Harvard Catalyst Profiles

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Jayashree Kalpathy-Cramer, Ph.D.

Title
Institution
Department
Address

Research
The research activities and funding listed below are automatically derived from NIH ExPORTER and other sources, which might result in incorrect or missing items. Faculty can login to make corrections and additions.
  1. U01CA242879 (RUBIN, DANIEL L) Sep 16, 2019 - Aug 31, 2022
    NIH/NCI
    Distributed Learning of Deep Learning Models for Cancer Research
    Role: Co-Principal Investigator
  2. U24CA180927 (KALPATHY-CRAMER, JAYASHREE) Sep 1, 2014 - Aug 31, 2019
    NIH/NCI
    Informatics Tools for Optimized Imaging Biomarkers for Cancer Research&Discovery
    Role: Principal Investigator
  3. R21EY022387 (KALPATHY-CRAMER, JAYASHREE) Sep 1, 2013 - Aug 31, 2015
    NIH/NEI
    Automated retinopathy of prematurity classification using machine learning
    Role: Co-Principal Investigator
  4. U01CA154601 (KALPATHY-CRAMER, JAYASHREE) May 6, 2011 - Apr 30, 2017
    NIH/NCI
    Quantitative MRI of Glioblastoma Response
    Role: Principal Investigator
  5. R00LM009889 (KALPATHY-CRAMER, JAYASHREE) Sep 15, 2009 - Sep 14, 2014
    NIH/NLM
    Clinical Image Retrieval: User needs assessment toolbox development &evaluation
    Role: Principal Investigator

Bibliographic
Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
  1. Balachandar N, Chang K, Kalpathy-Cramer J, Rubin DL. Corrigendum to: Accounting for data variability in multi-institutional distributed deep learning for medical imaging. J Am Med Inform Assoc. 2020 Jun 28. PMID: 32594122.
    Citations:    
  2. Chang K, Beers AL, Brink L, Patel JB, Singh P, Arun NT, Hoebel KV, Gaw N, Shah M, Pisano ED, Tilkin M, Coombs LP, Dreyer KJ, Allen B, Agarwal S, Kalpathy-Cramer J. Multi-Institutional Assessment and Crowdsourcing Evaluation of Deep Learning for Automated Classification of Breast Density. J Am Coll Radiol. 2020 Jun 24. PMID: 32592660.
    Citations:    
  3. Beers A, Brown J, Chang K, Hoebel K, Patel J, Ly KI, Tolaney SM, Brastianos P, Rosen B, Gerstner ER, Kalpathy-Cramer J. DeepNeuro: an open-source deep learning toolbox for neuroimaging. Neuroinformatics. 2020 Jun 23. PMID: 32578020.
    Citations:    
  4. Sun H, Jain A, Leone MJ, Alabsi HS, Brenner LN, Ye E, Ge W, Shao YP, Boutros CL, Wang R, Tesh RA, Magdamo C, Collens SI, Ganglberger W, Bassett IV, Meigs JB, Kalpathy-Cramer J, Li MD, Chu JT, Dougan M, Stratton L, Rosand J, Fischl B, Das S, Mukerji SS, Robbins GK, Westover MB. COVID-19 Outpatient Screening: a Prediction Score for Adverse Events. medRxiv. 2020 Jun 22. PMID: 32607523.
    Citations:    
  5. Boxerman JL, Quarles CC, Hu LS, Erickson BJ, Gerstner ER, Smits M, Kaufmann TJ, Barboriak DP, Huang RH, Wick W, Weller M, Galanis E, Kalpathy-Cramer J, Shankar L, Jacobs P, Chung C, van den Bent MJ, Chang S, Al Yung WK, Cloughesy TF, Wen PY, Gilbert MR, Rosen BR, Ellingson BM, Schmainda KM. Consensus Recommendations for a Dynamic Susceptibility Contrast MRI Protocol for Use in High-Grade Gliomas. Neuro Oncol. 2020 Jun 09. PMID: 32516388.
    Citations:    
  6. McNitt-Gray M, Napel S, Jaggi A, Mattonen SA, Hadjiiski L, Muzi M, Goldgof D, Balagurunathan Y, Pierce LA, Kinahan PE, Jones EF, Nguyen A, Virkud A, Chan HP, Emaminejad N, Wahi-Anwar M, Daly M, Abdalah M, Yang H, Lu L, Lv W, Rahmim A, Gastounioti A, Pati S, Bakas S, Kontos D, Zhao B, Kalpathy-Cramer J, Farahani K. Standardization in Quantitative Imaging: A Multicenter Comparison of Radiomic Features from Different Software Packages on Digital Reference Objects and Patient Data Sets. Tomography. 2020 06; 6(2):118-128. PMID: 32548288.
    Citations:    
  7. Cardenas CE, Mohamed ASR, Yang J, Gooding M, Veeraraghavan H, Kalpathy-Cramer J, Ng SP, Ding Y, Wang J, Lai SY, Fuller CD, Sharp G. Head and neck cancer patient images for determining auto-segmentation accuracy in T2-weighted magnetic resonance imaging through expert manual segmentations. Med Phys. 2020 Jun; 47(5):2317-2322. PMID: 32418343.
    Citations:    
  8. Bell LC, Semmineh N, An H, Eldeniz C, Wahl R, Schmainda KM, Prah MA, Erickson BJ, Korfiatis P, Wu C, Sorace AG, Yankeelov TE, Rutledge N, Chenevert TL, Malyarenko D, Liu Y, Brenner A, Hu LS, Zhou Y, Boxerman JL, Yen YF, Kalpathy-Cramer J, Beers AL, Muzi M, Madhuranthakam AJ, Pinho M, Johnson B, Quarles CC. Evaluating the Use of rCBV as a Tumor Grade and Treatment Response Classifier Across NCI Quantitative Imaging Network Sites: Part II of the DSC-MRI Digital Reference Object (DRO) Challenge. Tomography. 2020 06; 6(2):203-208. PMID: 32548297.
    Citations:    
  9. Li MD, Arun NT, Gidwani M, Chang K, Deng F, Little BP, Mendoza DP, Lang M, Lee SI, O'Shea A, Parakh A, Singh P, Kalpathy-Cramer J. Automated assessment of COVID-19 pulmonary disease severity on chest radiographs using convolutional Siamese neural networks. medRxiv. 2020 May 26. PMID: 32511570.
    Citations:    
  10. Choi RY, Brown JM, Kalpathy-Cramer J, Chan RVP, Ostmo S, Chiang MF, Campbell JP. Real-World Variability in Plus Disease Identified Using a Deep Learning-Based Retinopathy of Prematurity Severity Scale. Ophthalmol Retina. 2020 May 04. PMID: 32380115.
    Citations:    
  11. Fedorov A, Beichel R, Kalpathy-Cramer J, Clunie D, Onken M, Riesmeier J, Herz C, Bauer C, Beers A, Fillion-Robin JC, Lasso A, Pinter C, Pieper S, Nolden M, Maier-Hein K, Herrmann MD, Saltz J, Prior F, Fennessy F, Buatti J, Kikinis R. Quantitative Imaging Informatics for Cancer Research. JCO Clin Cancer Inform. 2020 May; 4:444-453. PMID: 32392097.
    Citations:    
  12. Balachandar N, Chang K, Kalpathy-Cramer J, Rubin DL. Accounting for data variability in multi-institutional distributed deep learning for medical imaging. J Am Med Inform Assoc. 2020 May 01; 27(5):700-708. PMID: 32196092.
    Citations:    
  13. Greenwald MF, Danford ID, Shahrawat M, Ostmo S, Brown J, Kalpathy-Cramer J, Bradshaw K, Schelonka R, Cohen HS, Chan RVP, Chiang MF, Campbell JP. Evaluation of artificial intelligence-based telemedicine screening for retinopathy of prematurity. J AAPOS. 2020 Apr 11. PMID: 32289490.
    Citations:    
  14. Li MD, Chang K, Bearce B, Chang CY, Huang AJ, Campbell JP, Brown JM, Singh P, Hoebel KV, Erdogmus D, Ioannidis S, Palmer WE, Chiang MF, Kalpathy-Cramer J. Siamese neural networks for continuous disease severity evaluation and change detection in medical imaging. NPJ Digit Med. 2020; 3:48. PMID: 32258430.
    Citations:    
  15. Choi RY, Coyner AS, Kalpathy-Cramer J, Chiang MF, Campbell JP. Introduction to Machine Learning, Neural Networks, and Deep Learning. Transl Vis Sci Technol. 2020 Feb 27; 9(2):14. PMID: 32704420.
    Citations:    
  16. Kurc T, Bakas S, Ren X, Bagari A, Momeni A, Huang Y, Zhang L, Kumar A, Thibault M, Qi Q, Wang Q, Kori A, Gevaert O, Zhang Y, Shen D, Khened M, Ding X, Krishnamurthi G, Kalpathy-Cramer J, Davis J, Zhao T, Gupta R, Saltz J, Farahani K. Segmentation and Classification in Digital Pathology for Glioma Research: Challenges and Deep Learning Approaches. Front Neurosci. 2020; 14:27. PMID: 32153349.
    Citations:    
  17. Yildiz VM, Tian P, Yildiz I, Brown JM, Kalpathy-Cramer J, Dy J, Ioannidis S, Erdogmus D, Ostmo S, Kim SJ, Chan RVP, Campbell JP, Chiang MF. Plus Disease in Retinopathy of Prematurity: Convolutional Neural Network Performance Using a Combined Neural Network and Feature Extraction Approach. Transl Vis Sci Technol. 2020 Feb 14; 9(2):10. PMID: 32704416.
    Citations:    
  18. Scruggs BA, Chan RVP, Kalpathy-Cramer J, Chiang MF, Campbell JP. Artificial Intelligence in Retinopathy of Prematurity Diagnosis. Transl Vis Sci Technol. 2020 Feb 10; 9(2):5. PMID: 32704411.
    Citations:    
  19. Bellsmith KN, Brown J, Kim SJ, Goldstein IH, Coyner A, Ostmo S, Gupta K, Chan RVP, Kalpathy-Cramer J, Chiang MF, Campbell JP. Aggressive Posterior Retinopathy of Prematurity: Clinical and Quantitative Imaging Features in a Large North American Cohort. Ophthalmology. 2020 Aug; 127(8):1105-1112. PMID: 32197913.
    Citations:    
  20. Pan I, Thodberg HH, Halabi SS, Kalpathy-Cramer J, Larson DB. Improving Automated Pediatric Bone Age Estimation Using Ensembles of Models from the 2017 RSNA Machine Learning Challenge. Radiol Artif Intell. 2019 Nov 20; 1(6):e190053. PMID: 32090207.
    Citations:    
  21. Chang K, Beers AL, Bai HX, Brown JM, Ly KI, Li X, Senders JT, Kavouridis VK, Boaro A, Su C, Bi WL, Rapalino O, Liao W, Shen Q, Zhou H, Xiao B, Wang Y, Zhang PJ, Pinho MC, Wen PY, Batchelor TT, Boxerman JL, Arnaout O, Rosen BR, Gerstner ER, Yang L, Huang RY, Kalpathy-Cramer J. Automatic assessment of glioma burden: a deep learning algorithm for fully automated volumetric and bidimensional measurement. Neuro Oncol. 2019 11 04; 21(11):1412-1422. PMID: 31190077.
    Citations:    
  22. Gerstner ER, Emblem KE, Chang K, Vakulenko-Lagun B, Yen YF, Beers AL, Dietrich J, Plotkin SR, Catana C, Hooker JM, Duda DG, Rosen B, Kalpathy-Cramer J, Jain RK, Batchelor T. Bevacizumab Reduces Permeability and Concurrent Temozolomide Delivery in a Subset of Patients with Recurrent Glioblastoma. Clin Cancer Res. 2020 01 01; 26(1):206-212. PMID: 31558474.
    Citations:    
  23. Morales MA, Izquierdo-Garcia D, Aganj I, Kalpathy-Cramer J, Rosen BR, Catana C. Implementation and Validation of a Three-dimensional Cardiac Motion Estimation Network. Radiol Artif Intell. 2019 Jul 17; 1(4):e180080. PMID: 32076659.
    Citations:    
  24. Silva MA, Patel J, Kavouridis V, Gallerani T, Beers A, Chang K, Hoebel KV, Brown J, See AP, Gormley WB, Aziz-Sultan MA, Kalpathy-Cramer J, Arnaout O, Patel NJ. Machine Learning Models can Detect Aneurysm Rupture and Identify Clinical Features Associated with Rupture. World Neurosurg. 2019 Nov; 131:e46-e51. PMID: 31295616.
    Citations:    
  25. Taylor S, Brown JM, Gupta K, Campbell JP, Ostmo S, Chan RVP, Dy J, Erdogmus D, Ioannidis S, Kim SJ, Kalpathy-Cramer J, Chiang MF. Monitoring Disease Progression With a Quantitative Severity Scale for Retinopathy of Prematurity Using Deep Learning. JAMA Ophthalmol. 2019 Jul 03. PMID: 31268518.
    Citations:    
  26. Gupta K, Campbell JP, Taylor S, Brown JM, Ostmo S, Chan RVP, Dy J, Erdogmus D, Ioannidis S, Kalpathy-Cramer J, Kim SJ, Chiang MF. A Quantitative Severity Scale for Retinopathy of Prematurity Using Deep Learning to Monitor Disease Regression After Treatment. JAMA Ophthalmol. 2019 Jul 03. PMID: 31268499.
    Citations:    
  27. Yildiz I, Tian P, Dy J, Erdogmus D, Brown J, Kalpathy-Cramer J, Ostmo S, Peter Campbell J, Chiang MF, Ioannidis S. Classification and comparison via neural networks. Neural Netw. 2019 Oct; 118:65-80. PMID: 31254769.
    Citations:    
  28. Ly KI, Vakulenko-Lagun B, Emblem KE, Ou Y, Da X, Betensky RA, Kalpathy-Cramer J, Duda DG, Jain RK, Chi AS, Plotkin SR, Batchelor TT, Sorensen G, Rosen BR, Gerstner ER. Publisher Correction: Probing tumor microenvironment in patients with newly diagnosed glioblastoma during chemoradiation and adjuvant temozolomide with functional MRI. Sci Rep. 2019 Jun 14; 9(1):8721. PMID: 31197238.
    Citations:    
  29. Choudhery S, Chou SS, Chang K, Kalpathy-Cramer J, Lehman CD. Kinetic Analysis of Lesions Identified on a Rapid Abridged Multiphase (RAMP) Breast MRI Protocol. Acad Radiol. 2020 05; 27(5):672-681. PMID: 31147233.
    Citations:    
  30. Allen B, Agarwal S, Kalpathy-Cramer J, Dreyer K. Democratizing AI. J Am Coll Radiol. 2019 Jul; 16(7):961-963. PMID: 31272590.
    Citations:    
  31. Langlotz CP, Allen B, Erickson BJ, Kalpathy-Cramer J, Bigelow K, Cook TS, Flanders AE, Lungren MP, Mendelson DS, Rudie JD, Wang G, Kandarpa K. A Roadmap for Foundational Research on Artificial Intelligence in Medical Imaging: From the 2018 NIH/RSNA/ACR/The Academy Workshop. Radiology. 2019 06; 291(3):781-791. PMID: 30990384.
    Citations:    
  32. Vu QD, Graham S, Kurc T, To MNN, Shaban M, Qaiser T, Koohbanani NA, Khurram SA, Kalpathy-Cramer J, Zhao T, Gupta R, Kwak JT, Rajpoot N, Saltz J, Farahani K. Methods for Segmentation and Classification of Digital Microscopy Tissue Images. Front Bioeng Biotechnol. 2019; 7:53. PMID: 31001524.
    Citations:    
  33. Huang W, Chen Y, Fedorov A, Li X, Jajamovich GH, Malyarenko DI, Aryal MP, LaViolette PS, Oborski MJ, O'Sullivan F, Abramson RG, Jafari-Khouzani K, Afzal A, Tudorica A, Moloney B, Gupta SN, Besa C, Kalpathy-Cramer J, Mountz JM, Laymon CM, Muzi M, Kinahan PE, Schmainda K, Cao Y, Chenevert TL, Taouli B, Yankeelov TE, Fennessy F, Li X. The Impact of Arterial Input Function Determination Variations on Prostate Dynamic Contrast-Enhanced Magnetic Resonance Imaging Pharmacokinetic Modeling: A Multicenter Data Analysis Challenge, Part II. Tomography. 2019 03; 5(1):99-109. PMID: 30854447.
    Citations:    
  34. Bell LC, Semmineh N, An H, Eldeniz C, Wahl R, Schmainda KM, Prah MA, Erickson BJ, Korfiatis P, Wu C, Sorace AG, Yankeelov TE, Rutledge N, Chenevert TL, Malyarenko D, Liu Y, Brenner A, Hu LS, Zhou Y, Boxerman JL, Yen YF, Kalpathy-Cramer J, Beers AL, Muzi M, Madhuranthakam AJ, Pinho M, Johnson B, Quarles CC. Evaluating Multisite rCBV Consistency from DSC-MRI Imaging Protocols and Postprocessing Software Across the NCI Quantitative Imaging Network Sites Using a Digital Reference Object (DRO). Tomography. 2019 03; 5(1):110-117. PMID: 30854448.
    Citations:    
  35. Coyner AS, Swan R, Campbell JP, Ostmo S, Brown JM, Kalpathy-Cramer J, Kim SJ, Jonas KE, Chan RVP, Chiang MF. Automated Fundus Image Quality Assessment in Retinopathy of Prematurity Using Deep Convolutional Neural Networks. Ophthalmol Retina. 2019 05; 3(5):444-450. PMID: 31044738.
    Citations:    
  36. Elhalawani H, Elgohari B, Lin TA, Mohamed ASR, Fitzgerald TJ, Laurie F, Ulin K, Kalpathy-Cramer J, Guerrero T, Holliday EB, Russo G, Patel A, Jones W, Walker GV, Awan M, Choi M, Dagan R, Mahmoud O, Shapiro A, Kong FS, Gomez D, Zeng J, Decker R, Spoelstra FOB, Gaspar LE, Kachnic LA, Thomas CR, Okunieff P, Fuller CD. An in-silico quality assurance study of contouring target volumes in thoracic tumors within a cooperative group setting. Clin Transl Radiat Oncol. 2019 Feb; 15:83-92. PMID: 30775563.
    Citations:    
  37. Coyner AS, Swan R, Brown JM, Kalpathy-Cramer J, Kim SJ, Campbell JP, Jonas KE, Ostmo S, Chan RVP, Chiang MF. Deep Learning for Image Quality Assessment of Fundus Images in Retinopathy of Prematurity. AMIA Annu Symp Proc. 2018; 2018:1224-1232. PMID: 30815164.
    Citations:    
  38. Halabi SS, Prevedello LM, Kalpathy-Cramer J, Mamonov AB, Bilbily A, Cicero M, Pan I, Pereira LA, Sousa RT, Abdala N, Kitamura FC, Thodberg HH, Chen L, Shih G, Andriole K, Kohli MD, Erickson BJ, Flanders AE. The RSNA Pediatric Bone Age Machine Learning Challenge. Radiology. 2019 02; 290(2):498-503. PMID: 30480490.
    Citations:    Fields:    
  39. Redd TK, Campbell JP, Brown JM, Kim SJ, Ostmo S, Chan RVP, Dy J, Erdogmus D, Ioannidis S, Kalpathy-Cramer J, Chiang MF. Evaluation of a deep learning image assessment system for detecting severe retinopathy of prematurity. Br J Ophthalmol. 2018 Nov 23. PMID: 30470715.
    Citations:    
  40. Ly KI, Vakulenko-Lagun B, Emblem KE, Ou Y, Da X, Betensky RA, Kalpathy-Cramer J, Duda DG, Jain RK, Chi AS, Plotkin SR, Batchelor TT, Sorensen G, Rosen BR, Gerstner ER. Probing tumor microenvironment in patients with newly diagnosed glioblastoma during chemoradiation and adjuvant temozolomide with functional MRI. Sci Rep. 2018 11 20; 8(1):17062. PMID: 30459364.
    Citations:    Fields:    
  41. Armato SG, Huisman H, Drukker K, Hadjiiski L, Kirby JS, Petrick N, Redmond G, Giger ML, Cha K, Mamonov A, Kalpathy-Cramer J, Farahani K. PROSTATEx Challenges for computerized classification of prostate lesions from multiparametric magnetic resonance images. J Med Imaging (Bellingham). 2018 Oct; 5(4):044501. PMID: 30840739.
    Citations:    
  42. Lee A, Taylor P, Kalpathy-Cramer J, Tufail A. Reply. Ophthalmology. 2018 12; 125(12):e86. PMID: 30343936.
    Citations:    Fields:    
  43. Ou Y, Zöllei L, Da X, Retzepi K, Murphy SN, Gerstner ER, Rosen BR, Grant PE, Kalpathy-Cramer J, Gollub RL. Field of View Normalization in Multi-Site Brain MRI. Neuroinformatics. 2018 10; 16(3-4):431-444. PMID: 29353341.
    Citations:    Fields:    
  44. Winzeck S, Hakim A, McKinley R, Pinto JAADSR, Alves V, Silva C, Pisov M, Krivov E, Belyaev M, Monteiro M, Oliveira A, Choi Y, Paik MC, Kwon Y, Lee H, Kim BJ, Won JH, Islam M, Ren H, Robben D, Suetens P, Gong E, Niu Y, Xu J, Pauly JM, Lucas C, Heinrich MP, Rivera LC, Castillo LS, Daza LA, Beers AL, Arbelaezs P, Maier O, Chang K, Brown JM, Kalpathy-Cramer J, Zaharchuk G, Wiest R, Reyes M. ISLES 2016 and 2017-Benchmarking Ischemic Stroke Lesion Outcome Prediction Based on Multispectral MRI. Front Neurol. 2018; 9:679. PMID: 30271370.
    Citations:    
  45. Robins M, Kalpathy-Cramer J, Obuchowski NA, Buckler A, Athelogou M, Jarecha R, Petrick N, Pezeshk A, Sahiner B, Samei E. Evaluation of Simulated Lesions as Surrogates to Clinical Lesions for Thoracic CT Volumetry: The Results of an International Challenge. Acad Radiol. 2019 07; 26(7):e161-e173. PMID: 30219290.
    Citations:    Fields:    
  46. Ng SP, Dyer BA, Kalpathy-Cramer J, Mohamed ASR, Awan MJ, Gunn GB, Phan J, Zafereo M, Debnam JM, Lewis CM, Colen RR, Kupferman ME, Guha-Thakurta N, Canahuate G, Marai GE, Vock D, Hamilton B, Holland J, Cardenas CE, Lai S, Rosenthal D, Fuller CD. A prospective in silico analysis of interdisciplinary and interobserver spatial variability in post-operative target delineation of high-risk oral cavity cancers: Does physician specialty matter? Clin Transl Radiat Oncol. 2018 Aug; 12:40-46. PMID: 30148217.
    Citations:    
  47. Chang K, Balachandar N, Lam C, Yi D, Brown J, Beers A, Rosen B, Rubin DL, Kalpathy-Cramer J. Distributed deep learning networks among institutions for medical imaging. J Am Med Inform Assoc. 2018 08 01; 25(8):945-954. PMID: 29617797.
    Citations:    Fields:    
  48. Brown JM, Campbell JP, Beers A, Chang K, Ostmo S, Chan RVP, Dy J, Erdogmus D, Ioannidis S, Kalpathy-Cramer J, Chiang MF. Automated Diagnosis of Plus Disease in Retinopathy of Prematurity Using Deep Convolutional Neural Networks. JAMA Ophthalmol. 2018 07 01; 136(7):803-810. PMID: 29801159.
    Citations:    
  49. Kim SJ, Campbell JP, Kalpathy-Cramer J, Ostmo S, Jonas KE, Choi D, Chan RVP, Chiang MF. Accuracy and Reliability of Eye-Based vs Quadrant-Based Diagnosis of Plus Disease in Retinopathy of Prematurity. JAMA Ophthalmol. 2018 06 01; 136(6):648-655. PMID: 29710185.
    Citations:    
  50. Schmainda KM, Prah MA, Rand SD, Liu Y, Logan B, Muzi M, Rane SD, Da X, Yen YF, Kalpathy-Cramer J, Chenevert TL, Hoff B, Ross B, Cao Y, Aryal MP, Erickson B, Korfiatis P, Dondlinger T, Bell L, Hu L, Kinahan PE, Quarles CC. Multisite Concordance of DSC-MRI Analysis for Brain Tumors: Results of a National Cancer Institute Quantitative Imaging Network Collaborative Project. AJNR Am J Neuroradiol. 2018 06; 39(6):1008-1016. PMID: 29794239.
    Citations:    Fields:    
  51. Balagurunathan Y, Beers A, Kalpathy-Cramer J, McNitt-Gray M, Hadjiiski L, Zhao B, Zhu J, Yang H, Yip SSF, Aerts HJWL, Napel S, Cherezov D, Cha K, Chan HP, Flores C, Garcia A, Gillies R, Goldgof D. Erratum: Semi-automated pulmonary nodule interval segmentation using the NLST data. Med Phys. 2018 Jun; 45(6):2689-2690. PMID: 29894564.
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  52. Balagurunathan Y, Beers A, Kalpathy-Cramer J, McNitt-Gray M, Hadjiiski L, Zhao B, Zhu J, Yang H, Yip SSF, Aerts HJWL, Napel S, Cherezov D, Cha K, Chan HP, Flores C, Garcia A, Gillies R, Goldgof D. Semi-automated pulmonary nodule interval segmentation using the NLST data. Med Phys. 2018 Mar; 45(3):1093-1107. PMID: 29363773.
    Citations:    Fields:    Translation:HumansPHPublic Health
  53. Prust ML, Jafari-Khouzani K, Kalpathy-Cramer J, Polaskova P, Batchelor TT, Gerstner ER, Dietrich J. Standard chemoradiation in combination with VEGF targeted therapy for glioblastoma results in progressive gray and white matter volume loss. Neuro Oncol. 2018 01 22; 20(2):289-291. PMID: 29315410.
    Citations:    Fields:    Translation:Humans
  54. Lauer A, Da X, Hansen MB, Boulouis G, Ou Y, Cai X, Liberato Celso Pedrotti A, Kalpathy-Cramer J, Caruso P, Hayden DL, Rost N, Mouridsen K, Eichler FS, Rosen B, Musolino PL. ABCD1 dysfunction alters white matter microvascular perfusion. Brain. 2017 Dec 01; 140(12):3139-3152. PMID: 29136088.
    Citations:    Fields:    Translation:Humans
  55. Lee A, Taylor P, Kalpathy-Cramer J, Tufail A. Machine Learning Has Arrived! Ophthalmology. 2017 12; 124(12):1726-1728. PMID: 29157423.
    Citations: 2     Fields:    Translation:Humans
  56. Shazeeb MS, Kalpathy-Cramer J, Issa B. MRI Simulation Study Investigating Effects of Vessel Topology, Diffusion, and Susceptibility on Transverse Relaxation Rates Using a Cylinder Fork Model. Sci Rep. 2017 11 24; 7(1):16223. PMID: 29176647.
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  57. Chang K, Bai HX, Zhou H, Su C, Bi WL, Agbodza E, Kavouridis VK, Senders JT, Boaro A, Beers A, Zhang B, Capellini A, Liao W, Shen Q, Li X, Xiao B, Cryan J, Ramkissoon S, Ramkissoon L, Ligon K, Wen PY, Bindra RS, Woo J, Arnaout O, Gerstner ER, Zhang PJ, Rosen BR, Yang L, Huang RY, Kalpathy-Cramer J. Residual Convolutional Neural Network for the Determination of IDH Status in Low- and High-Grade Gliomas from MR Imaging. Clin Cancer Res. 2018 03 01; 24(5):1073-1081. PMID: 29167275.
    Citations: 5     Fields:    
  58. Farrar CT, Gale EM, Kennan R, Ramsay I, Masia R, Arora G, Looby K, Wei L, Kalpathy-Cramer J, Bunzel MM, Zhang C, Zhu Y, Akiyama TE, Klimas M, Pinto S, Diyabalanage H, Tanabe KK, Humblet V, Fuchs BC, Caravan P. CM-101: Type I Collagen-targeted MR Imaging Probe for Detection of Liver Fibrosis. Radiology. 2018 05; 287(2):581-589. PMID: 29156148.
    Citations: 2     Fields:    Translation:Animals
  59. Newitt DC, Malyarenko D, Chenevert TL, Quarles CC, Bell L, Fedorov A, Fennessy F, Jacobs MA, Solaiyappan M, Hectors S, Taouli B, Muzi M, Kinahan PE, Schmainda KM, Prah MA, Taber EN, Kroenke C, Huang W, Arlinghaus LR, Yankeelov TE, Cao Y, Aryal M, Yen YF, Kalpathy-Cramer J, Shukla-Dave A, Fung M, Liang J, Boss M, Hylton N. Multisite concordance of apparent diffusion coefficient measurements across the NCI Quantitative Imaging Network. J Med Imaging (Bellingham). 2018 Jan; 5(1):011003. PMID: 29021993.
    Citations: 1     
  60. Zhou M, Scott J, Chaudhury B, Hall L, Goldgof D, Yeom KW, Iv M, Ou Y, Kalpathy-Cramer J, Napel S, Gillies R, Gevaert O, Gatenby R. Radiomics in Brain Tumor: Image Assessment, Quantitative Feature Descriptors, and Machine-Learning Approaches. AJNR Am J Neuroradiol. 2018 02; 39(2):208-216. PMID: 28982791.
    Citations: 3     Fields:    
  61. Bane O, Hectors SJ, Wagner M, Arlinghaus LL, Aryal MP, Cao Y, Chenevert TL, Fennessy F, Huang W, Hylton NM, Kalpathy-Cramer J, Keenan KE, Malyarenko DI, Mulkern RV, Newitt DC, Russek SE, Stupic KF, Tudorica A, Wilmes LJ, Yankeelov TE, Yen YF, Boss MA, Taouli B. Accuracy, repeatability, and interplatform reproducibility of T1 quantification methods used for DCE-MRI: Results from a multicenter phantom study. Magn Reson Med. 2018 05; 79(5):2564-2575. PMID: 28913930.
    Citations: 1     Fields:    
  62. A Multi-Institutional Comparison of Dynamic Contrast-Enhanced Magnetic Resonance Imaging Parameter Calculations. Sci Rep. 2017 09 11; 7(1):11185. PMID: 28894197.
    Citations: 1     Fields:    
  63. Saltz J, Almeida J, Gao Y, Sharma A, Bremer E, DiPrima T, Saltz M, Kalpathy-Cramer J, Kurc T. Towards Generation, Management, and Exploration of Combined Radiomics and Pathomics Datasets for Cancer Research. AMIA Jt Summits Transl Sci Proc. 2017; 2017:85-94. PMID: 28815113.
    Citations: 2     
  64. Moleta C, Campbell JP, Kalpathy-Cramer J, Chan RVP, Ostmo S, Jonas K, Chiang MF. Plus Disease in Retinopathy of Prematurity: Diagnostic Trends in 2016 Versus 2007. Am J Ophthalmol. 2017 Apr; 176:70-76. PMID: 28087400.
    Citations:    
  65. Kalpathy-Cramer J, Mamomov A, Zhao B, Lu L, Cherezov D, Napel S, Echegaray S, Rubin D, McNitt-Gray M, Lo P, Sieren JC, Uthoff J, Dilger SK, Driscoll B, Yeung I, Hadjiiski L, Cha K, Balagurunathan Y, Gillies R, Goldgof D. Radiomics of Lung Nodules: A Multi-Institutional Study of Robustness and Agreement of Quantitative Imaging Features. Tomography. 2016 Dec; 2(4):430-437. PMID: 28149958.
    Citations: 9     
  66. Farahani K, Kalpathy-Cramer J, Chenevert TL, Rubin DL, Sunderland JJ, Nordstrom RJ, Buatti J, Hylton N. Computational Challenges and Collaborative Projects in the NCI Quantitative Imaging Network. Tomography. 2016 Dec; 2(4):242-249. PMID: 28798963.
    Citations: 1     
  67. Hansen MB, Tietze A, Kalpathy-Cramer J, Gerstner ER, Batchelor TT, Østergaard L, Mouridsen K. Reliable estimation of microvascular flow patterns in patients with disrupted blood-brain barrier using dynamic susceptibility contrast MRI. J Magn Reson Imaging. 2017 08; 46(2):537-549. PMID: 27902858.
    Citations: 2     Fields:    Translation:Humans
  68. Kalpathy-Cramer J, Chandra V, Da X, Ou Y, Emblem KE, Muzikansky A, Cai X, Douw L, Evans JG, Dietrich J, Chi AS, Wen PY, Stufflebeam S, Rosen B, Duda DG, Jain RK, Batchelor TT, Gerstner ER. Phase II study of tivozanib, an oral VEGFR inhibitor, in patients with recurrent glioblastoma. J Neurooncol. 2017 02; 131(3):603-610. PMID: 27853960.
    Citations: 5     Fields:    Translation:HumansCTClinical Trials
  69. Le M, Delingette H, Kalpathy-Cramer J, Gerstner ER, Batchelor T, Unkelbach J, Ayache N. Personalized Radiotherapy Planning Based on a Computational Tumor Growth Model. IEEE Trans Med Imaging. 2017 03; 36(3):815-825. PMID: 28113925.
    Citations:    Fields:    Translation:Humans
  70. Le M, Delingette H, Kalpathy-Cramer J, Gerstner ER, Batchelor T, Unkelbach J, Ayache N. Personalized Radiotherapy Planning Based on a Computational Tumor Growth Model. IEEE Trans Med Imaging. 2016 Nov 08. PMID: 27845656.
    Citations:    
  71. Boujelben A, Watson M, McDougall S, Yen YF, Gerstner ER, Catana C, Deisboeck T, Batchelor TT, Boas D, Rosen B, Kalpathy-Cramer J, Chaplain MA. Multimodality imaging and mathematical modelling of drug delivery to glioblastomas. Interface Focus. 2016 Oct 06; 6(5):20160039. PMID: 27708763.
    Citations: 2     
  72. Campbell JP, Kalpathy-Cramer J, Erdogmus D, Tian P, Kedarisetti D, Moleta C, Reynolds JD, Hutcheson K, Shapiro MJ, Repka MX, Ferrone P, Drenser K, Horowitz J, Sonmez K, Swan R, Ostmo S, Jonas KE, Chan RV, Chiang MF. Plus Disease in Retinopathy of Prematurity: A Continuous Spectrum of Vascular Abnormality as a Basis of Diagnostic Variability. Ophthalmology. 2016 11; 123(11):2338-2344. PMID: 27591053.
    Citations:    
  73. Kalpathy-Cramer J, Campbell JP, Erdogmus D, Tian P, Kedarisetti D, Moleta C, Reynolds JD, Hutcheson K, Shapiro MJ, Repka MX, Ferrone P, Drenser K, Horowitz J, Sonmez K, Swan R, Ostmo S, Jonas KE, Chan RV, Chiang MF. Plus Disease in Retinopathy of Prematurity: Improving Diagnosis by Ranking Disease Severity and Using Quantitative Image Analysis. Ophthalmology. 2016 11; 123(11):2345-2351. PMID: 27566853.
    Citations:    
  74. Kalpathy-Cramer J, Zhao B, Goldgof D, Gu Y, Wang X, Yang H, Tan Y, Gillies R, Napel S. A Comparison of Lung Nodule Segmentation Algorithms: Methods and Results from a Multi-institutional Study. J Digit Imaging. 2016 08; 29(4):476-87. PMID: 26847203.
    Citations: 6     Fields:    Translation:Humans
  75. Ataer-Cansizoglu E, Kalpathy-Cramer J, Ostmo S, Jonas K, Chan RV, Campbell JP, Chiang MF, Erdogmus D. Toward a severity index for ROP: An unsupervised approach. Conf Proc IEEE Eng Med Biol Soc. 2016 08; 2016:1312-1315. PMID: 28268567.
    Citations:    
  76. Campbell JP, Ataer-Cansizoglu E, Bolon-Canedo V, Bozkurt A, Erdogmus D, Kalpathy-Cramer J, Patel SN, Reynolds JD, Horowitz J, Hutcheson K, Shapiro M, Repka MX, Ferrone P, Drenser K, Martinez-Castellanos MA, Ostmo S, Jonas K, Chan RV, Chiang MF. Expert Diagnosis of Plus Disease in Retinopathy of Prematurity From Computer-Based Image Analysis. JAMA Ophthalmol. 2016 Jun 01; 134(6):651-7. PMID: 27077667.
    Citations:    
  77. Le M, Delingette H, Kalpathy-Cramer J, Gerstner ER, Batchelor T, Unkelbach J, Ayache N. MRI Based Bayesian Personalization of a Tumor Growth Model. IEEE Trans Med Imaging. 2016 10; 35(10):2329-2339. PMID: 27164582.
    Citations: 2     Fields:    Translation:Humans
  78. Le M, Delingette H, Kalpathy-Cramer J, Gerstner E, Batchelor T, Unkelbach J, Ayache N. MRI Based Bayesian Personalization of a Tumor Growth Model. IEEE Trans Med Imaging. 2016 Apr 29. PMID: 28113549.
    Citations:    
  79. Huang W, Chen Y, Fedorov A, Li X, Jajamovich GH, Malyarenko DI, Aryal MP, LaViolette PS, Oborski MJ, O'Sullivan F, Abramson RG, Jafari-Khouzani K, Afzal A, Tudorica A, Moloney B, Gupta SN, Besa C, Kalpathy-Cramer J, Mountz JM, Laymon CM, Muzi M, Schmainda K, Cao Y, Chenevert TL, Taouli B, Yankeelov TE, Fennessy F, Li X. The Impact of Arterial Input Function Determination Variations on Prostate Dynamic Contrast-Enhanced Magnetic Resonance Imaging Pharmacokinetic Modeling: A Multicenter Data Analysis Challenge. Tomography. 2016 Mar; 2(1):56-66. PMID: 27200418.
    Citations: 7     
  80. Messer JA, Mohamed AS, Hutcheson KA, Ding Y, Lewin JS, Wang J, Lai SY, Frank SJ, Garden AS, Sandulache V, Eichelberger H, French CC, Colen RR, Phan J, Kalpathy-Cramer J, Hazle JD, Rosenthal DI, Gunn GB, Fuller CD. Magnetic resonance imaging of swallowing-related structures in nasopharyngeal carcinoma patients receiving IMRT: Longitudinal dose-response characterization of quantitative signal kinetics. Radiother Oncol. 2016 Feb; 118(2):315-22. PMID: 26830697.
    Citations: 3     Fields:    Translation:HumansPHPublic Health
  81. Yankeelov TE, Mankoff DA, Schwartz LH, Lieberman FS, Buatti JM, Mountz JM, Erickson BJ, Fennessy FM, Huang W, Kalpathy-Cramer J, Wahl RL, Linden HM, Kinahan PE, Zhao B, Hylton NM, Gillies RJ, Clarke L, Nordstrom R, Rubin DL. Quantitative Imaging in Cancer Clinical Trials. Clin Cancer Res. 2016 Jan 15; 22(2):284-90. PMID: 26773162.
    Citations: 18     Fields:    Translation:Humans
  82. Ataer-Cansizoglu E, Bolon-Canedo V, Campbell JP, Bozkurt A, Erdogmus D, Kalpathy-Cramer J, Patel S, Jonas K, Chan RV, Ostmo S, Chiang MF. Computer-Based Image Analysis for Plus Disease Diagnosis in Retinopathy of Prematurity: Performance of the "i-ROP" System and Image Features Associated With Expert Diagnosis. Transl Vis Sci Technol. 2015 Nov; 4(6):5. PMID: 26644965.
    Citations: 3     
  83. Holliday E, Fuller CD, Kalpathy-Cramer J, Gomez D, Rimner A, Li Y, Senan S, Wilson LD, Choi J, Komaki R, Thomas CR. Quantitative assessment of target delineation variability for thymic cancers: Agreement evaluation of a prospective segmentation challenge. J Radiat Oncol. 2016 Mar; 5(1):55-61. PMID: 27570583.
    Citations:    
  84. Shoultz-Henley S, Garden AS, Mohamed AS, Sheu T, Kroll MH, Rosenthal DI, Gunn GB, Hayes AJ, French C, Eichelberger H, Kalpathy-Cramer J, Smith BD, Phan J, Ayoub Z, Lai SY, Pham B, Kies M, Gold KA, Sturgis E, Fuller CD. Prognostic value of pretherapy platelet elevation in oropharyngeal cancer patients treated with chemoradiation. Int J Cancer. 2016 Mar 01; 138(5):1290-7. PMID: 26414107.
    Citations: 3     Fields:    Translation:Humans
  85. Ding Y, Hazle JD, Mohamed AS, Frank SJ, Hobbs BP, Colen RR, Gunn GB, Wang J, Kalpathy-Cramer J, Garden AS, Lai SY, Rosenthal DI, Fuller CD. Intravoxel incoherent motion imaging kinetics during chemoradiotherapy for human papillomavirus-associated squamous cell carcinoma of the oropharynx: preliminary results from a prospective pilot study. NMR Biomed. 2015 Dec; 28(12):1645-54. PMID: 26451969.
    Citations: 6     Fields:    Translation:Cells
  86. Ellingson BM, Bendszus M, Boxerman J, Barboriak D, Erickson BJ, Smits M, Nelson SJ, Gerstner E, Alexander B, Goldmacher G, Wick W, Vogelbaum M, Weller M, Galanis E, Kalpathy-Cramer J, Shankar L, Jacobs P, Pope WB, Yang D, Chung C, Knopp MV, Cha S, van den Bent MJ, Chang S, Yung WK, Cloughesy TF, Wen PY, Gilbert MR. Consensus recommendations for a standardized Brain Tumor Imaging Protocol in clinical trials. Neuro Oncol. 2015 Sep; 17(9):1188-98. PMID: 26250565.
    Citations: 49     Fields:    Translation:Humans
  87. Prust MJ, Jafari-Khouzani K, Kalpathy-Cramer J, Polaskova P, Batchelor TT, Gerstner ER, Dietrich J. Standard chemoradiation for glioblastoma results in progressive brain volume loss. Neurology. 2015 Aug 25; 85(8):683-91. PMID: 26208964.
    Citations: 11     Fields:    Translation:HumansCTClinical Trials
  88. Bolón-Canedo V, Ataer-Cansizoglu E, Erdogmus D, Kalpathy-Cramer J, Fontenla-Romero O, Alonso-Betanzos A, Chiang MF. Dealing with inter-expert variability in retinopathy of prematurity: A machine learning approach. Comput Methods Programs Biomed. 2015 Oct; 122(1):1-15. PMID: 26120072.
    Citations: 1     Fields:    Translation:Humans
  89. Prah MA, Stufflebeam SM, Paulson ES, Kalpathy-Cramer J, Gerstner ER, Batchelor TT, Barboriak DP, Rosen BR, Schmainda KM. Repeatability of Standardized and Normalized Relative CBV in Patients with Newly Diagnosed Glioblastoma. AJNR Am J Neuroradiol. 2015 Sep; 36(9):1654-61. PMID: 26066626.
    Citations: 3     Fields:    Translation:Humans
  90. Jafari-Khouzani K, Emblem KE, Kalpathy-Cramer J, Bjørnerud A, Vangel MG, Gerstner ER, Schmainda KM, Paynabar K, Wu O, Wen PY, Batchelor T, Rosen B, Stufflebeam SM. Repeatability of Cerebral Perfusion Using Dynamic Susceptibility Contrast MRI in Glioblastoma Patients. Transl Oncol. 2015 Jun; 8(3):137-46. PMID: 26055170.
    Citations: 5     
  91. Demner-Fushman D, Antani S, Kalpathy-Cramer J, Müller H. A decade of community-wide efforts in advancing medical image understanding and retrieval. Comput Med Imaging Graph. 2015 Jan; 39:1-2. PMID: 25572585.
    Citations:    Fields:    
  92. Menze BH, Jakab A, Bauer S, Kalpathy-Cramer J, Farahani K, Kirby J, Burren Y, Porz N, Slotboom J, Wiest R, Lanczi L, Gerstner E, Weber MA, Arbel T, Avants BB, Ayache N, Buendia P, Collins DL, Cordier N, Corso JJ, Criminisi A, Das T, Delingette H, Demiralp Ç, Durst CR, Dojat M, Doyle S, Festa J, Forbes F, Geremia E, Glocker B, Golland P, Guo X, Hamamci A, Iftekharuddin KM, Jena R, John NM, Konukoglu E, Lashkari D, Mariz JA, Meier R, Pereira S, Precup D, Price SJ, Raviv TR, Reza SM, Ryan M, Sarikaya D, Schwartz L, Shin HC, Shotton J, Silva CA, Sousa N, Subbanna NK, Szekely G, Taylor TJ, Thomas OM, Tustison NJ, Unal G, Vasseur F, Wintermark M, Ye DH, Zhao L, Zhao B, Zikic D, Prastawa M, Reyes M, Van Leemput K. The Multimodal Brain Tumor Image Segmentation Benchmark (BRATS). IEEE Trans Med Imaging. 2015 Oct; 34(10):1993-2024. PMID: 25494501.
    Citations: 82     Fields:    Translation:Humans
  93. Ataer-Cansizoglu E, Kalpathy-Cramer J, You S, Keck K, Erdogmus D, Chiang MF. Analysis of underlying causes of inter-expert disagreement in retinopathy of prematurity diagnosis. Application of machine learning principles. Methods Inf Med. 2015; 54(1):93-102. PMID: 25434784.
    Citations: 6     Fields:    Translation:Humans
  94. Mohamed AS, Ruangskul MN, Awan MJ, Baron CA, Kalpathy-Cramer J, Castillo R, Castillo E, Guerrero TM, Kocak-Uzel E, Yang J, Court LE, Kantor ME, Gunn GB, Colen RR, Frank SJ, Garden AS, Rosenthal DI, Fuller CD. Quality assurance assessment of diagnostic and radiation therapy-simulation CT image registration for head and neck radiation therapy: anatomic region of interest-based comparison of rigid and deformable algorithms. Radiology. 2015 Mar; 274(3):752-63. PMID: 25380454.
    Citations: 11     Fields:    Translation:Humans
  95. Awan M, Dyer BA, Kalpathy-Cramer J, Bongers E, Dahele M, Yang J, Walker GV, Thaker NG, Holliday E, Bishop AJ, Thomas CR, Rosenthal DI, Fuller CD. Auto-segmentation of the brachial plexus assessed with TaCTICS - a software platform for rapid multiple-metric quantitative evaluation of contours. Acta Oncol. 2015 Apr; 54(4):557-60. PMID: 25279958.
    Citations:    Fields:    Translation:Humans
  96. Kalpathy-Cramer J, Gerstner ER, Emblem KE, Andronesi O, Rosen B. Advanced magnetic resonance imaging of the physical processes in human glioblastoma. Cancer Res. 2014 Sep 01; 74(17):4622-4637. PMID: 25183787.
    Citations: 28     Fields:    Translation:Humans
  97. Batchelor TT, Gerstner ER, Emblem KE, Duda DG, Kalpathy-Cramer J, Snuderl M, Ancukiewicz M, Polaskova P, Pinho MC, Jennings D, Plotkin SR, Chi AS, Eichler AF, Dietrich J, Hochberg FH, Lu-Emerson C, Iafrate AJ, Ivy SP, Rosen B, Loeffler JS, Wen PY, Sorensen AG, Jain RK. Increased perfusion due to vascular normalization improves oxygenation and survival in glioblastoma patients treated with cediranib with or without chemoradiation. Neuro Oncol. 2014 Jul; 16 Suppl 3:iii12. PMID: 25165209.
    Citations:    
  98. Obuchowski NA, Barnhart HX, Buckler AJ, Pennello G, Wang XF, Kalpathy-Cramer J, Kim HJ, Reeves AP. Statistical issues in the comparison of quantitative imaging biomarker algorithms using pulmonary nodule volume as an example. Stat Methods Med Res. 2015 Feb; 24(1):107-40. PMID: 24919828.
    Citations: 11     Fields:    Translation:Humans
  99. Obuchowski NA, Reeves AP, Huang EP, Wang XF, Buckler AJ, Kim HJ, Barnhart HX, Jackson EF, Giger ML, Pennello G, Toledano AY, Kalpathy-Cramer J, Apanasovich TV, Kinahan PE, Myers KJ, Goldgof DB, Barboriak DP, Gillies RJ, Schwartz LH, Sullivan DC. Quantitative imaging biomarkers: a review of statistical methods for computer algorithm comparisons. Stat Methods Med Res. 2015 Feb; 24(1):68-106. PMID: 24919829.
    Citations: 26     Fields:    Translation:Humans
  100. Gutman DA, Dunn WD, Cobb J, Stoner RM, Kalpathy-Cramer J, Erickson B. Web based tools for visualizing imaging data and development of XNATView, a zero footprint image viewer. Front Neuroinform. 2014; 8:53. PMID: 24904399.
    Citations: 2     
  101. Kalpathy-Cramer J, de Herrera AG, Demner-Fushman D, Antani S, Bedrick S, Müller H. Evaluating performance of biomedical image retrieval systems--an overview of the medical image retrieval task at ImageCLEF 2004-2013. Comput Med Imaging Graph. 2015 Jan; 39:55-61. PMID: 24746250.
    Citations: 2     Fields:    
  102. Kalpathy-Cramer J, Awan M, Bedrick S, Rasch CR, Rosenthal DI, Fuller CD. Development of a software for quantitative evaluation radiotherapy target and organ-at-risk segmentation comparison. J Digit Imaging. 2014 Feb; 27(1):108-19. PMID: 24043593.
    Citations: 3     Fields:    
  103. Huang W, Li X, Chen Y, Li X, Chang MC, Oborski MJ, Malyarenko DI, Muzi M, Jajamovich GH, Fedorov A, Tudorica A, Gupta SN, Laymon CM, Marro KI, Dyvorne HA, Miller JV, Barbodiak DP, Chenevert TL, Yankeelov TE, Mountz JM, Kinahan PE, Kikinis R, Taouli B, Fennessy F, Kalpathy-Cramer J. Variations of dynamic contrast-enhanced magnetic resonance imaging in evaluation of breast cancer therapy response: a multicenter data analysis challenge. Transl Oncol. 2014 Feb; 7(1):153-66. PMID: 24772219.
    Citations: 25     
  104. Kalpathy-Cramer J, Freymann JB, Kirby JS, Kinahan PE, Prior FW. Quantitative Imaging Network: Data Sharing and Competitive AlgorithmValidation Leveraging The Cancer Imaging Archive. Transl Oncol. 2014 Feb; 7(1):147-52. PMID: 24772218.
    Citations: 13     
  105. Pinho MC, Polaskova P, Kalpathy-Cramer J, Jennings D, Emblem KE, Jain RK, Rosen BR, Wen PY, Sorensen AG, Batchelor TT, Gerstner ER. Low incidence of pseudoprogression by imaging in newly diagnosed glioblastoma patients treated with cediranib in combination with chemoradiation. Oncologist. 2014 Jan; 19(1):75-81. PMID: 24309981.
    Citations: 7     Fields:    Translation:HumansCTClinical Trials
  106. Batchelor TT, Gerstner ER, Emblem KE, Duda DG, Kalpathy-Cramer J, Snuderl M, Ancukiewicz M, Polaskova P, Pinho MC, Jennings D, Plotkin SR, Chi AS, Eichler AF, Dietrich J, Hochberg FH, Lu-Emerson C, Iafrate AJ, Ivy SP, Rosen BR, Loeffler JS, Wen PY, Sorensen AG, Jain RK. Improved tumor oxygenation and survival in glioblastoma patients who show increased blood perfusion after cediranib and chemoradiation. Proc Natl Acad Sci U S A. 2013 Nov 19; 110(47):19059-64. PMID: 24190997.
    Citations: 100     Fields:    Translation:HumansCTClinical Trials
  107. Keck KM, Kalpathy-Cramer J, Ataer-Cansizoglu E, You S, Erdogmus D, Chiang MF. Plus disease diagnosis in retinopathy of prematurity: vascular tortuosity as a function of distance from optic disk. Retina. 2013 Sep; 33(8):1700-7. PMID: 23538582.
    Citations: 4     Fields:    Translation:Humans
  108. Taliercio V, Logan JR, Kalpathy-Cramer J, Oteroa P. Developing a survey to assess factors that contribute to physician involvement in clinical research. Stud Health Technol Inform. 2013; 192:107-11. PMID: 23920525.
    Citations: 1     Fields:    Translation:Humans
  109. Awan M, Kalpathy-Cramer J, Gunn GB, Beadle BM, Garden AS, Phan J, Holliday E, Jones WE, Maani E, Patel A, Choi J, Clyburn V, Tantiwongkosi B, Rosenthal DI, Fuller CD. Prospective assessment of an atlas-based intervention combined with real-time software feedback in contouring lymph node levels and organs-at-risk in the head and neck: Quantitative assessment of conformance to expert delineation. Pract Radiat Oncol. 2013 Jul-Sep; 3(3):186-193. PMID: 24674363.
    Citations: 2     Fields:    
  110. Fedorov A, Beichel R, Kalpathy-Cramer J, Finet J, Fillion-Robin JC, Pujol S, Bauer C, Jennings D, Fennessy F, Sonka M, Buatti J, Aylward S, Miller JV, Pieper S, Kikinis R. 3D Slicer as an image computing platform for the Quantitative Imaging Network. Magn Reson Imaging. 2012 Nov; 30(9):1323-41. PMID: 22770690.
    Citations: 369     Fields:    Translation:Humans
  111. Kahn CE, Kalpathy-Cramer J, Lam CA, Eldredge CE. Accurate determination of imaging modality using an ensemble of text- and image-based classifiers. J Digit Imaging. 2012 Feb; 25(1):37-42. PMID: 21748413.
    Citations: 1     Fields:    Translation:Humans
  112. Ataer-Cansizoglu E, You S, Kalpathy-Cramer J, Keck K, Chiang MF, Erdogmus D. OBSERVER AND FEATURE ANALYSIS ON DIAGNOSIS OF RETINOPATHY OF PREMATURITY. IEEE Int Workshop Mach Learn Signal Process. 2012; 1-6. PMID: 25003972.
    Citations: 4     
  113. Dizdaroglu B, Ataer-Cansizoglu E, Kalpathy-Cramer J, Keck K, Chiang MF, Erdogmus D. Level Sets for Retinal Vasculature Segmentation Using Seeds from Ridges and Edges from Phase Maps. IEEE Int Workshop Mach Learn Signal Process. 2012; 1-6. PMID: 24975694.
    Citations: 2     
  114. Wang SJ, Lemieux A, Kalpathy-Cramer J, Ord CB, Walker GV, Fuller CD, Kim JS, Thomas CR. Nomogram for predicting the benefit of adjuvant chemoradiotherapy for resected gallbladder cancer. J Clin Oncol. 2011 Dec 10; 29(35):4627-32. PMID: 22067404.
    Citations: 33     Fields:    Translation:Humans
  115. Kalpathy-Cramer J, Bedrick SD, Boccia K, Fuller CD. A pilot prospective feasibility study of organ-at-risk definition using Target Contour Testing/Instructional Computer Software (TaCTICS), a training and evaluation platform for radiotherapy target delineation. AMIA Annu Symp Proc. 2011; 2011:654-63. PMID: 22195121.
    Citations: 6     Fields:    Translation:Humans
  116. Wang SJ, Wissel AR, Ord CB, Kalpathy-Cramer J, Fuller CD, Holland JM, Gross ND. Individualized estimation of conditional survival for patients with head and neck cancer. Otolaryngol Head Neck Surg. 2011 Jul; 145(1):71-3. PMID: 21493289.
    Citations: 4     Fields:    Translation:Humans
  117. Wang SJ, Wissel AR, Luh JY, Fuller CD, Kalpathy-Cramer J, Thomas CR. An interactive tool for individualized estimation of conditional survival in rectal cancer. Ann Surg Oncol. 2011 Jun; 18(6):1547-52. PMID: 21207162.
    Citations: 6     Fields:    Translation:Humans
  118. You S, Bas E, Ataer-Cansizoglu E, Kalpathy-Cramer J, Erdogmus D. Principal curve based semi-automatic segmentation of organs in 3D-CT. Conf Proc IEEE Eng Med Biol Soc. 2011; 2011:6220-3. PMID: 22255760.
    Citations:    Fields:    Translation:Humans
  119. Kalpathy-Cramer J, Fuller CD. Target Contour Testing/Instructional Computer Software (TaCTICS): A Novel Training and Evaluation Platform for Radiotherapy Target Delineation. AMIA Annu Symp Proc. 2010 Nov 13; 2010:361-5. PMID: 21347001.
    Citations: 8     Fields:    Translation:Humans
  120. Wang SJ, Kalpathy-Cramer J, Kim JS, Fuller CD, Thomas CR. Parametric survival models for predicting the benefit of adjuvant chemoradiotherapy in gallbladder cancer. AMIA Annu Symp Proc. 2010 Nov 13; 2010:847-51. PMID: 21347098.
    Citations: 6     Fields:    Translation:Humans
  121. Kalpathy-Cramer J, Bedrick S, Radhouani S, Hersh W, Eggel I, Kahn CE, Müller H. Retrieving similar cases from the medical literature - the ImageCLEF experience. Stud Health Technol Inform. 2010; 160(Pt 2):1189-93. PMID: 20841872.
    Citations:    Fields:    Translation:Humans
  122. Kalpathy-Cramer J, Hersh W, Kim JS, Thomas CR, Wang SJ. Survival prediction models for estimating the benefit of post-operative radiation therapy for gallbladder cancer and lung cancer. AMIA Annu Symp Proc. 2008 Nov 06; 348-52. PMID: 18999217.
    Citations: 1     Fields:    Translation:Humans
  123. Kalpathy-Cramer J, Hersh W. Effectiveness of Global Features for Automatic Medical Image Classification and Retrieval - the experiences of OHSU at ImageCLEFmed. Pattern Recognit Lett. 2008 Nov 01; 29(15):2032-2038. PMID: 19884953.
    Citations: 1     
  124. Hersh W, Müller H, Kalpathy-Cramer J. The ImageCLEFmed medical image retrieval task test collection. J Digit Imaging. 2009 Dec; 22(6):648-55. PMID: 18769965.
    Citations: 7     Fields:    Translation:Humans
  125. Müller H, Kalpathy-Cramer J, Hersh W, Geissbuhler A. Using medline queries to generate image retrieval tasks for benchmarking. Stud Health Technol Inform. 2008; 136:523-8. PMID: 18487784.
    Citations: 2     Fields:    Translation:Humans
  126. Bedrick S, Kalpathy-Cramer J. A Ferret-based gastrointestinal image retrieval system. AMIA Annu Symp Proc. 2007 Oct 11; 868. PMID: 18693969.
    Citations:    Fields:    Translation:Humans
  127. Kalpathy-Cramer J, Hersh W. Automatic image modality based classification and annotation to improve medical image retrieval. Stud Health Technol Inform. 2007; 129(Pt 2):1334-8. PMID: 17911931.
    Citations: 6     Fields:    Translation:Humans
  128. MJ Berman, J Kalpathy-Cramer. Use of ethylene glycol as a corrosion inhibitor during cleaning after metal chemical mechanical polishing.
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Funded by the NIH National Center for Advancing Translational Sciences through its Clinical and Translational Science Awards Program, grant number UL1TR002541.