Moqtaderi, Zarmik
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first name: Zarmik
last name: Moqtaderi
coauthor of: Struhl, Kevin
coauthor of: Geisberg, Joseph
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coauthor of: Bernstein, Bradley
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full name: Zarmik Moqtaderi, D.E.A., Ph.D.
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selected publications: Authorship 1699052
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selected publications: Authorship 153027
selected publications: Authorship 65415
research areas: Saccharomyces cerevisiae
research areas: RNA, Fungal
research areas: Yeasts

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Authorship 115355
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linked author: Moqtaderi, Zarmik
linked information resource: Expanding the repertoire of plasmids for PCR-mediated epitope tagging in yeast.

Intrinsic histone-DNA interactions are not the major determinant of nucleosome positions in vivo.
PubMed Identifier: 19620965
author list: Zhang Y, Moqtaderi Z, Rattner BP, Euskirchen G, Snyder M, Kadonaga JT, Liu XS, Struhl K
published in: Nature structural & molecular biology
information resource reference: Intrinsic histone-DNA interactions are not the major determinant of nucleosome positions in vivo. Nat Struct Mol Biol. 2009 Aug; 16(8):847-52.
journal title abbreviation: Nat Struct Mol Biol
publication date: 2009-07-20T00:00:00
year: 2009
type: Academic Article
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Expanding the repertoire of plasmids for PCR-mediated epitope tagging in yeast.
PubMed Identifier: 18338317
author list: Moqtaderi Z, Struhl K
published in: Yeast (Chichester, England)
information resource reference: Expanding the repertoire of plasmids for PCR-mediated epitope tagging in yeast. Yeast. 2008 Apr; 25(4):287-92.
journal title abbreviation: Yeast
publication date: 2008-04-01T00:00:00
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linked information resource: Extensive Structural Differences of Closely Related 3' mRNA Isoforms: Links to Pab1 Binding and mRNA Stability.

Extensive Structural Differences of Closely Related 3' mRNA Isoforms: Links to Pab1 Binding and mRNA Stability.
PubMed Identifier: 30318446
author list: Moqtaderi Z, Geisberg JV, Struhl K
published in: Molecular cell
information resource reference: Extensive Structural Differences of Closely Related 3' mRNA Isoforms: Links to Pab1 Binding and mRNA Stability. Mol Cell. 2018 12 06; 72(5):849-861.e6.
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Nucleosome depletion at yeast terminators is not intrinsic and can occur by a transcriptional mechanism linked to 3'-end formation.
PubMed Identifier: 20921369
author list: Fan X, Moqtaderi Z, Jin Y, Zhang Y, Liu XS, Struhl K
published in: Proceedings of the National Academy of Sciences of the United States of America
information resource reference: Nucleosome depletion at yeast terminators is not intrinsic and can occur by a transcriptional mechanism linked to 3'-end formation. Proc Natl Acad Sci U S A. 2010 Oct 19; 107(42):17945-50.
journal title abbreviation: Proc Natl Acad Sci U S A
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Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.
PubMed Identifier: 17571346
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published in: Nature
information resource reference: Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature. 2007 Jun 14; 447(7146):799-816.
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Chromatin immunoprecipitation for determining the association of proteins with specific genomic sequences in vivo.
PubMed Identifier: 18265358
author list: Aparicio O, Geisberg JV, Sekinger E, Yang A, Moqtaderi Z, Struhl K
published in: Current protocols in molecular biology
information resource reference: Chromatin immunoprecipitation for determining the association of proteins with specific genomic sequences in vivo. Curr Protoc Mol Biol. 2005 Feb; Chapter 21:Unit 21.3.
journal title abbreviation: Curr Protoc Mol Biol
publication date: 2005-02-01T00:00:00
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Eaf3 regulates the global pattern of histone acetylation in Saccharomyces cerevisiae.
PubMed Identifier: 14701747
author list: Reid JL, Moqtaderi Z, Struhl K
published in: Molecular and cellular biology
information resource reference: Eaf3 regulates the global pattern of histone acetylation in Saccharomyces cerevisiae. Mol Cell Biol. 2004 Jan; 24(2):757-64.
journal title abbreviation: Mol Cell Biol
publication date: 2004-01-01T00:00:00
year: 2004
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linked information resource: The TAFs in the HAT.

RNA, Fungal
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linked information resource: Iwr1 protein is important for preinitiation complex formation by all three nuclear RNA polymerases in Saccharomyces cerevisiae.

RNA, Messenger
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Yeasts
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Polyadenylation
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Bernstein, Bradley
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Geisberg, Joseph
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Gygi, Steven
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Clardy, Jon
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linked information resource: Yeast homologues of higher eukaryotic TFIID subunits.

Winston, Fred
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Park, Peter
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linked information resource: Protein Binding to mRNA 3' Isoforms.

Authorship 1190657
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linked information resource: Probing In Vivo Structure of Individual mRNA 3' Isoforms Using Dimethyl Sulfate.

Protein Binding to mRNA 3' Isoforms.
PubMed Identifier: 31503412
author list: Geisberg JV, Moqtaderi Z
published in: Current protocols in molecular biology
information resource reference: Protein Binding to mRNA 3' Isoforms. Curr Protoc Mol Biol. 2019 09; 128(1):e101.
journal title abbreviation: Curr Protoc Mol Biol
publication date: 2019-09-01T00:00:00
year: 2019
type: Academic Article
type: Article
type: Document
type: Information Resource

Probing In Vivo Structure of Individual mRNA 3' Isoforms Using Dimethyl Sulfate.
PubMed Identifier: 31503415
author list: Moqtaderi Z, Geisberg JV
published in: Current protocols in molecular biology
information resource reference: Probing In Vivo Structure of Individual mRNA 3' Isoforms Using Dimethyl Sulfate. Curr Protoc Mol Biol. 2019 09; 128(1):e99.
journal title abbreviation: Curr Protoc Mol Biol
publication date: 2019-09-01T00:00:00
year: 2019
type: Academic Article
type: Article
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John Emory Andrus Professor of Genetics
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Authorship 130436
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linked author: Moqtaderi, Zarmik
linked information resource: Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.

Authorship 162771
type: Authorship
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linked author: Moqtaderi, Zarmik
linked information resource: Chromatin immunoprecipitation for determining the association of proteins with specific genomic sequences in vivo.

Professor of Cell Biology
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linked information resource: The transcriptional elongation rate regulates alternative polyadenylation in yeast.

The transcriptional elongation rate regulates alternative polyadenylation in yeast.
PubMed Identifier: 32845240
author list: Geisberg JV, Moqtaderi Z, Struhl K
published in: eLife
information resource reference: The transcriptional elongation rate regulates alternative polyadenylation in yeast. Elife. 2020 08 26; 9.
journal title abbreviation: Elife
publication date: 2020-08-26T00:00:00
year: 2020
type: Academic Article
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Instructor in Biological Chemistry and Molecular Pharmacology
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Harold T. White Professor of Biological Chemistry and Molecular Pharmacology
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BCMP
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Authorship 164199
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author rank in publication: 1
linked author: Moqtaderi, Zarmik
linked information resource: Genome-wide occupancy profile of the RNA polymerase III machinery in Saccharomyces cerevisiae reveals loci with incomplete transcription complexes.

Authorship 1403656
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linked author: Moqtaderi, Zarmik
linked information resource: Genome-wide oscillations in G + C density and sequence conservation.

Genome-wide oscillations in G + C density and sequence conservation.
PubMed Identifier: 34649930
author list: Moqtaderi Z, Brown S, Bender W
published in: Genome research
information resource reference: Genome-wide oscillations in G + C density and sequence conservation. Genome Res. 2021 11; 31(11):2050-2057.
journal title abbreviation: Genome Res
publication date: 2021-10-14T00:00:00
year: 2021
type: Academic Article
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type: Information Resource

A compensatory link between cleavage/polyadenylation and mRNA turnover regulates steady-state mRNA levels in yeast.
PubMed Identifier: 35058367
author list: Moqtaderi Z, Geisberg JV, Struhl K
published in: Proceedings of the National Academy of Sciences of the United States of America
information resource reference: A compensatory link between cleavage/polyadenylation and mRNA turnover regulates steady-state mRNA levels in yeast. Proc Natl Acad Sci U S A. 2022 01 25; 119(4).
journal title abbreviation: Proc Natl Acad Sci U S A
publication date: 2022-01-25T00:00:00
year: 2022
type: Academic Article
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type: Information Resource

Authorship 1427103
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linked information resource: A compensatory link between cleavage/polyadenylation and mRNA turnover regulates steady-state mRNA levels in yeast.

Director, HMS Bio-NMR Core
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linked information resource: 3' Untranslated Regions Are Modular Entities That Determine Polyadenylation Profiles.

3' Untranslated Regions Are Modular Entities That Determine Polyadenylation Profiles.
PubMed Identifier: 35972270
author list: Lui KH, Geisberg JV, Moqtaderi Z, Struhl K
published in: Molecular and cellular biology
information resource reference: 3' Untranslated Regions Are Modular Entities That Determine Polyadenylation Profiles. Mol Cell Biol. 2022 09 15; 42(9):e0024422.
journal title abbreviation: Mol Cell Biol
publication date: 2022-08-16T00:00:00
year: 2022
type: Academic Article
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type: Information Resource

Authorship 1505852
type: Authorship
author rank in publication: 2
linked author: Moqtaderi, Zarmik
linked information resource: Nucleotide-level linkage of transcriptional elongation and polyadenylation.

Nucleotide-level linkage of transcriptional elongation and polyadenylation.
PubMed Identifier: 36421680
author list: Geisberg JV, Moqtaderi Z, Fong N, Erickson B, Bentley DL, Struhl K
published in: eLife
information resource reference: Nucleotide-level linkage of transcriptional elongation and polyadenylation. Elife. 2022 11 24; 11.
journal title abbreviation: Elife
publication date: 2022-11-24T00:00:00
year: 2022
type: Academic Article
type: Article
type: Document
type: Information Resource

Authorship 236773
type: Authorship
author rank in publication: 6
linked author: Moqtaderi, Zarmik
linked information resource: SIRT7 links H3K18 deacetylation to maintenance of oncogenic transformation.

Research Associate in Biological Chemistry and Molecular Pharmacology
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position in department: BCMP
position in division: https://connects.catalyst.harvard.edu/Profiles/profile/1229413
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type: Position
HR job title: Research Associate in Biological Chemistry and Molecular Pharmacology
position in organization: Harvard Medical School

Hamilton Kuhn Professor of Biological Chemistry and Molecular Pharmacology
is primary position: true
position in department: BCMP
position in division: https://connects.catalyst.harvard.edu/Profiles/profile/1229413
sort order: 1
type: Position
HR job title: Hamilton Kuhn Professor of Biological Chemistry and Molecular Pharmacology
position in organization: Harvard Medical School

Authorship 1551520
type: Authorship
author rank in publication: 2
linked author: Moqtaderi, Zarmik
linked information resource: Condition-specific 3' mRNA isoform half-lives and stability elements in yeast.

Condition-specific 3' mRNA isoform half-lives and stability elements in yeast.
PubMed Identifier: 37094136
author list: Geisberg JV, Moqtaderi Z, Struhl K
published in: Proceedings of the National Academy of Sciences of the United States of America
information resource reference: Condition-specific 3' mRNA isoform half-lives and stability elements in yeast. Proc Natl Acad Sci U S A. 2023 05 02; 120(18):e2301117120.
journal title abbreviation: Proc Natl Acad Sci U S A
publication date: 2023-04-24T00:00:00
year: 2023
type: Academic Article
type: Article
type: Document
type: Information Resource

Authorship 317781
type: Authorship
author rank in publication: 1
linked author: Moqtaderi, Zarmik
linked information resource: Genomic binding profiles of functionally distinct RNA polymerase III transcription complexes in human cells.

Christopher T. Walsh, PhD Professor of Biological Chemistry and Molecular Pharmacology
is primary position: true
position in department: BCMP
position in division: https://connects.catalyst.harvard.edu/Profiles/profile/1229413
sort order: 1
type: Position
HR job title: Christopher T. Walsh, PhD Professor of Biological Chemistry and Molecular Pharmacology
position in organization: Harvard Medical School

Authorship 1582863
type: Authorship
author rank in publication: 3
linked author: Moqtaderi, Zarmik
linked information resource: Elongation rate of RNA polymerase II affects pausing patterns across 3' UTRs.

Elongation rate of RNA polymerase II affects pausing patterns across 3' UTRs.
PubMed Identifier: 37748648
author list: Khitun A, Brion C, Moqtaderi Z, Geisberg JV, Churchman LS, Struhl K
published in: The Journal of biological chemistry
information resource reference: Elongation rate of RNA polymerase II affects pausing patterns across 3' UTRs. J Biol Chem. 2023 11; 299(11):105289.
journal title abbreviation: J Biol Chem
publication date: 2023-09-24T00:00:00
year: 2023
type: Academic Article
type: Article
type: Document
type: Information Resource

Authorship 1653064
type: Authorship
author rank in publication: 2
linked author: Moqtaderi, Zarmik
linked information resource: Chromatin regulates alternative polyadenylation via the RNA polymerase II elongation rate.

Chromatin regulates alternative polyadenylation via the RNA polymerase II elongation rate.
PubMed Identifier: 38748572
author list: Geisberg JV, Moqtaderi Z, Struhl K
published in: Proceedings of the National Academy of Sciences of the United States of America
information resource reference: Chromatin regulates alternative polyadenylation via the RNA polymerase II elongation rate. Proc Natl Acad Sci U S A. 2024 May 21; 121(21):e2405827121.
journal title abbreviation: Proc Natl Acad Sci U S A
publication date: 2024-05-15T00:00:00
year: 2024
type: Academic Article
type: Article
type: Document
type: Information Resource

David Wesley Gaiser Professor of Biological Chemistry and Molecular Pharmacology
is primary position: true
position in department: BCMP
position in division: https://connects.catalyst.harvard.edu/Profiles/profile/1229413
sort order: 1
type: Position
HR job title: David Wesley Gaiser Professor of Biological Chemistry and Molecular Pharmacology
position in organization: Harvard Medical School

Professor of Pathology
is primary position: true
position in department: Pathology
position in division: https://connects.catalyst.harvard.edu/Profiles/profile/1229413
sort order: 1
type: Position
HR job title: Professor of Pathology
position in organization: Dana-Farber Cancer Institute

Professor of Biomedical Informatics
is primary position: true
position in department: Biomedical Informatics
position in division: https://connects.catalyst.harvard.edu/Profiles/profile/1229413
sort order: 1
type: Position
HR job title: Professor of Biomedical Informatics
position in organization: Harvard Medical School

Authorship 668412
type: Authorship
author rank in publication: 1
linked author: Moqtaderi, Zarmik
linked information resource: Species-specific factors mediate extensive heterogeneity of mRNA 3' ends in yeasts.

Species-specific factors mediate extensive heterogeneity of mRNA 3' ends in yeasts.
PubMed Identifier: 23776204
author list: Moqtaderi Z, Geisberg JV, Jin Y, Fan X, Struhl K
published in: Proceedings of the National Academy of Sciences of the United States of America
information resource reference: Species-specific factors mediate extensive heterogeneity of mRNA 3' ends in yeasts. Proc Natl Acad Sci U S A. 2013 Jul 02; 110(27):11073-8.
journal title abbreviation: Proc Natl Acad Sci U S A
publication date: 2013-06-17T00:00:00
year: 2013
type: Academic Article
type: Article
type: Document
type: Information Resource

Authorship 1699052
type: Authorship
author rank in publication: 2
linked author: Moqtaderi, Zarmik
linked information resource: Location of polyadenylation sites within 3' untranslated regions is linked to biological function in yeast.

Location of polyadenylation sites within 3' untranslated regions is linked to biological function in yeast.
PubMed Identifier: 39383179
author list: Geisberg JV, Moqtaderi Z, Struhl K
published in: Genetics
information resource reference: Location of polyadenylation sites within 3' untranslated regions is linked to biological function in yeast. Genetics. 2024 10 09.
journal title abbreviation: Genetics
publication date: 2024-10-09T00:00:00
year: 2024
type: Academic Article
type: Article
type: Document
type: Information Resource

Authorship 270847
type: Authorship
author rank in publication: 1
linked author: Moqtaderi, Zarmik
linked information resource: The histone H3-like TAF is broadly required for transcription in yeast.

Authorship 201433
type: Authorship
author rank in publication: 3
linked author: Moqtaderi, Zarmik
linked information resource: Close association of RNA polymerase II and many transcription factors with Pol III genes.

Authorship 24999
type: Authorship
author rank in publication: 2
linked author: Moqtaderi, Zarmik
linked information resource: TFIIA has activator-dependent and core promoter functions in vivo.

Authorship 267289
type: Authorship
author rank in publication: 3
linked author: Moqtaderi, Zarmik
linked information resource: Multiplex Illumina sequencing using DNA barcoding.

Authorship 383585
type: Authorship
author rank in publication: 3
linked author: Moqtaderi, Zarmik
linked information resource: Manipulation of cloned yeast DNA.

Authorship 724130
type: Authorship
author rank in publication: 1
linked author: Moqtaderi, Zarmik
linked information resource: Construction of mutant alleles in Saccharomyces cerevisiae without cloning: overview and the delitto perfetto method.

Authorship 724172
type: Authorship
author rank in publication: 2
linked author: Moqtaderi, Zarmik
linked information resource: Global analysis of mRNA isoform half-lives reveals stabilizing and destabilizing elements in yeast.

Construction of mutant alleles in Saccharomyces cerevisiae without cloning: overview and the delitto perfetto method.
PubMed Identifier: 24510296
author list: Moqtaderi Z, Geisberg JV
published in: Current protocols in molecular biology
information resource reference: Construction of mutant alleles in Saccharomyces cerevisiae without cloning: overview and the delitto perfetto method. Curr Protoc Mol Biol. 2013 Oct 11; 104:13.10C.1-13.10C.17.
journal title abbreviation: Curr Protoc Mol Biol
publication date: 2013-10-11T00:00:00
year: 2013
type: Academic Article
type: Article
type: Document
type: Information Resource

Global analysis of mRNA isoform half-lives reveals stabilizing and destabilizing elements in yeast.
PubMed Identifier: 24529382
author list: Geisberg JV, Moqtaderi Z, Fan X, Ozsolak F, Struhl K
published in: Cell
information resource reference: Global analysis of mRNA isoform half-lives reveals stabilizing and destabilizing elements in yeast. Cell. 2014 Feb 13; 156(4):812-24.
journal title abbreviation: Cell
publication date: 2014-02-13T00:00:00
year: 2014
type: Academic Article
type: Article
type: Document
type: Information Resource

Authorship 250717
type: Authorship
author rank in publication: 2
linked author: Moqtaderi, Zarmik
linked information resource: Activator-specific recruitment of TFIID and regulation of ribosomal protein genes in yeast.

Professor of Biological Chemistry and Molecular Pharmacology
is primary position: true
position in department: BCMP
position in division: https://connects.catalyst.harvard.edu/Profiles/profile/1229413
sort order: 1
type: Position
HR job title: Professor of Biological Chemistry and Molecular Pharmacology
position in organization: Harvard Medical School

Authorship 226261
type: Authorship
author rank in publication: 1
linked author: Moqtaderi, Zarmik
linked information resource: Defining in vivo targets of nuclear proteins by chromatin immunoprecipitation and microarray analysis.

Authorship 288166
type: Authorship
author rank in publication: 2
linked author: Moqtaderi, Zarmik
linked information resource: Intrinsic histone-DNA interactions and low nucleosome density are important for preferential accessibility of promoter regions in yeast.

Authorship 489858
type: Authorship
author rank in publication: 40
linked author: Moqtaderi, Zarmik
linked information resource: Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets.

Authorship 5681
type: Authorship
author rank in publication: 1
linked author: Moqtaderi, Zarmik
linked information resource: An integrated encyclopedia of DNA elements in the human genome.

Authorship 65415
type: Authorship
author rank in publication: 1
linked author: Moqtaderi, Zarmik
linked information resource: TBP-associated factors are not generally required for transcriptional activation in yeast.

Authorship 453747
type: Authorship
author rank in publication: 2
linked author: Moqtaderi, Zarmik
linked information resource: Eaf3 regulates the global pattern of histone acetylation in Saccharomyces cerevisiae.

Authorship 68984
type: Authorship
author rank in publication: 2
linked author: Moqtaderi, Zarmik
linked information resource: Intrinsic histone-DNA interactions are not the major determinant of nucleosome positions in vivo.

Authorship 273125
type: Authorship
author rank in publication: 5
linked author: Moqtaderi, Zarmik
linked information resource: Mapping accessible chromatin regions using Sono-Seq.

Authorship 799691
type: Authorship
author rank in publication: 3
linked author: Moqtaderi, Zarmik
linked information resource: Mapping 3' mRNA isoforms on a genomic scale.

Mapping 3' mRNA isoforms on a genomic scale.
PubMed Identifier: 25827089
author list: Jin Y, Geisberg JV, Moqtaderi Z, Ji Z, Hoque M, Tian B, Struhl K
published in: Current protocols in molecular biology
information resource reference: Mapping 3' mRNA isoforms on a genomic scale. Curr Protoc Mol Biol. 2015 Apr 01; 110:4.23.1-4.23.17.
journal title abbreviation: Curr Protoc Mol Biol
publication date: 2015-04-01T00:00:00
year: 2015
type: Academic Article
type: Article
type: Document
type: Information Resource

Biomedical Informatics
type: Department
type: Organization

Authorship 840568
type: Authorship
author rank in publication: 2
linked author: Moqtaderi, Zarmik
linked information resource: Genome-Wide Study of mRNA Isoform Half-Lives.

Genome-Wide Study of mRNA Isoform Half-Lives.
PubMed Identifier: 26463393
author list: Geisberg JV, Moqtaderi Z
published in: Methods in molecular biology (Clifton, N.J.)
information resource reference: Genome-Wide Study of mRNA Isoform Half-Lives. Methods Mol Biol. 2016; 1358:317-23.
journal title abbreviation: Methods Mol Biol
publication date: 2016-01-01T00:00:00
year: 2016
type: Academic Article
type: Article
type: Document
type: Information Resource

Authorship 866457
type: Authorship
author rank in publication: 2
linked author: Moqtaderi, Zarmik
linked information resource: Evidence against a genomic code for nucleosome positioning. Reply to "Nucleosome sequence preferences influence in vivo nucleosome organization.".

Evidence against a genomic code for nucleosome positioning. Reply to "Nucleosome sequence preferences influence in vivo nucleosome organization.".
PubMed Identifier: 20683474
author list: Zhang Y, Moqtaderi Z, Rattner BP, Euskirchen G, Snyder M, Kadonaga JT, Liu XS, Struhl K
published in: Nature structural & molecular biology
information resource reference: Evidence against a genomic code for nucleosome positioning. Reply to "Nucleosome sequence preferences influence in vivo nucleosome organization.". Nat Struct Mol Biol. 2010 Aug; 17(8):920-3.
journal title abbreviation: Nat Struct Mol Biol
publication date: 2010-08-01T00:00:00
year: 2010
type: Academic Article
type: Article
type: Document
type: Information Resource

Authorship 78367
type: Authorship
author rank in publication: 2
linked author: Moqtaderi, Zarmik
linked information resource: Nucleosome depletion at yeast terminators is not intrinsic and can occur by a transcriptional mechanism linked to 3'-end formation.

Full Professor
sort order: 0
type: Faculty Rank

Instructor
sort order: 4
type: Faculty Rank

Other Faculty
sort order: 5
type: Faculty Rank

Authorship 75162
type: Authorship
author rank in publication: 5
linked author: Moqtaderi, Zarmik
linked information resource: Activation and repression mechanisms in yeast.

Authorship 528457
type: Authorship
author rank in publication: 3
linked author: Moqtaderi, Zarmik
linked information resource: High-throughput sequencing reveals a simple model of nucleosome energetics.

Authorship 921282
type: Authorship
author rank in publication: 1
linked author: Moqtaderi, Zarmik
linked information resource: Secondary structures involving the poly(A) tail and other 3' sequences are major determinants of mRNA isoform stability in yeast.

Secondary structures involving the poly(A) tail and other 3' sequences are major determinants of mRNA isoform stability in yeast.
PubMed Identifier: 25279376
author list: Moqtaderi Z, Geisberg JV, Struhl K
published in: Microbial cell (Graz, Austria)
information resource reference: Secondary structures involving the poly(A) tail and other 3' sequences are major determinants of mRNA isoform stability in yeast. Microb Cell. 2014 Apr; 1(4):137-139.
journal title abbreviation: Microb Cell
publication date: 2014-04-01T00:00:00
year: 2014
type: Academic Article
type: Article
type: Document
type: Information Resource

Authorship 389996
type: Authorship
author rank in publication: 2
linked author: Moqtaderi, Zarmik
linked information resource: Mot1 associates with transcriptionally active promoters and inhibits association of NC2 in Saccharomyces cerevisiae.

TBP-associated factors are not generally required for transcriptional activation in yeast.
PubMed Identifier: 8774887
author list: Moqtaderi Z, Bai Y, Poon D, Weil PA, Struhl K
published in: Nature
information resource reference: TBP-associated factors are not generally required for transcriptional activation in yeast. Nature. 1996 Sep 12; 383(6596):188-91.
journal title abbreviation: Nature
publication date: 1996-09-12T00:00:00
year: 1996
type: Academic Article
type: Article
type: Document
type: Information Resource

The TAFs in the HAT.
PubMed Identifier: 9674419
author list: Struhl K, Moqtaderi Z
published in: Cell
information resource reference: The TAFs in the HAT. Cell. 1998 Jul 10; 94(1):1-4.
journal title abbreviation: Cell
publication date: 1998-07-10T00:00:00
year: 1998
type: Academic Article
type: Article
type: Document
type: Information Resource

Activator-specific recruitment of TFIID and regulation of ribosomal protein genes in yeast.
PubMed Identifier: 11983173
author list: Mencía M, Moqtaderi Z, Geisberg JV, Kuras L, Struhl K
published in: Molecular cell
information resource reference: Activator-specific recruitment of TFIID and regulation of ribosomal protein genes in yeast. Mol Cell. 2002 Apr; 9(4):823-33.
journal title abbreviation: Mol Cell
publication date: 2002-04-01T00:00:00
year: 2002
type: Academic Article
type: Article
type: Document
type: Information Resource

Activation and repression mechanisms in yeast.
PubMed Identifier: 10384306
author list: Struhl K, Kadosh D, Keaveney M, Kuras L, Moqtaderi Z
published in: Cold Spring Harbor symposia on quantitative biology
information resource reference: Activation and repression mechanisms in yeast. Cold Spring Harb Symp Quant Biol. 1998; 63:413-21.
journal title abbreviation: Cold Spring Harb Symp Quant Biol
publication date: 1998-01-01T00:00:00
year: 1998
type: Academic Article
type: Article
type: Document
type: Information Resource

Genomic binding profiles of functionally distinct RNA polymerase III transcription complexes in human cells.
PubMed Identifier: 20418883
author list: Moqtaderi Z, Wang J, Raha D, White RJ, Snyder M, Weng Z, Struhl K
published in: Nature structural & molecular biology
information resource reference: Genomic binding profiles of functionally distinct RNA polymerase III transcription complexes in human cells. Nat Struct Mol Biol. 2010 May; 17(5):635-40.
journal title abbreviation: Nat Struct Mol Biol
publication date: 2010-04-25T00:00:00
year: 2010
type: Academic Article
type: Article
type: Document
type: Information Resource

Iwr1 protein is important for preinitiation complex formation by all three nuclear RNA polymerases in Saccharomyces cerevisiae.
PubMed Identifier: 21695216
author list: Esberg A, Moqtaderi Z, Fan X, Lu J, Struhl K, Byström A
published in: PloS one
information resource reference: Iwr1 protein is important for preinitiation complex formation by all three nuclear RNA polymerases in Saccharomyces cerevisiae. PLoS One. 2011; 6(6):e20829.
journal title abbreviation: PLoS One
publication date: 2011-06-10T00:00:00
year: 2011
type: Academic Article
type: Article
type: Document
type: Information Resource

Mot1 associates with transcriptionally active promoters and inhibits association of NC2 in Saccharomyces cerevisiae.
PubMed Identifier: 12417716
author list: Geisberg JV, Moqtaderi Z, Kuras L, Struhl K
published in: Molecular and cellular biology
information resource reference: Mot1 associates with transcriptionally active promoters and inhibits association of NC2 in Saccharomyces cerevisiae. Mol Cell Biol. 2002 Dec; 22(23):8122-34.
journal title abbreviation: Mol Cell Biol
publication date: 2002-12-01T00:00:00
year: 2002
type: Academic Article
type: Article
type: Document
type: Information Resource

The histone H3-like TAF is broadly required for transcription in yeast.
PubMed Identifier: 9844639
author list: Moqtaderi Z, Keaveney M, Struhl K
published in: Molecular cell
information resource reference: The histone H3-like TAF is broadly required for transcription in yeast. Mol Cell. 1998 Nov; 2(5):675-82.
journal title abbreviation: Mol Cell
publication date: 1998-11-01T00:00:00
year: 1998
type: Academic Article
type: Article
type: Document
type: Information Resource

Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets.
PubMed Identifier: 18258921
author list: Johnson DS, Li W, Gordon DB, Bhattacharjee A, Curry B, Ghosh J, Brizuela L, Carroll JS, Brown M, Flicek P, Koch CM, Dunham I, Bieda M, Xu X, Farnham PJ, Kapranov P, Nix DA, Gingeras TR, Zhang X, Holster H, Jiang N, Green RD, Song JS, McCuine SA, Anton E, Nguyen L, Trinklein ND, Ye Z, Ching K, Hawkins D, Ren B, Scacheri PC, Rozowsky J, Karpikov A, Euskirchen G, Weissman S, Gerstein M, Snyder M, Yang A, Moqtaderi Z, Hirsch H, Shulha HP, Fu Y, Weng Z, Struhl K, Myers RM, Lieb JD, Liu XS
published in: Genome research
information resource reference: Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets. Genome Res. 2008 Mar; 18(3):393-403.
journal title abbreviation: Genome Res
publication date: 2008-02-07T00:00:00
year: 2008
type: Academic Article
type: Article
type: Document
type: Information Resource

SIRT7 links H3K18 deacetylation to maintenance of oncogenic transformation.
PubMed Identifier: 22722849
author list: Barber MF, Michishita-Kioi E, Xi Y, Tasselli L, Kioi M, Moqtaderi Z, Tennen RI, Paredes S, Young NL, Chen K, Struhl K, Garcia BA, Gozani O, Li W, Chua KF
published in: Nature
information resource reference: SIRT7 links H3K18 deacetylation to maintenance of oncogenic transformation. Nature. 2012 Jul 05; 487(7405):114-8.
journal title abbreviation: Nature
publication date: 2012-07-05T00:00:00
year: 2012
type: Academic Article
type: Article
type: Document
type: Information Resource

240 Longwood Ave
type: Address
address line 1: Harvard Medical School
address line 2: Bcmp C2-355
address line 3: 240 Longwood Ave
city: Boston
postal code: 02115
state or province: MA

TFIIA has activator-dependent and core promoter functions in vivo.
PubMed Identifier: 10777519
author list: Stargell LA, Moqtaderi Z, Dorris DR, Ogg RC, Struhl K
published in: The Journal of biological chemistry
information resource reference: TFIIA has activator-dependent and core promoter functions in vivo. J Biol Chem. 2000 Apr 28; 275(17):12374-80.
journal title abbreviation: J Biol Chem
publication date: 2000-04-28T00:00:00
year: 2000
type: Academic Article
type: Article
type: Document
type: Information Resource

Genome-wide occupancy profile of the RNA polymerase III machinery in Saccharomyces cerevisiae reveals loci with incomplete transcription complexes.
PubMed Identifier: 15121834
author list: Moqtaderi Z, Struhl K
published in: Molecular and cellular biology
information resource reference: Genome-wide occupancy profile of the RNA polymerase III machinery in Saccharomyces cerevisiae reveals loci with incomplete transcription complexes. Mol Cell Biol. 2004 May; 24(10):4118-27.
journal title abbreviation: Mol Cell Biol
publication date: 2004-05-01T00:00:00
year: 2004
type: Academic Article
type: Article
type: Document
type: Information Resource

Intrinsic histone-DNA interactions and low nucleosome density are important for preferential accessibility of promoter regions in yeast.
PubMed Identifier: 15949447
author list: Sekinger EA, Moqtaderi Z, Struhl K
published in: Molecular cell
information resource reference: Intrinsic histone-DNA interactions and low nucleosome density are important for preferential accessibility of promoter regions in yeast. Mol Cell. 2005 Jun 10; 18(6):735-48.
journal title abbreviation: Mol Cell
publication date: 2005-06-10T00:00:00
year: 2005
type: Academic Article
type: Article
type: Document
type: Information Resource

Defining in vivo targets of nuclear proteins by chromatin immunoprecipitation and microarray analysis.
PubMed Identifier: 18265347
author list: Moqtaderi Z, Struhl K
published in: Current protocols in molecular biology
information resource reference: Defining in vivo targets of nuclear proteins by chromatin immunoprecipitation and microarray analysis. Curr Protoc Mol Biol. 2004 Nov; Chapter 21:Unit 21.9.
journal title abbreviation: Curr Protoc Mol Biol
publication date: 2004-11-01T00:00:00
year: 2004
type: Academic Article
type: Article
type: Document
type: Information Resource

Mapping accessible chromatin regions using Sono-Seq.
PubMed Identifier: 19706456
author list: Auerbach RK, Euskirchen G, Rozowsky J, Lamarre-Vincent N, Moqtaderi Z, Lefrançois P, Struhl K, Gerstein M, Snyder M
published in: Proceedings of the National Academy of Sciences of the United States of America
information resource reference: Mapping accessible chromatin regions using Sono-Seq. Proc Natl Acad Sci U S A. 2009 Sep 01; 106(35):14926-31.
journal title abbreviation: Proc Natl Acad Sci U S A
publication date: 2009-08-18T00:00:00
year: 2009
type: Academic Article
type: Article
type: Document
type: Information Resource

Manipulation of cloned yeast DNA.
PubMed Identifier: 18265094
author list: Lundblad V, Hartzog G, Moqtaderi Z
published in: Current protocols in molecular biology
information resource reference: Manipulation of cloned yeast DNA. Curr Protoc Mol Biol. 2001 May; Chapter 13:Unit13.10.
journal title abbreviation: Curr Protoc Mol Biol
publication date: 2001-05-01T00:00:00
year: 2001
type: Academic Article
type: Article
type: Document
type: Information Resource

Close association of RNA polymerase II and many transcription factors with Pol III genes.
PubMed Identifier: 20139302
author list: Raha D, Wang Z, Moqtaderi Z, Wu L, Zhong G, Gerstein M, Struhl K, Snyder M
published in: Proceedings of the National Academy of Sciences of the United States of America
information resource reference: Close association of RNA polymerase II and many transcription factors with Pol III genes. Proc Natl Acad Sci U S A. 2010 Feb 23; 107(8):3639-44.
journal title abbreviation: Proc Natl Acad Sci U S A
publication date: 2010-02-05T00:00:00
year: 2010
type: Academic Article
type: Article
type: Document
type: Information Resource

An integrated encyclopedia of DNA elements in the human genome.
PubMed Identifier: 22955616
published in: Nature
information resource reference: An integrated encyclopedia of DNA elements in the human genome. Nature. 2012 Sep 06; 489(7414):57-74.
journal title abbreviation: Nature
publication date: 2012-09-06T00:00:00
year: 2012
type: Academic Article
type: Article
type: Document
type: Information Resource

Multiplex Illumina sequencing using DNA barcoding.
PubMed Identifier: 23288465
author list: Wong KH, Jin Y, Moqtaderi Z
published in: Current protocols in molecular biology
information resource reference: Multiplex Illumina sequencing using DNA barcoding. Curr Protoc Mol Biol. 2013; Chapter 7:Unit 7.11..
journal title abbreviation: Curr Protoc Mol Biol
publication date: 2013-01-01T00:00:00
year: 2013
type: Academic Article
type: Article
type: Document
type: Information Resource

High-throughput sequencing reveals a simple model of nucleosome energetics.
PubMed Identifier: 21084631
author list: Locke G, Tolkunov D, Moqtaderi Z, Struhl K, Morozov AV
published in: Proceedings of the National Academy of Sciences of the United States of America
information resource reference: High-throughput sequencing reveals a simple model of nucleosome energetics. Proc Natl Acad Sci U S A. 2010 Dec 07; 107(49):20998-1003.
journal title abbreviation: Proc Natl Acad Sci U S A
publication date: 2010-11-17T00:00:00
year: 2010
type: Academic Article
type: Article
type: Document
type: Information Resource

Yeast homologues of higher eukaryotic TFIID subunits.
PubMed Identifier: 8962109
author list: Moqtaderi Z, Yale JD, Struhl K, Buratowski S
published in: Proceedings of the National Academy of Sciences of the United States of America
information resource reference: Yeast homologues of higher eukaryotic TFIID subunits. Proc Natl Acad Sci U S A. 1996 Dec 10; 93(25):14654-8.
journal title abbreviation: Proc Natl Acad Sci U S A
publication date: 1996-12-10T00:00:00
year: 1996
type: Academic Article
type: Article
type: Document
type: Information Resource