Okaty, Benjamin
eCommons Login: BO29
first name: Benjamin
last name: Okaty
coauthor of: Dymecki, Susan
coauthor of: Haynes, Robin
coauthor of: Alekseenko, Olga
coauthor of: Gorman, Mark
coauthor of: Vargas, Sara
full name: Benjamin Okaty, Ph.D.
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Person ID: 100883
person in primary position: Research Scientist in Genetics
similar to: Kinney, Hannah
similar to: Dymecki, Susan
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type: Agent
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selected publications: Authorship 1625879
selected publications: Authorship 1627631
selected publications: Authorship 1355505
selected publications: Authorship 1259159
selected publications: Authorship 1144992
selected publications: Authorship 1165551
selected publications: Authorship 1146682
selected publications: Authorship 931507
selected publications: Authorship 911914
selected publications: Authorship 846814
selected publications: Authorship 758567
selected publications: Authorship 714274
selected publications: Authorship 392779
selected publications: Authorship 401995
selected publications: Authorship 544500
selected publications: Authorship 190325
selected publications: Authorship 312790
research areas: Serotonin
research areas: Neurons
research areas: Sudden Infant Death
research areas: Gene Expression Profiling
research areas: Neocortex
mailing address: 77 Avenue Louis Pasteur
positions: Research Scientist in Genetics
preferred title: Research Scientist in Genetics

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A quantitative comparison of cell-type-specific microarray gene expression profiling methods in the mouse brain.
PubMed Identifier: 21304595
author list: Okaty BW, Sugino K, Nelson SB
published in: PloS one
information resource reference: A quantitative comparison of cell-type-specific microarray gene expression profiling methods in the mouse brain. PLoS One. 2011 Jan 27; 6(1):e16493.
journal title abbreviation: PLoS One
publication date: 2011-01-27T00:00:00
year: 2011
type: Academic Article
type: Article
type: Document
type: Information Resource

Serotonin
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number of authors: 478
number of publications: 986
uniqueness weight: 0.707365
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Sudden Infant Death
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number of authors: 105
number of publications: 304
uniqueness weight: 0.784799
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Gene Expression Profiling
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MeSH semantic group name: Genes & Molecular Sequences
MeSH semantic group name: Procedures
number of authors: 3038
number of publications: 9912
uniqueness weight: 0.315847
type: Concept

Authorship 1144992
type: Authorship
author rank in publication: 1
linked author: Okaty, Benjamin
linked information resource: Embracing diversity in the 5-HT neuronal system.

Authorship 1146682
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author rank in publication: 2
linked author: Okaty, Benjamin
linked information resource: Molecular Profiling Defines Evolutionarily Conserved Transcription Factor Signatures of Major Vestibulospinal Neuron Groups.

Molecular Profiling Defines Evolutionarily Conserved Transcription Factor Signatures of Major Vestibulospinal Neuron Groups.
PubMed Identifier: 30899776
author list: Lunde A, Okaty BW, Dymecki SM, Glover JC
published in: eNeuro
information resource reference: Molecular Profiling Defines Evolutionarily Conserved Transcription Factor Signatures of Major Vestibulospinal Neuron Groups. eNeuro. 2019 Jan-Feb; 6(1).
journal title abbreviation: eNeuro
publication date: 2019-02-27T00:00:00
year: 2019
type: Academic Article
type: Article
type: Document
type: Information Resource

Embracing diversity in the 5-HT neuronal system.
PubMed Identifier: 30948838
author list: Okaty BW, Commons KG, Dymecki SM
published in: Nature reviews. Neuroscience
information resource reference: Embracing diversity in the 5-HT neuronal system. Nat Rev Neurosci. 2019 07; 20(7):397-424.
journal title abbreviation: Nat Rev Neurosci
publication date: 2019-07-01T00:00:00
year: 2019
type: Academic Article
type: Article
type: Document
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Neurons
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number of authors: 2367
number of publications: 9925
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Neocortex
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number of authors: 205
number of publications: 419
uniqueness weight: 0.747384
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Neurobiology
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Boston Children's Hospital
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Harvard Medical School
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Massachusetts General Hospital
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Kinney, Hannah
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Hyman, Bradley
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Sabatini, Bernardo
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Gorman, Mark
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Haynes, Robin
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Alekseenko, Olga
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person in primary position: Research Associate in Genetics
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Dymecki, Susan
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person in primary position: George Fabyan Professor of Genetics in the Field of Comparative Pathology
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Vargas, Sara
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Authorship 1165551
type: Authorship
author rank in publication: 3
linked author: Okaty, Benjamin
linked information resource: Serotonergic Modulation of Aggression in Drosophila Involves GABAergic and Cholinergic Opposing Pathways.

selected publications
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Serotonergic Modulation of Aggression in Drosophila Involves GABAergic and Cholinergic Opposing Pathways.
PubMed Identifier: 31231050
author list: Alekseyenko OV, Chan YB, Okaty BW, Chang Y, Dymecki SM, Kravitz EA
published in: Current biology : CB
information resource reference: Serotonergic Modulation of Aggression in Drosophila Involves GABAergic and Cholinergic Opposing Pathways. Curr Biol. 2019 07 08; 29(13):2145-2156.e5.
journal title abbreviation: Curr Biol
publication date: 2019-06-20T00:00:00
year: 2019
type: Academic Article
type: Article
type: Document
type: Information Resource

Research Associate in Genetics
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position in organization: Harvard Medical School

John B. Penney, Jr. Professor of Neurology
is primary position: true
position in department: Neurology
position in division: https://connects.catalyst.harvard.edu/Profiles/profile/1229413
sort order: 1
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HR job title: John B. Penney, Jr. Professor of Neurology
position in organization: Massachusetts General Hospital

Authorship 1259159
type: Authorship
author rank in publication: 1
linked author: Okaty, Benjamin
linked information resource: A single-cell transcriptomic and anatomic atlas of mouse dorsal raphe Pet1 neurons.

A single-cell transcriptomic and anatomic atlas of mouse dorsal raphe Pet1 neurons.
PubMed Identifier: 32568072
author list: Okaty BW, Sturrock N, Escobedo Lozoya Y, Chang Y, Senft RA, Lyon KA, Alekseyenko OV, Dymecki SM
published in: eLife
information resource reference: A single-cell transcriptomic and anatomic atlas of mouse dorsal raphe Pet1 neurons. Elife. 2020 06 22; 9.
journal title abbreviation: Elife
publication date: 2020-06-22T00:00:00
year: 2020
type: Academic Article
type: Article
type: Document
type: Information Resource

Authorship 1355505
type: Authorship
author rank in publication: 7
linked author: Okaty, Benjamin
linked information resource: Altered oligodendroglia and astroglia in chronic traumatic encephalopathy.

Altered oligodendroglia and astroglia in chronic traumatic encephalopathy.
PubMed Identifier: 34019156
author list: Chancellor KB, Chancellor SE, Duke-Cohan JE, Huber BR, Stein TD, Alvarez VE, Okaty BW, Dymecki SM, McKee AC
published in: Acta neuropathologica
information resource reference: Altered oligodendroglia and astroglia in chronic traumatic encephalopathy. Acta Neuropathol. 2021 08; 142(2):295-321.
journal title abbreviation: Acta Neuropathol
publication date: 2021-05-21T00:00:00
year: 2021
type: Academic Article
type: Article
type: Document
type: Information Resource

Research Scientist in Genetics
is primary position: true
position in department: Genetics
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HR job title: Research Scientist in Genetics
position in organization: Harvard Medical School

Authorship 1625879
type: Authorship
author rank in publication: 2
linked author: Okaty, Benjamin
linked information resource: Multiomic Analysis of Neuroinflammation and Occult Infection in Sudden Infant Death Syndrome.

Multiomic Analysis of Neuroinflammation and Occult Infection in Sudden Infant Death Syndrome.
PubMed Identifier: 38285456
author list: Ramachandran PS, Okaty BW, Riehs M, Wapniarski A, Hershey D, Harb H, Zia M, Haas EA, Alexandrescu S, Sleeper LA, Vargas SO, Gorman MP, Campman S, Mena OJ, Levert K, Hyland K, Goldstein RD, Wilson MR, Haynes RL
published in: JAMA neurology
information resource reference: Multiomic Analysis of Neuroinflammation and Occult Infection in Sudden Infant Death Syndrome. JAMA Neurol. 2024 03 01; 81(3):240-247.
journal title abbreviation: JAMA Neurol
publication date: 2024-03-01T00:00:00
year: 2024
type: Academic Article
type: Article
type: Document
type: Information Resource

Authorship 1627631
type: Authorship
author rank in publication: 4
linked author: Okaty, Benjamin
linked information resource: https://connects.catalyst.harvard.edu/Profiles/profile/231562571

https://connects.catalyst.harvard.edu/Profiles/profile/231562571
PubMed Identifier: 38323418
author list: Cummings KJ, Leiter JC, Trachtenberg FL, Okaty BW, Darnall RA, Haas EA, Harper RM, Nattie EE, Krous HF, Mena OJ, Richerson GB, Dymecki SM, Kinney HC, Haynes RL
published in: Journal of neuropathology and experimental neurology
information resource reference: Altered 5-HT2A/C receptor binding in the medulla oblongata in the sudden infant death syndrome (SIDS): Part II. Age-associated alterations in serotonin receptor binding profiles within medullary nuclei supporting cardiorespiratory homeostasis. J Neuropathol Exp Neurol. 2024 02 21; 83(3):144-160.
journal title abbreviation: J Neuropathol Exp Neurol
publication date: 2024-02-21T00:00:00
year: 2024
type: Academic Article
type: Article
type: Document
type: Information Resource
label: Altered 5-HT2A/C receptor binding in the medulla oblongata in the sudden infant death syndrome (SIDS): Part II. Age-associated alterations in serotonin receptor binding profiles within medullary nuclei supporting cardiorespiratory homeostasis.

George Fabyan Professor of Genetics in the Field of Comparative Pathology
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HR job title: George Fabyan Professor of Genetics in the Field of Comparative Pathology
position in organization: Harvard Medical School

Professor of Neurobiology
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HR job title: Professor of Neurobiology
position in organization: Harvard Medical School

Professor of Pathology, Emerita
is primary position: true
position in department: Emeritus
position in division: https://connects.catalyst.harvard.edu/Profiles/profile/1229413
sort order: 1
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HR job title: Professor of Pathology, Emerita
position in organization: Harvard Medical School

Authorship 392779
type: Authorship
author rank in publication: 1
linked author: Okaty, Benjamin
linked information resource: Cell type-specific transcriptomics in the brain.

Authorship 190325
type: Authorship
author rank in publication: 1
linked author: Okaty, Benjamin
linked information resource: Transcriptional and electrophysiological maturation of neocortical fast-spiking GABAergic interneurons.

Authorship 714274
type: Authorship
author rank in publication: 3
linked author: Okaty, Benjamin
linked information resource: Cell-type-based model explaining coexpression patterns of genes in the brain.

Cell-type-based model explaining coexpression patterns of genes in the brain.
PubMed Identifier: 24706869
author list: Grange P, Bohland JW, Okaty BW, Sugino K, Bokil H, Nelson SB, Ng L, Hawrylycz M, Mitra PP
published in: Proceedings of the National Academy of Sciences of the United States of America
information resource reference: Cell-type-based model explaining coexpression patterns of genes in the brain. Proc Natl Acad Sci U S A. 2014 Apr 08; 111(14):5397-402.
journal title abbreviation: Proc Natl Acad Sci U S A
publication date: 2014-03-25T00:00:00
year: 2014
type: Academic Article
type: Article
type: Document
type: Information Resource

Professor of Pathology
is primary position: true
position in department: Pathology
position in division: https://connects.catalyst.harvard.edu/Profiles/profile/1229413
sort order: 1
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HR job title: Professor of Pathology
position in organization: Boston Children's Hospital

Assistant Professor of Pathology
is primary position: true
position in department: Pathology
position in division: https://connects.catalyst.harvard.edu/Profiles/profile/1229413
sort order: 1
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HR job title: Assistant Professor of Pathology
position in organization: Boston Children's Hospital

Alice and Rodman W. Moorhead III Professor of Neurobiology
is primary position: true
position in department: Neurobiology
position in division: https://connects.catalyst.harvard.edu/Profiles/profile/1229413
sort order: 1
type: Position
HR job title: Alice and Rodman W. Moorhead III Professor of Neurobiology
position in organization: Harvard Medical School

Associate Professor of Neurology
is primary position: true
position in department: Neurology
position in division: https://connects.catalyst.harvard.edu/Profiles/profile/1229413
sort order: 1
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HR job title: Associate Professor of Neurology
position in organization: Boston Children's Hospital

Authorship 544500
type: Authorship
author rank in publication: 2
linked author: Okaty, Benjamin
linked information resource: Activity-dependent changes in the firing properties of neocortical fast-spiking interneurons in the absence of large changes in gene expression.

Authorship 758567
type: Authorship
author rank in publication: 3
linked author: Okaty, Benjamin
linked information resource: Cell-type-specific repression by methyl-CpG-binding protein 2 is biased toward long genes.

Cell-type-specific repression by methyl-CpG-binding protein 2 is biased toward long genes.
PubMed Identifier: 25232122
author list: Sugino K, Hempel CM, Okaty BW, Arnson HA, Kato S, Dani VS, Nelson SB
published in: The Journal of neuroscience : the official journal of the Society for Neuroscience
information resource reference: Cell-type-specific repression by methyl-CpG-binding protein 2 is biased toward long genes. J Neurosci. 2014 Sep 17; 34(38):12877-83.
journal title abbreviation: J Neurosci
publication date: 2014-09-17T00:00:00
year: 2014
type: Academic Article
type: Article
type: Document
type: Information Resource

Authorship 401995
type: Authorship
author rank in publication: 1
linked author: Okaty, Benjamin
linked information resource: A quantitative comparison of cell-type-specific microarray gene expression profiling methods in the mouse brain.

Authorship 312790
type: Authorship
author rank in publication: 2
linked author: Okaty, Benjamin
linked information resource: Region-specific spike-frequency acceleration in layer 5 pyramidal neurons mediated by Kv1 subunits.

Authorship 846814
type: Authorship
author rank in publication: 1
linked author: Okaty, Benjamin
linked information resource: Multi-Scale Molecular Deconstruction of the Serotonin Neuron System.

Multi-Scale Molecular Deconstruction of the Serotonin Neuron System.
PubMed Identifier: 26549332
author list: Okaty BW, Freret ME, Rood BD, Brust RD, Hennessy ML, deBairos D, Kim JC, Cook MN, Dymecki SM
published in: Neuron
information resource reference: Multi-Scale Molecular Deconstruction of the Serotonin Neuron System. Neuron. 2015 Nov 18; 88(4):774-91.
journal title abbreviation: Neuron
publication date: 2015-11-05T00:00:00
year: 2015
type: Academic Article
type: Article
type: Document
type: Information Resource

Assistant Professor
sort order: 2
type: Faculty Rank

Associate Professor
sort order: 1
type: Faculty Rank

Full Professor
sort order: 0
type: Faculty Rank

Other Faculty
sort order: 5
type: Faculty Rank

77 Avenue Louis Pasteur
type: Address
address line 1: Harvard Medical School
address line 2: Genetics, NRB 358
address line 3: 77 Avenue Louis Pasteur
city: Boston
postal code: 02115
state or province: MA

Fishell, Gord
eCommons Login: GJF11
first name: Gord
last name: Fishell
full name: Gord Fishell, Ph.D.
has faculty rank: Full Professor
Person ID: 152093
person in primary position: Professor of Neurobiology
type: Agent
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preferred title: Professor of Neurobiology

Authorship 911914
type: Authorship
author rank in publication: 10
linked author: Okaty, Benjamin
linked information resource: Upregulation of µ3A Drives Homeostatic Plasticity by Rerouting AMPAR into the Recycling Endosomal Pathway.

Upregulation of µ3A Drives Homeostatic Plasticity by Rerouting AMPAR into the Recycling Endosomal Pathway.
PubMed Identifier: 27568566
author list: Steinmetz CC, Tatavarty V, Sugino K, Shima Y, Joseph A, Lin H, Rutlin M, Lambo M, Hempel CM, Okaty BW, Paradis S, Nelson SB, Turrigiano GG
published in: Cell reports
information resource reference: Upregulation of µ3A Drives Homeostatic Plasticity by Rerouting AMPAR into the Recycling Endosomal Pathway. Cell Rep. 2016 09 06; 16(10):2711-2722.
journal title abbreviation: Cell Rep
publication date: 2016-08-25T00:00:00
year: 2016
type: Academic Article
type: Article
type: Document
type: Information Resource

Authorship 931507
type: Authorship
author rank in publication: 3
linked author: Okaty, Benjamin
linked information resource: Identification of Serotonergic Neuronal Modules that Affect Aggressive Behavior.

Identification of Serotonergic Neuronal Modules that Affect Aggressive Behavior.
PubMed Identifier: 27851959
author list: Niederkofler V, Asher TE, Okaty BW, Rood BD, Narayan A, Hwa LS, Beck SG, Miczek KA, Dymecki SM
published in: Cell reports
information resource reference: Identification of Serotonergic Neuronal Modules that Affect Aggressive Behavior. Cell Rep. 2016 11 15; 17(8):1934-1949.
journal title abbreviation: Cell Rep
publication date: 2016-11-15T00:00:00
year: 2016
type: Academic Article
type: Article
type: Document
type: Information Resource

Activity-dependent changes in the firing properties of neocortical fast-spiking interneurons in the absence of large changes in gene expression.
PubMed Identifier: 21154910
author list: Miller MN, Okaty BW, Kato S, Nelson SB
published in: Developmental neurobiology
information resource reference: Activity-dependent changes in the firing properties of neocortical fast-spiking interneurons in the absence of large changes in gene expression. Dev Neurobiol. 2011 Jan 01; 71(1):62-70.
journal title abbreviation: Dev Neurobiol
publication date: 2011-01-01T00:00:00
year: 2011
type: Academic Article
type: Article
type: Document
type: Information Resource

Cell type-specific transcriptomics in the brain.
PubMed Identifier: 21562254
author list: Okaty BW, Sugino K, Nelson SB
published in: The Journal of neuroscience : the official journal of the Society for Neuroscience
information resource reference: Cell type-specific transcriptomics in the brain. J Neurosci. 2011 May 11; 31(19):6939-43.
journal title abbreviation: J Neurosci
publication date: 2011-05-11T00:00:00
year: 2011
type: Academic Article
type: Article
type: Document
type: Information Resource

Transcriptional and electrophysiological maturation of neocortical fast-spiking GABAergic interneurons.
PubMed Identifier: 19474331
author list: Okaty BW, Miller MN, Sugino K, Hempel CM, Nelson SB
published in: The Journal of neuroscience : the official journal of the Society for Neuroscience
information resource reference: Transcriptional and electrophysiological maturation of neocortical fast-spiking GABAergic interneurons. J Neurosci. 2009 May 27; 29(21):7040-52.
journal title abbreviation: J Neurosci
publication date: 2009-05-27T00:00:00
year: 2009
type: Academic Article
type: Article
type: Document
type: Information Resource

Region-specific spike-frequency acceleration in layer 5 pyramidal neurons mediated by Kv1 subunits.
PubMed Identifier: 19091962
author list: Miller MN, Okaty BW, Nelson SB
published in: The Journal of neuroscience : the official journal of the Society for Neuroscience
information resource reference: Region-specific spike-frequency acceleration in layer 5 pyramidal neurons mediated by Kv1 subunits. J Neurosci. 2008 Dec 17; 28(51):13716-26.
journal title abbreviation: J Neurosci
publication date: 2008-12-17T00:00:00
year: 2008
type: Academic Article
type: Article
type: Document
type: Information Resource