, Emblem KE, Muzikansky A, Cai X, Douw L, Evans JG, Dietrich J, Chi AS, Wen PY, Stufflebeam S, Rosen B, Duda DG, Jain RK, Batchelor TT, Gerstner ER. Phase II study of tivozanib, an oral VEGFR inhibitor, in patients with recurrent glioblastoma. J Neurooncol. 2017 02; 131(3):603-610. PMID: 27853960; PMCID: PMC7672995.
    Citations: 31     Fields:    Translation:HumansCTClinical Trials
  138. Le M, Delingette H, Kalpathy-Cramer J, Gerstner ER, Batchelor T, Unkelbach J, Ayache N. Personalized Radiotherapy Planning Based on a Computational Tumor Growth Model. IEEE Trans Med Imaging. 2017 03; 36(3):815-825. PMID: 28113925.
    Citations: 6     Fields:    Translation:Humans
  139. Le M, Delingette H, Kalpathy-Cramer J, Gerstner ER, Batchelor T, Unkelbach J, Ayache N. Personalized Radiotherapy Planning Based on a Computational Tumor Growth Model. IEEE Trans Med Imaging. 2016 Nov 08. PMID: 27845656.
    Citations:    
  140. Boujelben A, Watson M, McDougall S, Yen YF, Gerstner ER, Catana C, Deisboeck T, Batchelor TT, Boas D, Rosen B, Kalpathy-Cramer J, Chaplain MA. Multimodality imaging and mathematical modelling of drug delivery to glioblastomas. Interface Focus. 2016 Oct 06; 6(5):20160039. PMID: 27708763; PMCID: PMC4992742.
    Citations: 15     
  141. Campbell JP, Kalpathy-Cramer J, Erdogmus D, Tian P, Kedarisetti D, Moleta C, Reynolds JD, Hutcheson K, Shapiro MJ, Repka MX, Ferrone P, Drenser K, Horowitz J, Sonmez K, Swan R, Ostmo S, Jonas KE, Chan RV, Chiang MF. Plus Disease in Retinopathy of Prematurity: A Continuous Spectrum of Vascular Abnormality as a Basis of Diagnostic Variability. Ophthalmology. 2016 11; 123(11):2338-2344. PMID: 27591053.
    Citations: 31     Fields:    Translation:HumansPHPublic Health
  142. Kalpathy-Cramer J, Campbell JP, Erdogmus D, Tian P, Kedarisetti D, Moleta C, Reynolds JD, Hutcheson K, Shapiro MJ, Repka MX, Ferrone P, Drenser K, Horowitz J, Sonmez K, Swan R, Ostmo S, Jonas KE, Chan RV, Chiang MF. Plus Disease in Retinopathy of Prematurity: Improving Diagnosis by Ranking Disease Severity and Using Quantitative Image Analysis. Ophthalmology. 2016 11; 123(11):2345-2351. PMID: 27566853.
    Citations: 27     Fields:    Translation:Humans
  143. Kalpathy-Cramer J, Zhao B, Goldgof D, Gu Y, Wang X, Yang H, Tan Y, Gillies R, Napel S. A Comparison of Lung Nodule Segmentation Algorithms: Methods and Results from a Multi-institutional Study. J Digit Imaging. 2016 08; 29(4):476-87. PMID: 26847203.
    Citations: 24     Fields:    Translation:Humans
  144. Ataer-Cansizoglu E, Kalpathy-Cramer J, Ostmo S, Jonas K, Chan RV, Campbell JP, Chiang MF, Erdogmus D. Toward a severity index for ROP: An unsupervised approach. Annu Int Conf IEEE Eng Med Biol Soc. 2016 Aug; 2016:1312-1315. PMID: 28268567; PMCID: PMC5482004.
    Citations:    Fields:    Translation:Humans
  145. Campbell JP, Ataer-Cansizoglu E, Bolon-Canedo V, Bozkurt A, Erdogmus D, Kalpathy-Cramer J, Patel SN, Reynolds JD, Horowitz J, Hutcheson K, Shapiro M, Repka MX, Ferrone P, Drenser K, Martinez-Castellanos MA, Ostmo S, Jonas K, Chan RV, Chiang MF. Expert Diagnosis of Plus Disease in Retinopathy of Prematurity From Computer-Based Image Analysis. JAMA Ophthalmol. 2016 Jun 01; 134(6):651-7. PMID: 27077667; PMCID: PMC5201139.
    Citations: 41     Fields:    Translation:Humans
  146. Le M, Delingette H, Kalpathy-Cramer J, Gerstner E, Batchelor T, Unkelbach J, Ayache N. MRI Based Bayesian Personalization of a Tumor Growth Model. IEEE Trans Med Imaging. 2016 Apr 29. PMID: 28113549.
    Citations:    
  147. Le M, Delingette H, Kalpathy-Cramer J, Gerstner ER, Batchelor T, Unkelbach J, Ayache N. MRI Based Bayesian Personalization of a Tumor Growth Model. IEEE Trans Med Imaging. 2016 10; 35(10):2329-2339. PMID: 27164582.
    Citations: 10     Fields:    Translation:Humans
  148. Huang W, Chen Y, Fedorov A, Li X, Jajamovich GH, Malyarenko DI, Aryal MP, LaViolette PS, Oborski MJ, O'Sullivan F, Abramson RG, Jafari-Khouzani K, Afzal A, Tudorica A, Moloney B, Gupta SN, Besa C, Kalpathy-Cramer J, Mountz JM, Laymon CM, Muzi M, Schmainda K, Cao Y, Chenevert TL, Taouli B, Yankeelov TE, Fennessy F, Li X. The Impact of Arterial Input Function Determination Variations on Prostate Dynamic Contrast-Enhanced Magnetic Resonance Imaging Pharmacokinetic Modeling: A Multicenter Data Analysis Challenge. Tomography. 2016 Mar; 2(1):56-66. PMID: 27200418; PMCID: PMC4869732.
    Citations: 37     Fields:    
  149. Messer JA, Mohamed AS, Hutcheson KA, Ding Y, Lewin JS, Wang J, Lai SY, Frank SJ, Garden AS, Sandulache V, Eichelberger H, French CC, Colen RR, Phan J, Kalpathy-Cramer J, Hazle JD, Rosenthal DI, Gunn GB, Fuller CD. Magnetic resonance imaging of swallowing-related structures in nasopharyngeal carcinoma patients receiving IMRT: Longitudinal dose-response characterization of quantitative signal kinetics. Radiother Oncol. 2016 Feb; 118(2):315-22. PMID: 26830697.
    Citations: 14     Fields:    Translation:HumansPHPublic Health
  150. Yankeelov TE, Mankoff DA, Schwartz LH, Lieberman FS, Buatti JM, Mountz JM, Erickson BJ, Fennessy FM, Huang W, Kalpathy-Cramer J, Wahl RL, Linden HM, Kinahan PE, Zhao B, Hylton NM, Gillies RJ, Clarke L, Nordstrom R, Rubin DL. Quantitative Imaging in Cancer Clinical Trials. Clin Cancer Res. 2016 Jan 15; 22(2):284-90. PMID: 26773162.
    Citations: 51     Fields:    Translation:Humans
  151. Ataer-Cansizoglu E, Bolon-Canedo V, Campbell JP, Bozkurt A, Erdogmus D, Kalpathy-Cramer J, Patel S, Jonas K, Chan RV, Ostmo S, Chiang MF. Computer-Based Image Analysis for Plus Disease Diagnosis in Retinopathy of Prematurity: Performance of the "i-ROP" System and Image Features Associated With Expert Diagnosis. Transl Vis Sci Technol. 2015 Nov; 4(6):5. PMID: 26644965; PMCID: PMC4669635.
    Citations: 35     Fields:    
  152. Holliday E, Fuller CD, Kalpathy-Cramer J, Gomez D, Rimner A, Li Y, Senan S, Wilson LD, Choi J, Komaki R, Thomas CR. Quantitative assessment of target delineation variability for thymic cancers: Agreement evaluation of a prospective segmentation challenge. J Radiat Oncol. 2016 Mar; 5(1):55-61. PMID: 27570583; PMCID: PMC4996619.
    Citations: 2     
  153. Ding Y, Hazle JD, Mohamed AS, Frank SJ, Hobbs BP, Colen RR, Gunn GB, Wang J, Kalpathy-Cramer J, Garden AS, Lai SY, Rosenthal DI, Fuller CD. Intravoxel incoherent motion imaging kinetics during chemoradiotherapy for human papillomavirus-associated squamous cell carcinoma of the oropharynx: preliminary results from a prospective pilot study. NMR Biomed. 2015 Dec; 28(12):1645-54. PMID: 26451969; PMCID: PMC4715635.
    Citations: 22     Fields:    Translation:Cells
  154. Shoultz-Henley S, Garden AS, Mohamed AS, Sheu T, Kroll MH, Rosenthal DI, Gunn GB, Hayes AJ, French C, Eichelberger H, Kalpathy-Cramer J, Smith BD, Phan J, Ayoub Z, Lai SY, Pham B, Kies M, Gold KA, Sturgis E, Fuller CD. Prognostic value of pretherapy platelet elevation in oropharyngeal cancer patients treated with chemoradiation. Int J Cancer. 2016 Mar 01; 138(5):1290-7. PMID: 26414107; PMCID: PMC4779600.
    Citations: 7     Fields:    Translation:Humans
  155. Ellingson BM, Bendszus M, Boxerman J, Barboriak D, Erickson BJ, Smits M, Nelson SJ, Gerstner E, Alexander B, Goldmacher G, Wick W, Vogelbaum M, Weller M, Galanis E, Kalpathy-Cramer J, Shankar L, Jacobs P, Pope WB, Yang D, Chung C, Knopp MV, Cha S, van den Bent MJ, Chang S, Yung WK, Cloughesy TF, Wen PY, Gilbert MR. Consensus recommendations for a standardized Brain Tumor Imaging Protocol in clinical trials. Neuro Oncol. 2015 Sep; 17(9):1188-98. PMID: 26250565; PMCID: PMC4588759.
    Citations: 209     Fields:    Translation:Humans
  156. Prust MJ, Jafari-Khouzani K, Kalpathy-Cramer J, Polaskova P, Batchelor TT, Gerstner ER, Dietrich J. Standard chemoradiation for glioblastoma results in progressive brain volume loss. Neurology. 2015 Aug 25; 85(8):683-91. PMID: 26208964; PMCID: PMC4553035.
    Citations: 27     Fields:    Translation:HumansCTClinical Trials
  157. Bolón-Canedo V, Ataer-Cansizoglu E, Erdogmus D, Kalpathy-Cramer J, Fontenla-Romero O, Alonso-Betanzos A, Chiang MF. Dealing with inter-expert variability in retinopathy of prematurity: A machine learning approach. Comput Methods Programs Biomed. 2015 Oct; 122(1):1-15. PMID: 26120072.
    Citations: 10     Fields:    Translation:Humans
  158. Prah MA, Stufflebeam SM, Paulson ES, Kalpathy-Cramer J, Gerstner ER, Batchelor TT, Barboriak DP, Rosen BR, Schmainda KM. Repeatability of Standardized and Normalized Relative CBV in Patients with Newly Diagnosed Glioblastoma. AJNR Am J Neuroradiol. 2015 Sep; 36(9):1654-61. PMID: 26066626.
    Citations: 22     Fields:    Translation:Humans
  159. Jafari-Khouzani K, Emblem KE, Kalpathy-Cramer J, Bjørnerud A, Vangel MG, Gerstner ER, Schmainda KM, Paynabar K, Wu O, Wen PY, Batchelor T, Rosen B, Stufflebeam SM. Repeatability of Cerebral Perfusion Using Dynamic Susceptibility Contrast MRI in Glioblastoma Patients. Transl Oncol. 2015 Jun; 8(3):137-46. PMID: 26055170; PMCID: PMC4486737.
    Citations: 23     
  160. Demner-Fushman D, Antani S, Kalpathy-Cramer J, Müller H. A decade of community-wide efforts in advancing medical image understanding and retrieval. Comput Med Imaging Graph. 2015 Jan; 39:1-2. PMID: 25572585.
    Citations: 1     Fields:    
  161. Menze BH, Jakab A, Bauer S, Kalpathy-Cramer J, Farahani K, Kirby J, Burren Y, Porz N, Slotboom J, Wiest R, Lanczi L, Gerstner E, Weber MA, Arbel T, Avants BB, Ayache N, Buendia P, Collins DL, Cordier N, Corso JJ, Criminisi A, Das T, Delingette H, Demiralp Ç, Durst CR, Dojat M, Doyle S, Festa J, Forbes F, Geremia E, Glocker B, Golland P, Guo X, Hamamci A, Iftekharuddin KM, Jena R, John NM, Konukoglu E, Lashkari D, Mariz JA, Meier R, Pereira S, Precup D, Price SJ, Raviv TR, Reza SM, Ryan M, Sarikaya D, Schwartz L, Shin HC, Shotton J, Silva CA, Sousa N, Subbanna NK, Szekely G, Taylor TJ, Thomas OM, Tustison NJ, Unal G, Vasseur F, Wintermark M, Ye DH, Zhao L, Zhao B, Zikic D, Prastawa M, Reyes M, Van Leemput K. The Multimodal Brain Tumor Image Segmentation Benchmark (BRATS). IEEE Trans Med Imaging. 2015 Oct; 34(10):1993-2024. PMID: 25494501; PMCID: PMC4833122.
    Citations: 508     Fields:    Translation:Humans
  162. Ataer-Cansizoglu E, Kalpathy-Cramer J, You S, Keck K, Erdogmus D, Chiang MF. Analysis of underlying causes of inter-expert disagreement in retinopathy of prematurity diagnosis. Application of machine learning principles. Methods Inf Med. 2015; 54(1):93-102. PMID: 25434784.
    Citations: 18     Fields:    Translation:Humans
  163. Mohamed AS, Ruangskul MN, Awan MJ, Baron CA, Kalpathy-Cramer J, Castillo R, Castillo E, Guerrero TM, Kocak-Uzel E, Yang J, Court LE, Kantor ME, Gunn GB, Colen RR, Frank SJ, Garden AS, Rosenthal DI, Fuller CD. Quality assurance assessment of diagnostic and radiation therapy-simulation CT image registration for head and neck radiation therapy: anatomic region of interest-based comparison of rigid and deformable algorithms. Radiology. 2015 Mar; 274(3):752-63. PMID: 25380454; PMCID: PMC4358813.
    Citations: 31     Fields:    Translation:Humans
  164. Awan M, Dyer BA, Kalpathy-Cramer J, Bongers E, Dahele M, Yang J, Walker GV, Thaker NG, Holliday E, Bishop AJ, Thomas CR, Rosenthal DI, Fuller CD. Auto-segmentation of the brachial plexus assessed with TaCTICS - a software platform for rapid multiple-metric quantitative evaluation of contours. Acta Oncol. 2015 Apr; 54(4):557-60. PMID: 25279958.
    Citations: 1     Fields:    Translation:Humans
  165. Kalpathy-Cramer J, Gerstner ER, Emblem KE, Andronesi O, Rosen B. Advanced magnetic resonance imaging of the physical processes in human glioblastoma. Cancer Res. 2014 Sep 01; 74(17):4622-4637. PMID: 25183787.
    Citations: 65     Fields:    Translation:Humans
  166. Batchelor TT, Gerstner ER, Emblem KE, Duda DG, Kalpathy-Cramer J, Snuderl M, Ancukiewicz M, Polaskova P, Pinho MC, Jennings D, Plotkin SR, Chi AS, Eichler AF, Dietrich J, Hochberg FH, Lu-Emerson C, Iafrate AJ, Ivy SP, Rosen B, Loeffler JS, Wen PY, Sorensen AG, Jain RK. Increased perfusion due to vascular normalization improves oxygenation and survival in glioblastoma patients treated with cediranib with or without chemoradiation. Neuro Oncol. 2014 Jul; 16 Suppl 3:iii12. PMID: 25165209.
    Citations:    
  167. Obuchowski NA, Reeves AP, Huang EP, Wang XF, Buckler AJ, Kim HJ, Barnhart HX, Jackson EF, Giger ML, Pennello G, Toledano AY, Kalpathy-Cramer J, Apanasovich TV, Kinahan PE, Myers KJ, Goldgof DB, Barboriak DP, Gillies RJ, Schwartz LH, Sullivan DC. Quantitative imaging biomarkers: a review of statistical methods for computer algorithm comparisons. Stat Methods Med Res. 2015 Feb; 24(1):68-106. PMID: 24919829.
    Citations: 52     Fields:    Translation:Humans
  168. Obuchowski NA, Barnhart HX, Buckler AJ, Pennello G, Wang XF, Kalpathy-Cramer J, Kim HJ, Reeves AP. Statistical issues in the comparison of quantitative imaging biomarker algorithms using pulmonary nodule volume as an example. Stat Methods Med Res. 2015 Feb; 24(1):107-40. PMID: 24919828.
    Citations: 19     Fields:    Translation:Humans
  169. Gutman DA, Dunn WD, Cobb J, Stoner RM, Kalpathy-Cramer J, Erickson B. Web based tools for visualizing imaging data and development of XNATView, a zero footprint image viewer. Front Neuroinform. 2014; 8:53. PMID: 24904399.
    Citations: 4     
  170. Kalpathy-Cramer J, de Herrera AG, Demner-Fushman D, Antani S, Bedrick S, Müller H. Evaluating performance of biomedical image retrieval systems--an overview of the medical image retrieval task at ImageCLEF 2004-2013. Comput Med Imaging Graph. 2015 Jan; 39:55-61. PMID: 24746250.
    Citations: 13     Fields:    
  171. Kalpathy-Cramer J, Freymann JB, Kirby JS, Kinahan PE, Prior FW. Quantitative Imaging Network: Data Sharing and Competitive AlgorithmValidation Leveraging The Cancer Imaging Archive. Transl Oncol. 2014 Feb; 7(1):147-52. PMID: 24772218.
    Citations: 37     
  172. Huang W, Li X, Chen Y, Li X, Chang MC, Oborski MJ, Malyarenko DI, Muzi M, Jajamovich GH, Fedorov A, Tudorica A, Gupta SN, Laymon CM, Marro KI, Dyvorne HA, Miller JV, Barbodiak DP, Chenevert TL, Yankeelov TE, Mountz JM, Kinahan PE, Kikinis R, Taouli B, Fennessy F, Kalpathy-Cramer J. Variations of dynamic contrast-enhanced magnetic resonance imaging in evaluation of breast cancer therapy response: a multicenter data analysis challenge. Transl Oncol. 2014 Feb; 7(1):153-66. PMID: 24772219.
    Citations: 55     
  173. Kalpathy-Cramer J, Awan M, Bedrick S, Rasch CR, Rosenthal DI, Fuller CD. Development of a software for quantitative evaluation radiotherapy target and organ-at-risk segmentation comparison. J Digit Imaging. 2014 Feb; 27(1):108-19. PMID: 24043593.
    Citations: 5     Fields:    
  174. Pinho MC, Polaskova P, Kalpathy-Cramer J, Jennings D, Emblem KE, Jain RK, Rosen BR, Wen PY, Sorensen AG, Batchelor TT, Gerstner ER. Low incidence of pseudoprogression by imaging in newly diagnosed glioblastoma patients treated with cediranib in combination with chemoradiation. Oncologist. 2014 Jan; 19(1):75-81. PMID: 24309981.
    Citations: 8     Fields:    Translation:HumansCTClinical Trials
  175. Batchelor TT, Gerstner ER, Emblem KE, Duda DG, Kalpathy-Cramer J, Snuderl M, Ancukiewicz M, Polaskova P, Pinho MC, Jennings D, Plotkin SR, Chi AS, Eichler AF, Dietrich J, Hochberg FH, Lu-Emerson C, Iafrate AJ, Ivy SP, Rosen BR, Loeffler JS, Wen PY, Sorensen AG, Jain RK. Improved tumor oxygenation and survival in glioblastoma patients who show increased blood perfusion after cediranib and chemoradiation. Proc Natl Acad Sci U S A. 2013 Nov 19; 110(47):19059-64. PMID: 24190997.
    Citations: 178     Fields:    Translation:HumansCTClinical Trials
  176. Keck KM, Kalpathy-Cramer J, Ataer-Cansizoglu E, You S, Erdogmus D, Chiang MF. Plus disease diagnosis in retinopathy of prematurity: vascular tortuosity as a function of distance from optic disk. Retina. 2013 Sep; 33(8):1700-7. PMID: 23538582.
    Citations: 13     Fields:    Translation:Humans
  177. Taliercio V, Logan JR, Kalpathy-Cramer J, Oteroa P. Developing a survey to assess factors that contribute to physician involvement in clinical research. Stud Health Technol Inform. 2013; 192:107-11. PMID: 23920525; PMCID: PMC3932813.
    Citations: 1     Fields:    Translation:Humans
  178. Awan M, Kalpathy-Cramer J, Gunn GB, Beadle BM, Garden AS, Phan J, Holliday E, Jones WE, Maani E, Patel A, Choi J, Clyburn V, Tantiwongkosi B, Rosenthal DI, Fuller CD. Prospective assessment of an atlas-based intervention combined with real-time software feedback in contouring lymph node levels and organs-at-risk in the head and neck: Quantitative assessment of conformance to expert delineation. Pract Radiat Oncol. 2013 Jul-Sep; 3(3):186-193. PMID: 24674363.
    Citations: 7     Fields:    
  179. Fedorov A, Beichel R, Kalpathy-Cramer J, Finet J, Fillion-Robin JC, Pujol S, Bauer C, Jennings D, Fennessy F, Sonka M, Buatti J, Aylward S, Miller JV, Pieper S, Kikinis R. 3D Slicer as an image computing platform for the Quantitative Imaging Network. Magn Reson Imaging. 2012 Nov; 30(9):1323-41. PMID: 22770690.
    Citations: 1468     Fields:    Translation:Humans
  180. Kahn CE, Kalpathy-Cramer J, Lam CA, Eldredge CE. Accurate determination of imaging modality using an ensemble of text- and image-based classifiers. J Digit Imaging. 2012 Feb; 25(1):37-42. PMID: 21748413.
    Citations: 2     Fields:    Translation:Humans
  181. Dizdaroglu B, Ataer-Cansizoglu E, Kalpathy-Cramer J, Keck K, Chiang MF, Erdogmus D. Level Sets for Retinal Vasculature Segmentation Using Seeds from Ridges and Edges from Phase Maps. IEEE Int Workshop Mach Learn Signal Process. 2012; 1-6. PMID: 24975694.
    Citations: 4     
  182. Ataer-Cansizoglu E, You S, Kalpathy-Cramer J, Keck K, Chiang MF, Erdogmus D. OBSERVER AND FEATURE ANALYSIS ON DIAGNOSIS OF RETINOPATHY OF PREMATURITY. IEEE Int Workshop Mach Learn Signal Process. 2012; 1-6. PMID: 25003972.
    Citations: 6     
  183. Wang SJ, Lemieux A, Kalpathy-Cramer J, Ord CB, Walker GV, Fuller CD, Kim JS, Thomas CR. Nomogram for predicting the benefit of adjuvant chemoradiotherapy for resected gallbladder cancer. J Clin Oncol. 2011 Dec 10; 29(35):4627-32. PMID: 22067404.
    Citations: 73     Fields:    Translation:Humans
  184. Kalpathy-Cramer J, Bedrick SD, Boccia K, Fuller CD. A pilot prospective feasibility study of organ-at-risk definition using Target Contour Testing/Instructional Computer Software (TaCTICS), a training and evaluation platform for radiotherapy target delineation. AMIA Annu Symp Proc. 2011; 2011:654-63. PMID: 22195121.
    Citations: 7     Fields:    Translation:Humans
  185. Wang SJ, Wissel AR, Ord CB, Kalpathy-Cramer J, Fuller CD, Holland JM, Gross ND. Individualized estimation of conditional survival for patients with head and neck cancer. Otolaryngol Head Neck Surg. 2011 Jul; 145(1):71-3. PMID: 21493289.
    Citations: 6     Fields:    Translation:Humans
  186. Wang SJ, Wissel AR, Luh JY, Fuller CD, Kalpathy-Cramer J, Thomas CR. An interactive tool for individualized estimation of conditional survival in rectal cancer. Ann Surg Oncol. 2011 Jun; 18(6):1547-52. PMID: 21207162.
    Citations: 7     Fields:    Translation:Humans
  187. You S, Bas E, Ataer-Cansizoglu E, Kalpathy-Cramer J, Erdogmus D. Principal curve based semi-automatic segmentation of organs in 3D-CT. Annu Int Conf IEEE Eng Med Biol Soc. 2011; 2011:6220-3. PMID: 22255760.
    Citations:    Fields:    Translation:Humans
  188. Kalpathy-Cramer J, Fuller CD. Target Contour Testing/Instructional Computer Software (TaCTICS): A Novel Training and Evaluation Platform for Radiotherapy Target Delineation. AMIA Annu Symp Proc. 2010 Nov 13; 2010:361-5. PMID: 21347001.
    Citations: 9     Fields:    Translation:Humans
  189. Wang SJ, Kalpathy-Cramer J, Kim JS, Fuller CD, Thomas CR. Parametric survival models for predicting the benefit of adjuvant chemoradiotherapy in gallbladder cancer. AMIA Annu Symp Proc. 2010 Nov 13; 2010:847-51. PMID: 21347098.
    Citations: 8