Carey, Vincent
eCommons Login: VJC1
first name: Vincent
last name: Carey
coauthor of: Weiss, Scott
coauthor of: Sacks, Frank
coauthor of: Mirzakhani, Hooman
coauthor of: Raby, Benjamin
coauthor of: Gentleman, Robert
full name: Vincent James Carey, Ph.D.
has faculty rank: Full Professor
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Person ID: 42421
person in primary position: Professor of Medicine
physical neighbor: Birmann, Brenda
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similar to: Camargo, Carlos
similar to: Weiss, Scott
similar to: Manson, JoAnn
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selected publications: Authorship 1817669
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Effect of food and pharmacokinetic variability on didanosine systemic exposure in HIV-infected children. Pediatric AIDS Clinical Trials Group Protocol 144 Study Team.
PubMed Identifier: 10772527
author list: Stevens RC, Rodman JH, Yong FH, Carey V, Knupp CA, Frenkel LM
published in: AIDS research and human retroviruses
information resource reference: Effect of food and pharmacokinetic variability on didanosine systemic exposure in HIV-infected children. Pediatric AIDS Clinical Trials Group Protocol 144 Study Team. AIDS Res Hum Retroviruses. 2000 Mar 20; 16(5):415-21.
journal title abbreviation: AIDS Res Hum Retroviruses
publication date: 2000-03-20T00:00:00
year: 2000
type: Academic Article
type: Article
type: Document
type: Information Resource

Gender-related differences in severe, early-onset chronic obstructive pulmonary disease.
PubMed Identifier: 11112130
author list: Silverman EK, Weiss ST, Drazen JM, Chapman HA, Carey V, Campbell EJ, Denish P, Silverman RA, Celedon JC, Reilly JJ, Ginns LC, Speizer FE
published in: American journal of respiratory and critical care medicine
information resource reference: Gender-related differences in severe, early-onset chronic obstructive pulmonary disease. Am J Respir Crit Care Med. 2000 Dec; 162(6):2152-8.
journal title abbreviation: Am J Respir Crit Care Med
publication date: 2000-12-01T00:00:00
year: 2000
type: Academic Article
type: Article
type: Document
type: Information Resource

Assessment of the role of antibiotics and enterococcal virulence factors in a mouse model of extraintestinal translocation.
PubMed Identifier: 14758165
author list: Krueger WA, Krueger-Rameck S, Koch S, Carey V, Pier GB, Huebner J
published in: Critical care medicine
information resource reference: Assessment of the role of antibiotics and enterococcal virulence factors in a mouse model of extraintestinal translocation. Crit Care Med. 2004 Feb; 32(2):467-71.
journal title abbreviation: Crit Care Med
publication date: 2004-02-01T00:00:00
year: 2004
type: Academic Article
type: Article
type: Document
type: Information Resource

Effects of protein, monounsaturated fat, and carbohydrate intake on blood pressure and serum lipids: results of the OmniHeart randomized trial.
PubMed Identifier: 16287956
author list: Appel LJ, Sacks FM, Carey VJ, Obarzanek E, Swain JF, Miller ER, Conlin PR, Erlinger TP, Rosner BA, Laranjo NM, Charleston J, McCarron P, Bishop LM
published in: JAMA
information resource reference: Effects of protein, monounsaturated fat, and carbohydrate intake on blood pressure and serum lipids: results of the OmniHeart randomized trial. JAMA. 2005 Nov 16; 294(19):2455-64.
journal title abbreviation: JAMA
publication date: 2005-11-16T00:00:00
year: 2005
type: Academic Article
type: Article
type: Document
type: Information Resource

Practice-level effects of interventions to improve asthma care in primary care settings: the Pediatric Asthma Care Patient Outcomes Research Team.
PubMed Identifier: 16336546
author list: Finkelstein JA, Lozano P, Fuhlbrigge AL, Carey VJ, Inui TS, Soumerai SB, Sullivan SD, Wagner EH, Weiss ST, Weiss KB
published in: Health services research
information resource reference: Practice-level effects of interventions to improve asthma care in primary care settings: the Pediatric Asthma Care Patient Outcomes Research Team. Health Serv Res. 2005 Dec; 40(6 Pt 1):1737-57.
journal title abbreviation: Health Serv Res
publication date: 2005-12-01T00:00:00
year: 2005
type: Academic Article
type: Article
type: Document
type: Information Resource

Annual variability in methacholine responsiveness in nonasthmatic working adults.
PubMed Identifier: 9426088
author list: Beckett WS, Pace PA, Sferlazza SJ, Carey VJ, Weiss ST
published in: The European respiratory journal
information resource reference: Annual variability in methacholine responsiveness in nonasthmatic working adults. Eur Respir J. 1997 Nov; 10(11):2515-21.
journal title abbreviation: Eur Respir J
publication date: 1997-11-01T00:00:00
year: 1997
type: Academic Article
type: Article
type: Document
type: Information Resource

Exposure to cockroach allergen in the home is associated with incident doctor-diagnosed asthma and recurrent wheezing.
PubMed Identifier: 11149989
author list: Litonjua AA, Carey VJ, Burge HA, Weiss ST, Gold DR
published in: The Journal of allergy and clinical immunology
information resource reference: Exposure to cockroach allergen in the home is associated with incident doctor-diagnosed asthma and recurrent wheezing. J Allergy Clin Immunol. 2001 Jan; 107(1):41-7.
journal title abbreviation: J Allergy Clin Immunol
publication date: 2001-01-01T00:00:00
year: 2001
type: Academic Article
type: Article
type: Document
type: Information Resource

Case-control study of factors associated with fibrinous pericarditis among horses in central Kentucky during spring 2001.
PubMed Identifier: 14507101
author list: Seahorn JL, Slovis NM, Reimer JM, Carey VJ, Donahue JG, Cohen ND
published in: Journal of the American Veterinary Medical Association
information resource reference: Case-control study of factors associated with fibrinous pericarditis among horses in central Kentucky during spring 2001. J Am Vet Med Assoc. 2003 Sep 15; 223(6):832-8.
journal title abbreviation: J Am Vet Med Assoc
publication date: 2003-09-15T00:00:00
year: 2003
type: Academic Article
type: Article
type: Document
type: Information Resource

Dietary interventions that lower lipoproteins containing apolipoprotein C-III are more effective in whites than in blacks: results of the OmniHeart trial.
PubMed Identifier: 20826623
author list: Furtado JD, Campos H, Sumner AE, Appel LJ, Carey VJ, Sacks FM
published in: The American journal of clinical nutrition
information resource reference: Dietary interventions that lower lipoproteins containing apolipoprotein C-III are more effective in whites than in blacks: results of the OmniHeart trial. Am J Clin Nutr. 2010 Oct; 92(4):714-22.
journal title abbreviation: Am J Clin Nutr
publication date: 2010-09-08T00:00:00
year: 2010
type: Academic Article
type: Article
type: Document
type: Information Resource

Development of antibodies to HIV-1 is associated with an increase in circulating CD3+CD4-CD8- lymphocytes.
PubMed Identifier: 2785883
author list: Margolick JB, Carey V, Muñoz A, Polk BF, Giorgi JV, Bauer KD, Kaslow R, Rinaldo C
published in: Clinical immunology and immunopathology
information resource reference: Development of antibodies to HIV-1 is associated with an increase in circulating CD3+CD4-CD8- lymphocytes. Clin Immunol Immunopathol. 1989 Jun; 51(3):348-61.
journal title abbreviation: Clin Immunol Immunopathol
publication date: 1989-06-01T00:00:00
year: 1989
type: Academic Article
type: Article
type: Document
type: Information Resource

Using events from dropouts in nonparametric survival function estimation with application to incubation of AIDS
author list: Hoover D, Munoz A, Carey V, Taylor J, Van Raden M, Chmiel J, Kingsley L
published in: J Am Stat Assoc
information resource reference: Using events from dropouts in nonparametric survival function estimation with application to incubation of AIDS. J Am Stat Assoc. 1993; 88:37-43.
publication date: 1993-01-01T00:00:00
year: 1993
type: Academic Article
type: Article
type: Document
type: Information Resource

Respiratory symptoms in urban Hispanic and non-Hispanic white women.
PubMed Identifier: 8616555
author list: David MM, Hanrahan JP, Carey V, Speizer FE, Tager IB
published in: American journal of respiratory and critical care medicine
information resource reference: Respiratory symptoms in urban Hispanic and non-Hispanic white women. Am J Respir Crit Care Med. 1996 Apr; 153(4 Pt 1):1285-91.
journal title abbreviation: Am J Respir Crit Care Med
publication date: 1996-04-01T00:00:00
year: 1996
type: Academic Article
type: Article
type: Document
type: Information Resource

Authorship 105273
type: Authorship
author rank in publication: 1
linked author: Carey, Vincent
linked information resource: Rationale and design of the Optimal Macro-Nutrient Intake Heart Trial to Prevent Heart Disease (OMNI-Heart).

Effect of diet composition on energy expenditure during weight loss: the POUNDS LOST Study.
PubMed Identifier: 21946707
author list: Bray GA, Smith SR, DeJonge L, de Souza R, Rood J, Champagne CM, Laranjo N, Carey V, Obarzanek E, Loria CM, Anton SD, Ryan DH, Greenway FL, Williamson D, Sacks FM
published in: International journal of obesity (2005)
information resource reference: Effect of diet composition on energy expenditure during weight loss: the POUNDS LOST Study. Int J Obes (Lond). 2012 Mar; 36(3):448-55.
journal title abbreviation: Int J Obes (Lond)
publication date: 2011-09-27T00:00:00
year: 2011
type: Academic Article
type: Article
type: Document
type: Information Resource

https://connects.catalyst.harvard.edu/Profiles/profile/1049175
PubMed Identifier: 15867115
author list: Sullivan SD, Lee TA, Blough DK, Finkelstein JA, Lozano P, Inui TS, Fuhlbrigge AL, Carey VJ, Wagner E, Weiss KB
published in: Archives of pediatrics & adolescent medicine
information resource reference: A multisite randomized trial of the effects of physician education and organizational change in chronic asthma care: cost-effectiveness analysis of the Pediatric Asthma Care Patient Outcomes Research Team II (PAC-PORT II). Arch Pediatr Adolesc Med. 2005 May; 159(5):428-34.
journal title abbreviation: Arch Pediatr Adolesc Med
publication date: 2005-05-01T00:00:00
year: 2005
type: Academic Article
type: Article
type: Document
type: Information Resource
label: A multisite randomized trial of the effects of physician education and organizational change in chronic asthma care: cost-effectiveness analysis of the Pediatric Asthma Care Patient Outcomes Research Team II (PAC-PORT II).

Reliability of CD4 quantitation in human immunodeficiency virus-positive children: implications for definition of immunologic response to highly active antiretroviral therapy.
PubMed Identifier: 15879025
author list: Carey VJ, Pahwa S, Weinberg A
published in: Clinical and diagnostic laboratory immunology
information resource reference: Reliability of CD4 quantitation in human immunodeficiency virus-positive children: implications for definition of immunologic response to highly active antiretroviral therapy. Clin Diagn Lab Immunol. 2005 May; 12(5):640-3.
journal title abbreviation: Clin Diagn Lab Immunol
publication date: 2005-05-01T00:00:00
year: 2005
type: Academic Article
type: Article
type: Document
type: Information Resource

Unbiased estimating equations from working correlation models for irregularly timed repeated measures
author list: Wang YG, Carey VJ
published in: J Amer Stat Assoc
information resource reference: Unbiased estimating equations from working correlation models for irregularly timed repeated measures. J Amer Stat Assoc. 2004; 99:845-53.
publication date: 2004-01-01T00:00:00
year: 2004
type: Academic Article
type: Article
type: Document
type: Information Resource

GGtools: analysis of genetics of gene expression in bioconductor.
PubMed Identifier: 17158513
author list: Carey VJ, Morgan M, Falcon S, Lazarus R, Gentleman R
published in: Bioinformatics (Oxford, England)
information resource reference: GGtools: analysis of genetics of gene expression in bioconductor. Bioinformatics. 2007 Feb 15; 23(4):522-3.
journal title abbreviation: Bioinformatics
publication date: 2006-12-08T00:00:00
year: 2006
type: Academic Article
type: Article
type: Document
type: Information Resource

SGDI: system for genomic data integration.
PubMed Identifier: 18229682
author list: Carey VJ, Gentry J, Sarkar R, Gentleman D, Ramaswamy S
published in: Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing
information resource reference: SGDI: system for genomic data integration. Pac Symp Biocomput. 2008; 141-52.
journal title abbreviation: Pac Symp Biocomput
publication date: 2008-01-01T00:00:00
year: 2008
type: Academic Article
type: Article
type: Document
type: Information Resource

Bioconductor: open software development for computational biology and bioinformatics.
PubMed Identifier: 15461798
author list: Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JY, Zhang J
published in: Genome biology
information resource reference: Bioconductor: open software development for computational biology and bioinformatics. Genome Biol. 2004; 5(10):R80.
journal title abbreviation: Genome Biol
publication date: 2004-09-15T00:00:00
year: 2004
type: Academic Article
type: Article
type: Document
type: Information Resource

A role for Wnt signaling genes in the pathogenesis of impaired lung function in asthma.
PubMed Identifier: 19926868
author list: Sharma S, Tantisira K, Carey V, Murphy AJ, Lasky-Su J, Celedón JC, Lazarus R, Klanderman B, Rogers A, Soto-Quirós M, Avila L, Mariani T, Gaedigk R, Leeder S, Torday J, Warburton D, Raby B, Weiss ST
published in: American journal of respiratory and critical care medicine
information resource reference: A role for Wnt signaling genes in the pathogenesis of impaired lung function in asthma. Am J Respir Crit Care Med. 2010 Feb 15; 181(4):328-36.
journal title abbreviation: Am J Respir Crit Care Med
publication date: 2009-11-19T00:00:00
year: 2009
type: Academic Article
type: Article
type: Document
type: Information Resource

Expression network analysis reveals cord blood vitamin D-associated genes affecting risk of early life wheeze.
PubMed Identifier: 30021811
author list: Mirzakhani H, Al-Garawi AA, Carey VJ, Qiu W, Litonjua AA, Weiss ST
published in: Thorax
information resource reference: Expression network analysis reveals cord blood vitamin D-associated genes affecting risk of early life wheeze. Thorax. 2019 02; 74(2):200-202.
journal title abbreviation: Thorax
publication date: 2018-07-18T00:00:00
year: 2018
type: Academic Article
type: Article
type: Document
type: Information Resource

Authorship 1080020
type: Authorship
author rank in publication: 3
linked author: Carey, Vincent
linked information resource: Expression network analysis reveals cord blood vitamin D-associated genes affecting risk of early life wheeze.

Expression analysis of asthma candidate genes during human and murine lung development.
PubMed Identifier: 21699702
author list: Melén E, Kho AT, Sharma S, Gaedigk R, Leeder JS, Mariani TJ, Carey VJ, Weiss ST, Tantisira KG
published in: Respiratory research
information resource reference: Expression analysis of asthma candidate genes during human and murine lung development. Respir Res. 2011 Jun 23; 12:86.
journal title abbreviation: Respir Res
publication date: 2011-06-23T00:00:00
year: 2011
type: Academic Article
type: Article
type: Document
type: Information Resource

Authorship 110278
type: Authorship
author rank in publication: 2
linked author: Carey, Vincent
linked information resource: Evaluation of asthma prescription measures and health system performance based on emergency department utilization.

Authorship 111241
type: Authorship
author rank in publication: 4
linked author: Carey, Vincent
linked information resource: Effect of food and pharmacokinetic variability on didanosine systemic exposure in HIV-infected children. Pediatric AIDS Clinical Trials Group Protocol 144 Study Team.

Platform dependence of inference on gene-wise and gene-set involvement in human lung development.
PubMed Identifier: 19545372
author list: Du R, Tantisira K, Carey V, Bhattacharya S, Metje S, Kho AT, Klanderman BJ, Gaedigk R, Lazarus R, Mariani TJ, Leeder JS, Weiss ST
published in: BMC bioinformatics
information resource reference: Platform dependence of inference on gene-wise and gene-set involvement in human lung development. BMC Bioinformatics. 2009 Jun 19; 10:189.
journal title abbreviation: BMC Bioinformatics
publication date: 2009-06-19T00:00:00
year: 2009
type: Academic Article
type: Article
type: Document
type: Information Resource

Impact of Preeclampsia on the Relationship between Maternal Asthma and Offspring Asthma. An Observation from the VDAART Clinical Trial.
PubMed Identifier: 30153046
author list: Mirzakhani H, Carey VJ, McElrath TF, Qiu W, Hollis BW, O'Connor GT, Zeiger RS, Bacharier L, Litonjua AA, Weiss ST
published in: American journal of respiratory and critical care medicine
information resource reference: Impact of Preeclampsia on the Relationship between Maternal Asthma and Offspring Asthma. An Observation from the VDAART Clinical Trial. Am J Respir Crit Care Med. 2019 01 01; 199(1):32-42.
journal title abbreviation: Am J Respir Crit Care Med
publication date: 2019-01-01T00:00:00
year: 2019
type: Academic Article
type: Article
type: Document
type: Information Resource

Authorship 1090809
type: Authorship
author rank in publication: 2
linked author: Carey, Vincent
linked information resource: Impact of Preeclampsia on the Relationship between Maternal Asthma and Offspring Asthma. An Observation from the VDAART Clinical Trial.

Bioinformatics and Computational Biology Solutions with R and Bioconductor
author list: Gentleman RC, Carey VJ, Huber W, Irizarry RA, Dudoit S, editors
published in: Bioinformatics and Computational Biology Solutions with R and Bioconductor
information resource reference: Bioinformatics and Computational Biology Solutions with R and Bioconductor. 2005.
publication date: 2005-01-01T00:00:00
year: 2005
type: Academic Article
type: Article
type: Document
type: Information Resource

[The REALIST (REsiduAl risk, LIpids and Standard Therapies) study: an analysis of residual risk attributable to lipid profile in acute coronary syndrome].
PubMed Identifier: 21208833
author list: Millán Núñez-Cortés J, Montoya JP, Salas XP, Hernández Mijares A, Carey VJ, Hermans MP, Sacks FM, Fruchart JC
published in: Endocrinologia y nutricion : organo de la Sociedad Espanola de Endocrinologia y Nutricion
information resource reference: [The REALIST (REsiduAl risk, LIpids and Standard Therapies) study: an analysis of residual risk attributable to lipid profile in acute coronary syndrome]. Endocrinol Nutr. 2011 Jan; 58(1):38-47.
journal title abbreviation: Endocrinol Nutr
publication date: 2011-01-03T00:00:00
year: 2011
type: Academic Article
type: Article
type: Document
type: Information Resource

The CD4+ T-cell transcriptome and serum IgE in asthma: IL17RB and the role of sex.
PubMed Identifier: 21473777
author list: Hunninghake GM, Chu JH, Sharma SS, Cho MH, Himes BE, Rogers AJ, Murphy A, Carey VJ, Raby BA
published in: BMC pulmonary medicine
information resource reference: The CD4+ T-cell transcriptome and serum IgE in asthma: IL17RB and the role of sex. BMC Pulm Med. 2011 Apr 07; 11:17.
journal title abbreviation: BMC Pulm Med
publication date: 2011-04-07T00:00:00
year: 2011
type: Academic Article
type: Article
type: Document
type: Information Resource

Querying on-line resources
author list: Carey VJ, Temple Lang D, Gentry J, Zhang J, Gentleman RC
published in: Gentleman RC, Carey VJ, Huber W, Irizarry RA, Dudoit S, editors. Bioinformatics and Computational Biology Solutions Using R and Bioconductor
information resource reference: Querying on-line resources. Gentleman RC, Carey VJ, Huber W, Irizarry RA, Dudoit S, editors. Bioinformatics and Computational Biology Solutions Using R and Bioconductor. 2005; 135-46.
publication date: 2005-01-01T00:00:00
year: 2005
type: Academic Article
type: Article
type: Document
type: Information Resource

Authorship 133031
type: Authorship
author rank in publication: 4
linked author: Carey, Vincent
linked information resource: Assessment of the role of antibiotics and enterococcal virulence factors in a mouse model of extraintestinal translocation.

Authorship 1096269
type: Authorship
author rank in publication: 7
linked author: Carey, Vincent
linked information resource: A Phase 2, Randomized, Control Trial of Group B Streptococcus (GBS) Type III Capsular Polysaccharide-tetanus Toxoid (GBS III-TT) Vaccine to Prevent Vaginal Colonization With GBS III.

A Phase 2, Randomized, Control Trial of Group B Streptococcus (GBS) Type III Capsular Polysaccharide-tetanus Toxoid (GBS III-TT) Vaccine to Prevent Vaginal Colonization With GBS III.
PubMed Identifier: 30281066
author list: Hillier SL, Ferrieri P, Edwards MS, Ewell M, Ferris D, Fine P, Carey V, Meyn L, Hoagland D, Kasper DL, Paoletti LC, Hill H, Baker CJ
published in: Clinical infectious diseases : an official publication of the Infectious Diseases Society of America
information resource reference: A Phase 2, Randomized, Control Trial of Group B Streptococcus (GBS) Type III Capsular Polysaccharide-tetanus Toxoid (GBS III-TT) Vaccine to Prevent Vaginal Colonization With GBS III. Clin Infect Dis. 2019 05 30; 68(12):2079-2086.
journal title abbreviation: Clin Infect Dis
publication date: 2019-05-30T00:00:00
year: 2019
type: Academic Article
type: Article
type: Document
type: Information Resource

Stromal fibroblasts present in invasive human breast carcinomas promote tumor growth and angiogenesis through elevated SDF-1/CXCL12 secretion.
PubMed Identifier: 15882617
author list: Orimo A, Gupta PB, Sgroi DC, Arenzana-Seisdedos F, Delaunay T, Naeem R, Carey VJ, Richardson AL, Weinberg RA
published in: Cell
information resource reference: Stromal fibroblasts present in invasive human breast carcinomas promote tumor growth and angiogenesis through elevated SDF-1/CXCL12 secretion. Cell. 2005 May 06; 121(3):335-48.
journal title abbreviation: Cell
publication date: 2005-05-06T00:00:00
year: 2005
type: Academic Article
type: Article
type: Document
type: Information Resource

Airways responsiveness, wheeze onset, and recurrent asthma episodes in young adolescents. The East Boston Childhood Respiratory Disease Cohort.
PubMed Identifier: 8542143
author list: Carey VJ, Weiss ST, Tager IB, Leeder SR, Speizer FE
published in: American journal of respiratory and critical care medicine
information resource reference: Airways responsiveness, wheeze onset, and recurrent asthma episodes in young adolescents. The East Boston Childhood Respiratory Disease Cohort. Am J Respir Crit Care Med. 1996 Jan; 153(1):356-61.
journal title abbreviation: Am J Respir Crit Care Med
publication date: 1996-01-01T00:00:00
year: 1996
type: Academic Article
type: Article
type: Document
type: Information Resource

Untitled Publication
author list: VJ Carey, BJ Harshfield
information resource reference: 2007.
publication date: 2007-01-01T00:00:00
year: 2007
type: Academic Article
type: Article
type: Document
type: Information Resource

Childhood injury mortality in New South Wales: geographical and socio-economic variations.
PubMed Identifier: 8489794
author list: Carey V, Vimpani G, Taylor R
published in: Journal of paediatrics and child health
information resource reference: Childhood injury mortality in New South Wales: geographical and socio-economic variations. J Paediatr Child Health. 1993 Apr; 29(2):136-40.
journal title abbreviation: J Paediatr Child Health
publication date: 1993-04-01T00:00:00
year: 1993
type: Academic Article
type: Article
type: Document
type: Information Resource

Analysis of histone 2B-GFP retention reveals slowly cycling hematopoietic stem cells.
PubMed Identifier: 19060879
author list: Foudi A, Hochedlinger K, Van Buren D, Schindler JW, Jaenisch R, Carey V, Hock H
published in: Nature biotechnology
information resource reference: Analysis of histone 2B-GFP retention reveals slowly cycling hematopoietic stem cells. Nat Biotechnol. 2009 Jan; 27(1):84-90.
journal title abbreviation: Nat Biotechnol
publication date: 2008-12-05T00:00:00
year: 2008
type: Academic Article
type: Article
type: Document
type: Information Resource

Systemic steroid exposure is associated with differential methylation in chronic obstructive pulmonary disease.
PubMed Identifier: 23065012
author list: Wan ES, Qiu W, Baccarelli A, Carey VJ, Bacherman H, Rennard SI, Agustí A, Anderson WH, Lomas DA, DeMeo DL
published in: American journal of respiratory and critical care medicine
information resource reference: Systemic steroid exposure is associated with differential methylation in chronic obstructive pulmonary disease. Am J Respir Crit Care Med. 2012 Dec 15; 186(12):1248-55.
journal title abbreviation: Am J Respir Crit Care Med
publication date: 2012-10-11T00:00:00
year: 2012
type: Academic Article
type: Article
type: Document
type: Information Resource

Case studies using graphs on biological data
author list: Gentleman R, Scholtens D, Ding B, Carey VJ, Huber W
published in: Gentleman R, Carey VJ, Huber W, Irizarry RA, Dudoit S, editors. Bioinformatics and Computational Biology Solutions Using R and Bioconductor
information resource reference: Case studies using graphs on biological data. Gentleman R, Carey VJ, Huber W, Irizarry RA, Dudoit S, editors. Bioinformatics and Computational Biology Solutions Using R and Bioconductor. 2005; 363-93.
publication date: 2005-01-01T00:00:00
year: 2005
type: Academic Article
type: Article
type: Document
type: Information Resource

Working correlation structure misspecification, estimation and covariate design: implications for GEE performance
author list: Wang YG, Carey VJ
published in: Biometrika
information resource reference: Working correlation structure misspecification, estimation and covariate design: implications for GEE performance. Biometrika. 2003; 90:29-42.
publication date: 2003-01-01T00:00:00
year: 2003
type: Academic Article
type: Article
type: Document
type: Information Resource

Machine learning concepts and tools for statistical genomics
author list: Carey VJ
published in: Gentleman RC, Carey VJ, Huber W, Irizarry RA, Dudoit S, editors. Bioinformatics and Computational Biology Solutions Using R and Bioconductor
information resource reference: Machine learning concepts and tools for statistical genomics. Gentleman RC, Carey VJ, Huber W, Irizarry RA, Dudoit S, editors. Bioinformatics and Computational Biology Solutions Using R and Bioconductor. 2005; 273-92.
publication date: 2005-01-01T00:00:00
year: 2005
type: Academic Article
type: Article
type: Document
type: Information Resource

Prognostic Value of 3-Color Flow Cytometry in Advanced Pediatric HIV Disease
author list: Vincent Carey, A Weinberg, S Pahwa, A Kovacs, S Burchett, and ACTG 366 Study Group
published in: CROI 2007: 14th Conference on Retroviruses and Opportunistic Infections
information resource reference: Prognostic Value of 3-Color Flow Cytometry in Advanced Pediatric HIV Disease. CROI 2007: 14th Conference on Retroviruses and Opportunistic Infections. 2007; 14.
publication date: 2007-02-26T00:00:00
year: 2007
type: Academic Article
type: Article
type: Document
type: Information Resource

S-plus and C routines for the solution of generalized estimating equations
author list: Carey V
published in: S-plus and C routines for the solution of generalized estimating equations
information resource reference: S-plus and C routines for the solution of generalized estimating equations. 1992.
publication date: 1992-01-01T00:00:00
year: 1992
type: Academic Article
type: Article
type: Document
type: Information Resource

Regression analysis for large binary clusters
author list: Carey VJ
published in: Regression analysis for large binary clusters
information resource reference: Regression analysis for large binary clusters. 1993.
publication date: 1993-01-01T00:00:00
year: 1993
type: Academic Article
type: Article
type: Document
type: Information Resource

Impact of parental asthma, prenatal maternal asthma control, and vitamin D status on risk of asthma and recurrent wheeze in 3-year-old children.
PubMed Identifier: 30461089
author list: Mirzakhani H, Carey VJ, Zeiger R, Bacharier LB, O'Connor GT, Schatz MX, Laranjo N, Weiss ST, Litonjua AA
published in: Clinical and experimental allergy : journal of the British Society for Allergy and Clinical Immunology
information resource reference: Impact of parental asthma, prenatal maternal asthma control, and vitamin D status on risk of asthma and recurrent wheeze in 3-year-old children. Clin Exp Allergy. 2019 04; 49(4):419-429.
journal title abbreviation: Clin Exp Allergy
publication date: 2019-01-03T00:00:00
year: 2019
type: Academic Article
type: Article
type: Document
type: Information Resource

Authorship 1113619
type: Authorship
author rank in publication: 2
linked author: Carey, Vincent
linked information resource: Impact of parental asthma, prenatal maternal asthma control, and vitamin D status on risk of asthma and recurrent wheeze in 3-year-old children.

GEE solvers: case studies in DSC design and implementation
author list: Carey VJ
published in: Proceedings of the 2d International Workshop on Distributed Statistical Computing
information resource reference: GEE solvers: case studies in DSC design and implementation. Proceedings of the 2d International Workshop on Distributed Statistical Computing. 2001; 1-14.
publication date: 2001-01-01T00:00:00
year: 2001
type: Academic Article
type: Article
type: Document
type: Information Resource

Estimation of design effects and diarrhea clustering within households and villages.
PubMed Identifier: 8256785
author list: Katz J, Carey VJ, Zeger SL, Sommer A
published in: American journal of epidemiology
information resource reference: Estimation of design effects and diarrhea clustering within households and villages. Am J Epidemiol. 1993 Dec 01; 138(11):994-1006.
journal title abbreviation: Am J Epidemiol
publication date: 1993-12-01T00:00:00
year: 1993
type: Academic Article
type: Article
type: Document
type: Information Resource

Cox regression models for intermediate events, with discharge from hospital as an example.
PubMed Identifier: 8452900
author list: Wax Y, Galai N, Carey V, Simchen E
published in: Epidemiology (Cambridge, Mass.)
information resource reference: Cox regression models for intermediate events, with discharge from hospital as an example. Epidemiology. 1993 Mar; 4(2):120-7.
journal title abbreviation: Epidemiology
publication date: 1993-03-01T00:00:00
year: 1993
type: Academic Article
type: Article
type: Document
type: Information Resource

Ontology concepts and tools for statistical genomics
author list: Carey VJ
published in: J Multivariate Analysis
information resource reference: Ontology concepts and tools for statistical genomics. J Multivariate Analysis. 2003; 90:213-28.
publication date: 2003-01-01T00:00:00
year: 2003
type: Academic Article
type: Article
type: Document
type: Information Resource

Literate statistical programming: concepts and tools
author list: Carey VJ
published in: Chance
information resource reference: Literate statistical programming: concepts and tools. Chance. 2001; 14:46-50.
publication date: 2001-01-01T00:00:00
year: 2001
type: Academic Article
type: Article
type: Document
type: Information Resource

Authorship 11514
type: Authorship
author rank in publication: 5
linked author: Carey, Vincent
linked information resource: The prevalence of pain in pediatric human immunodeficiency virus/acquired immunodeficiency syndrome as reported by participants in the Pediatric Late Outcomes Study (PACTG 219).

Erosion of the telomeric single-strand overhang at replicative senescence.
PubMed Identifier: 12652299
author list: Stewart SA, Ben-Porath I, Carey VJ, O'Connor BF, Hahn WC, Weinberg RA
published in: Nature genetics
information resource reference: Erosion of the telomeric single-strand overhang at replicative senescence. Nat Genet. 2003 Apr; 33(4):492-6.
journal title abbreviation: Nat Genet
publication date: 2003-03-24T00:00:00
year: 2003
type: Academic Article
type: Article
type: Document
type: Information Resource

Expanding the AnVIL (Analysis, Visualization, and Informatics Lab-space)
end date: 2028-04-30
principal investigator name: SCHATZ, MICHAEL
start date: 2018-09-21
type: Grant
sponsor award id: U24HG010263

Co-Principal Investigator
type: Researcher Role
researcher role of: Carey, Vincent
contributes to: Expanding the AnVIL (Analysis, Visualization, and Informatics Lab-space)

Evaluation of asthma prescription measures and health system performance based on emergency department utilization.
PubMed Identifier: 15083107
author list: Fuhlbrigge A, Carey VJ, Adams RJ, Finkelstein JA, Lozano P, Weiss ST, Weiss KB
published in: Medical care
information resource reference: Evaluation of asthma prescription measures and health system performance based on emergency department utilization. Med Care. 2004 May; 42(5):465-71.
journal title abbreviation: Med Care
publication date: 2004-05-01T00:00:00
year: 2004
type: Academic Article
type: Article
type: Document
type: Information Resource

Immune reconstitution after receipt of highly active antiretroviral therapy in children with advanced or progressive HIV disease and complete or partial viral load response.
PubMed Identifier: 15962224
author list: Kovacs A, Montepiedra G, Carey V, Pahwa S, Weinberg A, Frenkel L, Capparelli E, Mofenson L, Smith E, McIntosh K, Burchett SK
published in: The Journal of infectious diseases
information resource reference: Immune reconstitution after receipt of highly active antiretroviral therapy in children with advanced or progressive HIV disease and complete or partial viral load response. J Infect Dis. 2005 Jul 15; 192(2):296-302.
journal title abbreviation: J Infect Dis
publication date: 2005-06-14T00:00:00
year: 2005
type: Academic Article
type: Article
type: Document
type: Information Resource

Authorship 1125707
type: Authorship
author rank in publication: 10
linked author: Carey, Vincent
linked information resource: Sex differences in gene expression in response to ischemia in the human left ventricular myocardium.

Sex differences in gene expression in response to ischemia in the human left ventricular myocardium.
PubMed Identifier: 30649309
author list: Stone G, Choi A, Meritxell O, Gorham J, Heydarpour M, Seidman CE, Seidman JG, Aranki SF, Body SC, Carey VJ, Raby BA, Stranger BE, Muehlschlegel JD
published in: Human molecular genetics
information resource reference: Sex differences in gene expression in response to ischemia in the human left ventricular myocardium. Hum Mol Genet. 2019 05 15; 28(10):1682-1693.
journal title abbreviation: Hum Mol Genet
publication date: 2019-05-15T00:00:00
year: 2019
type: Academic Article
type: Article
type: Document
type: Information Resource

https://connects.catalyst.harvard.edu/Profiles/profile/1169613
PubMed Identifier: 19605490
author list: Shiu C, Cunningham CK, Greenough T, Muresan P, Sanchez-Merino V, Carey V, Jackson JB, Ziemniak C, Fox L, Belzer M, Ray SC, Luzuriaga K, Persaud D
published in: Journal of virology
information resource reference: Identification of ongoing human immunodeficiency virus type 1 (HIV-1) replication in residual viremia during recombinant HIV-1 poxvirus immunizations in patients with clinically undetectable viral loads on durable suppressive highly active antiretroviral therapy. J Virol. 2009 Oct; 83(19):9731-42.
journal title abbreviation: J Virol
publication date: 2009-07-15T00:00:00
year: 2009
type: Academic Article
type: Article
type: Document
type: Information Resource
label: Identification of ongoing human immunodeficiency virus type 1 (HIV-1) replication in residual viremia during recombinant HIV-1 poxvirus immunizations in patients with clinically undetectable viral loads on durable suppressive highly active antiretroviral therapy.

Contribution of high plasma triglycerides and low high-density lipoprotein cholesterol to residual risk of coronary heart disease after establishment of low-density lipoprotein cholesterol control.
PubMed Identifier: 20816113
author list: Carey VJ, Bishop L, Laranjo N, Harshfield BJ, Kwiat C, Sacks FM
published in: The American journal of cardiology
information resource reference: Contribution of high plasma triglycerides and low high-density lipoprotein cholesterol to residual risk of coronary heart disease after establishment of low-density lipoprotein cholesterol control. Am J Cardiol. 2010 Sep 15; 106(6):757-63.
journal title abbreviation: Am J Cardiol
publication date: 2010-08-01T00:00:00
year: 2010
type: Academic Article
type: Article
type: Document
type: Information Resource

Authorship 1129243
type: Authorship
author rank in publication: 8
linked author: Carey, Vincent
linked information resource: Targeted expression profiling by RNA-Seq improves detection of cellular dynamics during pregnancy and identifies a role for T cells in term parturition.

Targeted expression profiling by RNA-Seq improves detection of cellular dynamics during pregnancy and identifies a role for T cells in term parturition.
PubMed Identifier: 30696862
author list: Tarca AL, Romero R, Xu Z, Gomez-Lopez N, Erez O, Hsu CD, Hassan SS, Carey VJ
published in: Scientific reports
information resource reference: Targeted expression profiling by RNA-Seq improves detection of cellular dynamics during pregnancy and identifies a role for T cells in term parturition. Sci Rep. 2019 01 29; 9(1):848.
journal title abbreviation: Sci Rep
publication date: 2019-01-29T00:00:00
year: 2019
type: Academic Article
type: Article
type: Document
type: Information Resource

Authorship 1136572
type: Authorship
author rank in publication: 7
linked author: Carey, Vincent
linked information resource: Metabolomics and Communication Skills Development in Children; Evidence from the Ages and Stages Questionnaire.

Authorship 1136763
type: Authorship
author rank in publication: 9
linked author: Carey, Vincent
linked information resource: restfulSE: A semantically rich interface for cloud-scale genomics with Bioconductor.

restfulSE: A semantically rich interface for cloud-scale genomics with Bioconductor.
PubMed Identifier: 30828438
author list: Gopaulakrishnan S, Pollack S, Stubbs BJ, Pagès H, Readey J, Davis S, Waldron L, Morgan M, Carey V
published in: F1000Research
information resource reference: restfulSE: A semantically rich interface for cloud-scale genomics with Bioconductor. F1000Res. 2019; 8:21.
journal title abbreviation: F1000Res
publication date: 2019-01-07T00:00:00
year: 2019
type: Academic Article
type: Article
type: Document
type: Information Resource

Metabolomics and Communication Skills Development in Children; Evidence from the Ages and Stages Questionnaire.
PubMed Identifier: 30841573
author list: Kelly RS, Boulin A, Laranjo N, Lee-Sarwar K, Chu SH, Yadama AP, Carey V, Litonjua AA, Lasky-Su J, Weiss ST
published in: Metabolites
information resource reference: Metabolomics and Communication Skills Development in Children; Evidence from the Ages and Stages Questionnaire. Metabolites. 2019 Mar 05; 9(3).
journal title abbreviation: Metabolites
publication date: 2019-03-05T00:00:00
year: 2019
type: Academic Article
type: Article
type: Document
type: Information Resource

Software
MeSH DescriptorUI: D012984
MeSH semantic group name: Activities & Behaviors
MeSH semantic group name: Concepts & Ideas
MeSH semantic group name: Objects
MeSH semantic group name: Occupations
number of authors: 2001
number of publications: 4573
uniqueness weight: 0.362133
type: Concept

Genomics
MeSH DescriptorUI: D023281
MeSH semantic group name: Occupations
number of authors: 2037
number of publications: 6390
uniqueness weight: 0.308696
type: Concept

Authorship 1141633
type: Authorship
author rank in publication: 4
linked author: Carey, Vincent
linked information resource: Association of the Infant Gut Microbiome With Early Childhood Neurodevelopmental Outcomes: An Ancillary Study to the VDAART Randomized Clinical Trial.

Association of the Infant Gut Microbiome With Early Childhood Neurodevelopmental Outcomes: An Ancillary Study to the VDAART Randomized Clinical Trial.
PubMed Identifier: 30901046
author list: Sordillo JE, Korrick S, Laranjo N, Carey V, Weinstock GM, Gold DR, O'Connor G, Sandel M, Bacharier LB, Beigelman A, Zeiger R, Litonjua AA, Weiss ST
published in: JAMA network open
information resource reference: Association of the Infant Gut Microbiome With Early Childhood Neurodevelopmental Outcomes: An Ancillary Study to the VDAART Randomized Clinical Trial. JAMA Netw Open. 2019 03 01; 2(3):e190905.
journal title abbreviation: JAMA Netw Open
publication date: 2019-03-01T00:00:00
year: 2019
type: Academic Article
type: Article
type: Document
type: Information Resource

Computational Biology
MeSH DescriptorUI: D019295
MeSH semantic group name: Occupations
number of authors: 1564
number of publications: 3731
uniqueness weight: 0.408929
type: Concept

Asthma
MeSH DescriptorUI: D001249
MeSH semantic group name: Disorders
number of authors: 1166
number of publications: 6442
uniqueness weight: 0.259437
type: Concept

Vitamin D
MeSH DescriptorUI: D014807
MeSH semantic group name: Chemicals & Drugs
number of authors: 866
number of publications: 3262
uniqueness weight: 0.381362
type: Concept

Maternal Asthma, Preeclampsia, and Risk for Childhood Asthma at Age Six.
PubMed Identifier: 31059286
author list: Mirzakhani H, Carey VJ, McElrath TF, Hollis BW, O'Connor GT, Zeiger RS, Bacharier L, Litonjua AA, Weiss ST
published in: American journal of respiratory and critical care medicine
information resource reference: Maternal Asthma, Preeclampsia, and Risk for Childhood Asthma at Age Six. Am J Respir Crit Care Med. 2019 09 01; 200(5):638-642.
journal title abbreviation: Am J Respir Crit Care Med
publication date: 2019-09-01T00:00:00
year: 2019
type: Academic Article
type: Article
type: Document
type: Information Resource

Authorship 1151146
type: Authorship
author rank in publication: 2
linked author: Carey, Vincent
linked information resource: Maternal Asthma, Preeclampsia, and Risk for Childhood Asthma at Age Six.

Biostatistics
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type: Organization

Medicine
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type: Organization

Nutrition
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type: Organization

Pediatrics
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type: Organization

Preventive Medicine
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type: Organization

Emergency Medicine
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type: Organization

Pulmonary
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type: Organization

Channing Division of Network Medicine
type: Division
type: Organization

Brigham and Women's Hospital
type: Organization

Boston Children's Hospital
type: Organization

Harvard T.H. Chan School of Public Health
type: Organization

Massachusetts General Hospital
type: Organization

Sacks, Frank
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person in primary position: Professor of Cardiovascular Disease Prevention and Medicine, Emeritus
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Gold, Diane
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Raby, Benjamin
eCommons Login: BR10
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last name: Raby
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longitude: -71.10208900000000
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person in primary position: Leila and Irving Perlmutter Professor of Pediatrics
type: Agent
type: Person
preferred title: Leila and Irving Perlmutter Professor of Pediatrics

Weiss, Scott
eCommons Login: STW1
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last name: Weiss
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person in primary position: Professor of Medicine
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Willett, Walter
eCommons Login: WCW2
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person in primary position: Professor of Epidemiology and Nutrition
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Camargo, Carlos
eCommons Login: CAC9
first name: Carlos
last name: Camargo
full name: Carlos Arturo Camargo, Jr., Dr.P.H., M.D.
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Person ID: 25636
person in primary position: Professor of Emergency Medicine
type: Agent
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Authorship 1157357
type: Authorship
author rank in publication: 2
linked author: Carey, Vincent
linked information resource: deconvSeq: deconvolution of cell mixture distribution in sequencing data.

deconvSeq: deconvolution of cell mixture distribution in sequencing data.
PubMed Identifier: 31147676
author list: Du R, Carey V, Weiss ST
published in: Bioinformatics (Oxford, England)
information resource reference: deconvSeq: deconvolution of cell mixture distribution in sequencing data. Bioinformatics. 2019 12 15; 35(24):5095-5102.
journal title abbreviation: Bioinformatics
publication date: 2019-12-15T00:00:00
year: 2019
type: Academic Article
type: Article
type: Document
type: Information Resource

Birmann, Brenda
eCommons Login: BMB5
first name: Brenda
last name: Birmann
full name: Brenda Melanie Birmann, Sc.D.
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latitude: 42.33669100000000
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Person ID: 47203
person in primary position: Assistant Professor of Medicine
type: Agent
type: Person
preferred title: Assistant Professor of Medicine

Authorship 148318
type: Authorship
author rank in publication: 2
linked author: Carey, Vincent
linked information resource: The role of genotype in determining the effects of cigarette smoking on pulmonary function.

Holmes, Michelle
eCommons Login: MDH1
first name: Michelle
last name: Holmes
full name: Michelle D. Holmes, Dr.P.H., M.D.
has faculty rank: Full Professor
latitude: 42.33669100000000
longitude: -71.10208900000000
Person ID: 27819
person in primary position: Professor of Medicine
type: Agent
type: Person
preferred title: Professor of Medicine

Cho, Michael
eCommons Login: MHC2
first name: Michael
last name: Cho
full name: Michael Hyosang Cho, M.D.
has faculty rank: Associate Professor
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longitude: -71.10208900000000
Person ID: 45487
person in primary position: Associate Professor of Medicine
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Mirzakhani, Hooman
eCommons Login: HM59
first name: Hooman
last name: Mirzakhani
full name: Hooman Mirzakhani, M.D., Ph.D.
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Person ID: 25665
person in primary position: Assistant Professor of Medicine
type: Agent
type: Person
preferred title: Assistant Professor of Medicine

McGeachie, Michael
eCommons Login: MJM28
first name: Michael
last name: McGeachie
full name: Michael John McGeachie, Ph.D.
has faculty rank: Assistant Professor
latitude: 42.33669100000000
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person in primary position: Assistant Professor of Medicine
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Manson, JoAnn
eCommons Login: JEM10
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last name: Manson
full name: JoAnn Manson, Dr.P.H., M.D.
has faculty rank: Full Professor
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Person ID: 30875
person in primary position: Michael and Lee Bell Professor of Women's Health
type: Agent
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preferred title: Michael and Lee Bell Professor of Women's Health

Hu, Frank
eCommons Login: FBH1
first name: Frank
last name: Hu
full name: Frank B. Hu, M.D., Ph.D.
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photo: https://connects.catalyst.harvard.edu/Profiles/profile/Modules/CustomViewPersonGeneralInfo/PhotoHandler.ashx
Person ID: 39913
person in primary position: Fredrick J. Stare Professor of Nutrition and Epidemiology
type: Agent
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BiocPkgTools: Toolkit for mining the Bioconductor package ecosystem.
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linked information resource: Subtyping COPD by Using Visual and Quantitative CT Imaging Features.

TFutils: Data structures for transcription factor bioinformatics.
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Subtyping COPD by Using Visual and Quantitative CT Imaging Features.
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linked information resource: Temporality of early-term abortions associated with mare reproductive loss syndrome in horses.

Authorship 1189869
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linked author: Carey, Vincent
linked information resource: Fecal short-chain fatty acids in pregnancy and offspring asthma and allergic outcomes.

Fecal short-chain fatty acids in pregnancy and offspring asthma and allergic outcomes.
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Authorship 15518
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Authorship 127731
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Authorship 146163
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Authorship 1207932
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linked information resource: Orchestrating single-cell analysis with Bioconductor.

Orchestrating single-cell analysis with Bioconductor.
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Publisher Correction: Orchestrating single-cell analysis with Bioconductor.
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linked information resource: Determinants and Measurement of Neonatal Vitamin D: Overestimation of 25(OH)D in Cord Blood Using CLIA Assay Technology.

Determinants and Measurement of Neonatal Vitamin D: Overestimation of 25(OH)D in Cord Blood Using CLIA Assay Technology.
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Six-Year Follow-up of a Trial of Antenatal Vitamin D for Asthma Reduction.
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Authorship 1223789
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linked information resource: Six-Year Follow-up of a Trial of Antenatal Vitamin D for Asthma Reduction.

Toward a gold standard for benchmarking gene set enrichment analysis.
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Authorship 177315
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linked information resource: Imaging-AMARETTO: An Imaging Genomics Software Tool to Interrogate Multiomics Networks for Relevance to Radiography and Histopathology Imaging Biomarkers of Clinical Outcomes.

Imaging-AMARETTO: An Imaging Genomics Software Tool to Interrogate Multiomics Networks for Relevance to Radiography and Histopathology Imaging Biomarkers of Clinical Outcomes.
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linked information resource: Pediatric AIDS prognosis using somatic growth velocity.

Authorship 1250841
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linked information resource: Global Alliance for Genomics and Health Meets Bioconductor: Toward Reproducible and Agile Cancer Genomics at Cloud Scale.

Global Alliance for Genomics and Health Meets Bioconductor: Toward Reproducible and Agile Cancer Genomics at Cloud Scale.
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linked information resource: Predictors of survival in severe, early onset COPD.

Authorship 151537
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linked information resource: Antimicrobial-specific cell-mediated immune reconstitution in children with advanced human immunodeficiency virus infection receiving highly active antiretroviral therapy.

Authorship 164002
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linked information resource: Reliability of CD4 quantitation in human immunodeficiency virus-positive children: implications for definition of immunologic response to highly active antiretroviral therapy.

Effect of early and late prenatal vitamin D and maternal asthma status on offspring asthma or recurrent wheeze.
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Authorship 193218
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linked information resource: Deregulated expression of fat and muscle genes in B-cell chronic lymphocytic leukemia with high lipoprotein lipase expression.

Early-pregnancy transcriptome signatures of preeclampsia: from peripheral blood to placenta.
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Authorship 1295780
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linked information resource: Analysis of a phase-variable restriction modification system of the human gut symbiont Bacteroides fragilis.

Analysis of a phase-variable restriction modification system of the human gut symbiont Bacteroides fragilis.
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linked information resource: Polysaccharide biosynthesis locus required for virulence of Bacteroides fragilis.

Authorship 134823
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linked information resource: Distribution of four capsular serotypes of Enterococcus faecalis among clinical isolates from different geographical origins and infection sites.

Authorship 1299739
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linked information resource: Multiomic Integration of Public Oncology Databases in Bioconductor.

Multiomic Integration of Public Oncology Databases in Bioconductor.
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Gentleman, Robert
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Authorship 1319706
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linked information resource: Mediterranean-DASH Intervention for Neurodegenerative Delay (MIND) study: Rationale, design and baseline characteristics of a randomized control trial of the MIND diet on cognitive decline.

Mediterranean-DASH Intervention for Neurodegenerative Delay (MIND) study: Rationale, design and baseline characteristics of a randomized control trial of the MIND diet on cognitive decline.
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linked information resource: Low gestational vitamin D level and childhood asthma are related to impaired lung function in high-risk children.

Low gestational vitamin D level and childhood asthma are related to impaired lung function in high-risk children.
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linked information resource: Steady-state pharmacokinetics of tenofovir-based regimens in HIV-infected pediatric patients.

Bioconductor: An Open-Source, Open-Development Computing Resource for Genomics
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Authorship 1344546
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linked information resource: Free-Living Standing Activity as Assessed by Seismic Accelerometers and Cognitive Function in Community-Dwelling Older Adults: The MIND Trial.

Free-Living Standing Activity as Assessed by Seismic Accelerometers and Cognitive Function in Community-Dwelling Older Adults: The MIND Trial.
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Authorship 16990
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linked information resource: Practice-level effects of interventions to improve asthma care in primary care settings: the Pediatric Asthma Care Patient Outcomes Research Team.

Authorship 1362749
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linked author: Carey, Vincent
linked information resource: Vitamin D Intake and Brain Cortical Thickness in Community-Dwelling Overweight Older Adults: A Cross-Sectional Study.

Vitamin D Intake and Brain Cortical Thickness in Community-Dwelling Overweight Older Adults: A Cross-Sectional Study.
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The Association of Prenatal Vitamin D Sufficiency With Aeroallergen Sensitization and Allergic Rhinitis in Early Childhood.
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linked information resource: The Association of Prenatal Vitamin D Sufficiency With Aeroallergen Sensitization and Allergic Rhinitis in Early Childhood.

Authorship 1382984
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linked information resource: Community-wide hackathons to identify central themes in single-cell multi-omics.

Community-wide hackathons to identify central themes in single-cell multi-omics.
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linked information resource: Author Correction: Community-wide hackathons to identify central themes in single-cell multi-omics.

Author Correction: Community-wide hackathons to identify central themes in single-cell multi-omics.
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information resource reference: Author Correction: Community-wide hackathons to identify central themes in single-cell multi-omics. Genome Biol. 2021 Aug 25; 22(1):246.
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linked information resource: Higher circulating a-carotene was associated with better cognitive function: an evaluation among the MIND trial participants.

Higher circulating a-carotene was associated with better cognitive function: an evaluation among the MIND trial participants.
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Durable Common Fund Data Interfaces and Tutorials with Bioconductor
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linked information resource: Properties of the Cognitive Function Battery for the MIND Diet Intervention to Prevent Alzheimer's Disease.

Properties of the Cognitive Function Battery for the MIND Diet Intervention to Prevent Alzheimer's Disease.
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Alpha-1 Antitrypsin MZ Heterozygosity Is an Endotype of Chronic Obstructive Pulmonary Disease.
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Authorship 1412628
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linked author: Carey, Vincent
linked information resource: Alpha-1 Antitrypsin MZ Heterozygosity Is an Endotype of Chronic Obstructive Pulmonary Disease.

Authorship 22975
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linked information resource: Steady-state pharmacokinetics of lopinavir/ritonavir in combination with efavirenz in human immunodeficiency virus-infected pediatric patients.

Authorship 1441421
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linked information resource: Inverting the model of genomics data sharing with the NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-space.

Inverting the model of genomics data sharing with the NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-space.
PubMed Identifier: 35199087
author list: Schatz MC, Philippakis AA, Afgan E, Banks E, Carey VJ, Carroll RJ, Culotti A, Ellrott K, Goecks J, Grossman RL, Hall IM, Hansen KD, Lawson J, Leek JT, Luria AO, Mosher S, Morgan M, Nekrutenko A, O'Connor BD, Osborn K, Paten B, Patterson C, Tan FJ, Taylor CO, Vessio J, Waldron L, Wang T, Wuichet K
published in: Cell genomics
information resource reference: Inverting the model of genomics data sharing with the NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-space. Cell Genom. 2022 Jan 12; 2(1).
journal title abbreviation: Cell Genom
publication date: 2022-01-12T00:00:00
year: 2022
type: Academic Article
type: Article
type: Document
type: Information Resource

Authorship 314325
type: Authorship
author rank in publication: 4
linked author: Carey, Vincent
linked information resource: Systemic steroid exposure is associated with differential methylation in chronic obstructive pulmonary disease.

Authorship 1464290
type: Authorship
author rank in publication: 7
linked author: Carey, Vincent
linked information resource: GenomicSuperSignature facilitates interpretation of RNA-seq experiments through robust, efficient comparison to public databases.

GenomicSuperSignature facilitates interpretation of RNA-seq experiments through robust, efficient comparison to public databases.
PubMed Identifier: 35760813
author list: Oh S, Geistlinger L, Ramos M, Blankenberg D, van den Beek M, Taroni JN, Carey VJ, Greene CS, Waldron L, Davis S
published in: Nature communications
information resource reference: GenomicSuperSignature facilitates interpretation of RNA-seq experiments through robust, efficient comparison to public databases. Nat Commun. 2022 06 27; 13(1):3695.
journal title abbreviation: Nat Commun
publication date: 2022-06-27T00:00:00
year: 2022
type: Academic Article
type: Article
type: Document
type: Information Resource

Authorship 1483189
type: Authorship
author rank in publication: 19
linked author: Carey, Vincent
linked information resource: The maternal prenatal and offspring early-life gut microbiome of childhood asthma phenotypes.

The maternal prenatal and offspring early-life gut microbiome of childhood asthma phenotypes.
PubMed Identifier: 36107703
author list: Lee-Sarwar KA, Chen YC, Chen YY, Kozyrskyj AL, Mandhane PJ, Turvey SE, Subbarao P, Bisgaard H, Stokholm J, Chawes B, Sørensen SJ, Kelly RS, Lasky-Su J, Zeiger RS, O'Connor GT, Sandel MT, Bacharier LB, Beigelman A, Carey VJ, Harshfield BJ, Laranjo N, Gold DR, Weiss ST, Litonjua AA
published in: Allergy
information resource reference: The maternal prenatal and offspring early-life gut microbiome of childhood asthma phenotypes. Allergy. 2023 02; 78(2):418-428.
journal title abbreviation: Allergy
publication date: 2022-09-24T00:00:00
year: 2022
type: Academic Article
type: Article
type: Document
type: Information Resource

Authorship 1504625
type: Authorship
author rank in publication: 5
linked author: Carey, Vincent
linked information resource: Maternal vitamin D status modifies the effects of early life tobacco exposure on child lung function.

Maternal vitamin D status modifies the effects of early life tobacco exposure on child lung function.
PubMed Identifier: 36400177
author list: Knihtilä HM, Huang M, Prince N, Stubbs BJ, Carey VJ, Laranjo N, Mirzakhani H, Zeiger RS, Bacharier LB, O'Connor GT, Litonjua AA, Weiss ST, Lasky-Su J
published in: The Journal of allergy and clinical immunology
information resource reference: Maternal vitamin D status modifies the effects of early life tobacco exposure on child lung function. J Allergy Clin Immunol. 2023 02; 151(2):556-564.
journal title abbreviation: J Allergy Clin Immunol
publication date: 2022-11-16T00:00:00
year: 2022
type: Academic Article
type: Article
type: Document
type: Information Resource

Authorship 197926
type: Authorship
author rank in publication: 8
linked author: Carey, Vincent
linked information resource: CT metrics of airway disease and emphysema in severe COPD.

Early-Life Weight Status and Risk of Childhood Asthma or Recurrent Wheeze in Preterm and Term Offspring.
PubMed Identifier: 37088369
author list: Shah J, Shadid ILC, Carey VJ, Laranjo N, O'Connor GT, Zeiger RS, Bacharier L, Litonjua AA, Weiss ST, Mirzakhani H
published in: The journal of allergy and clinical immunology. In practice
information resource reference: Early-Life Weight Status and Risk of Childhood Asthma or Recurrent Wheeze in Preterm and Term Offspring. J Allergy Clin Immunol Pract. 2023 07; 11(7):2125-2132.e1.
journal title abbreviation: J Allergy Clin Immunol Pract
publication date: 2023-04-23T00:00:00
year: 2023
type: Academic Article
type: Article
type: Document
type: Information Resource

Assistant Professor of Medicine
is primary position: true
position in department: Medicine
position in division: Channing Division of Network Medicine
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HR job title: Assistant Professor of Medicine
position in organization: Brigham and Women's Hospital

The relationship of fetal sex and maternal race and ethnicity with early and late pregnancy C-reactive protein and interleukin-8.
PubMed Identifier: 37491932
author list: Jha A, Baumann N, Shadid I, Shah J, Chen YS, Lee-Sarwar KA, Zeiger RS, O'Connor GT, Bacharier LB, Carey VJ, Laranjo N, Fichorova RN, Litonjua AA, Weiss ST, Mirzakhani H
published in: American journal of reproductive immunology (New York, N.Y. : 1989)
information resource reference: The relationship of fetal sex and maternal race and ethnicity with early and late pregnancy C-reactive protein and interleukin-8. Am J Reprod Immunol. 2023 08; 90(2):e13746.
journal title abbreviation: Am J Reprod Immunol
publication date: 2023-08-01T00:00:00
year: 2023
type: Academic Article
type: Article
type: Document
type: Information Resource

Authorship 1570647
type: Authorship
author rank in publication: 10
linked author: Carey, Vincent
linked information resource: The relationship of fetal sex and maternal race and ethnicity with early and late pregnancy C-reactive protein and interleukin-8.

Authorship 1569153
type: Authorship
author rank in publication: 4
linked author: Carey, Vincent
linked information resource: Trial of the MIND Diet for Prevention of Cognitive Decline in Older Persons.

Authorship 1572132
type: Authorship
author rank in publication: 5
linked author: Carey, Vincent
linked information resource: Democratizing knowledge representation with BioCypher.

Authorship 1570088
type: Authorship
author rank in publication: 4
linked author: Carey, Vincent
linked information resource: RaggedExperiment: the missing link between genomic ranges and matrices in Bioconductor.

Authorship 1567107
type: Authorship
author rank in publication: 3
linked author: Carey, Vincent
linked information resource: Early-Life Weight Status and Risk of Childhood Asthma or Recurrent Wheeze in Preterm and Term Offspring.

Authorship 1567651
type: Authorship
author rank in publication: 11
linked author: Carey, Vincent
linked information resource: Omega-3 Fatty Acids Interact with DPP10 Region Genotype in Association with Childhood Atopy.

Democratizing knowledge representation with BioCypher.
PubMed Identifier: 37337100
author list: Lobentanzer S, Aloy P, Baumbach J, Bohar B, Carey VJ, Charoentong P, Danhauser K, Dogan T, Dreo J, Dunham I, Farr E, Fernandez-Torras A, Gyori BM, Hartung M, Hoyt CT, Klein C, Korcsmaros T, Maier A, Mann M, Ochoa D, Pareja-Lorente E, Popp F, Preusse M, Probul N, Schwikowski B, Sen B, Strauss MT, Turei D, Ulusoy E, Waltemath D, Wodke JAH, Saez-Rodriguez J
published in: Nature biotechnology
information resource reference: Democratizing knowledge representation with BioCypher. Nat Biotechnol. 2023 Aug; 41(8):1056-1059.
journal title abbreviation: Nat Biotechnol
publication date: 2023-08-01T00:00:00
year: 2023
type: Academic Article
type: Article
type: Document
type: Information Resource

RaggedExperiment: the missing link between genomic ranges and matrices in Bioconductor.
PubMed Identifier: 37208161
author list: Ramos M, Morgan M, Geistlinger L, Carey VJ, Waldron L
published in: Bioinformatics (Oxford, England)
information resource reference: RaggedExperiment: the missing link between genomic ranges and matrices in Bioconductor. Bioinformatics. 2023 06 01; 39(6).
journal title abbreviation: Bioinformatics
publication date: 2023-06-01T00:00:00
year: 2023
type: Academic Article
type: Article
type: Document
type: Information Resource

Trial of the MIND Diet for Prevention of Cognitive Decline in Older Persons.
PubMed Identifier: 37466280
author list: Barnes LL, Dhana K, Liu X, Carey VJ, Ventrelle J, Johnson K, Hollings CS, Bishop L, Laranjo N, Stubbs BJ, Reilly X, Agarwal P, Zhang S, Grodstein F, Tangney CC, Holland TM, Aggarwal NT, Arfanakis K, Morris MC, Sacks FM
published in: The New England journal of medicine
information resource reference: Trial of the MIND Diet for Prevention of Cognitive Decline in Older Persons. N Engl J Med. 2023 08 17; 389(7):602-611.
journal title abbreviation: N Engl J Med
publication date: 2023-07-18T00:00:00
year: 2023
type: Academic Article
type: Article
type: Document
type: Information Resource

Omega-3 Fatty Acids Interact with DPP10 Region Genotype in Association with Childhood Atopy.
PubMed Identifier: 37242299
author list: Lee-Sarwar KA, Fischer-Rasmussen K, Bønnelykke K, Bisgaard H, Chawes B, Kelly RS, Lasky-Su J, Zeiger RS, O'Connor GT, Bacharier LB, Carey VJ, Laranjo N, Litonjua AA, Weiss ST
published in: Nutrients
information resource reference: Omega-3 Fatty Acids Interact with DPP10 Region Genotype in Association with Childhood Atopy. Nutrients. 2023 May 22; 15(10).
journal title abbreviation: Nutrients
publication date: 2023-05-22T00:00:00
year: 2023
type: Academic Article
type: Article
type: Document
type: Information Resource

Authorship 1585639
type: Authorship
author rank in publication: 9
linked author: Carey, Vincent
linked information resource: Curated single cell multimodal landmark datasets for R/Bioconductor.

Authorship 1587553
type: Authorship
author rank in publication: 15
linked author: Carey, Vincent
linked information resource: BugSigDB captures patterns of differential abundance across a broad range of host-associated microbial signatures.

BugSigDB captures patterns of differential abundance across a broad range of host-associated microbial signatures.
PubMed Identifier: 37697152
author list: Geistlinger L, Mirzayi C, Zohra F, Azhar R, Elsafoury S, Grieve C, Wokaty J, Gamboa-Tuz SD, Sengupta P, Hecht I, Ravikrishnan A, Gonçalves RS, Franzosa E, Raman K, Carey V, Dowd JB, Jones HE, Davis S, Segata N, Huttenhower C, Waldron L
published in: Nature biotechnology
information resource reference: BugSigDB captures patterns of differential abundance across a broad range of host-associated microbial signatures. Nat Biotechnol. 2024 May; 42(5):790-802.
journal title abbreviation: Nat Biotechnol
publication date: 2023-09-11T00:00:00
year: 2023
type: Academic Article
type: Article
type: Document
type: Information Resource

Curated single cell multimodal landmark datasets for R/Bioconductor.
PubMed Identifier: 37624866
author list: Eckenrode KB, Righelli D, Ramos M, Argelaguet R, Vanderaa C, Geistlinger L, Culhane AC, Gatto L, Carey V, Morgan M, Risso D, Waldron L
published in: PLoS computational biology
information resource reference: Curated single cell multimodal landmark datasets for R/Bioconductor. PLoS Comput Biol. 2023 08; 19(8):e1011324.
journal title abbreviation: PLoS Comput Biol
publication date: 2023-08-25T00:00:00
year: 2023
type: Academic Article
type: Article
type: Document
type: Information Resource

Prenatal vitamin D supplementation to prevent childhood asthma: 15-year results from the Vitamin D Antenatal Asthma Reduction Trial (VDAART).
PubMed Identifier: 37852328
author list: Weiss ST, Mirzakhani H, Carey VJ, O'Connor GT, Zeiger RS, Bacharier LB, Stokes J, Litonjua AA
published in: The Journal of allergy and clinical immunology
information resource reference: Prenatal vitamin D supplementation to prevent childhood asthma: 15-year results from the Vitamin D Antenatal Asthma Reduction Trial (VDAART). J Allergy Clin Immunol. 2024 02; 153(2):378-388.
journal title abbreviation: J Allergy Clin Immunol
publication date: 2023-10-16T00:00:00
year: 2023
type: Academic Article
type: Article
type: Document
type: Information Resource

Authorship 1601101
type: Authorship
author rank in publication: 3
linked author: Carey, Vincent
linked information resource: Prenatal vitamin D supplementation to prevent childhood asthma: 15-year results from the Vitamin D Antenatal Asthma Reduction Trial (VDAART).

Authorship 185486
type: Authorship
author rank in publication: 2
linked author: Carey, Vincent
linked information resource: Ubiquitin conjugate dynamics in the gut and liver of hibernating ground squirrels.

Authorship 470714
type: Authorship
author rank in publication: 6
linked author: Carey, Vincent
linked information resource: Bronchodilator responsiveness and serum total IgE levels in families of probands with severe early-onset COPD.

Early life gut microbiome in children following spontaneous preterm birth and maternal preeclampsia.
PubMed Identifier: 38025771
author list: Shadid ILC, Lee-Sarwar K, Lu Z, Yadama A, Laranjo N, Carey V, O'Connor GT, Zeiger RS, Bacharier L, Guchelaar HJ, Liu YY, Litonjua AA, Weiss ST, Mirzakhani H
published in: iScience
information resource reference: Early life gut microbiome in children following spontaneous preterm birth and maternal preeclampsia. iScience. 2023 Dec 15; 26(12):108311.
journal title abbreviation: iScience
publication date: 2023-10-28T00:00:00
year: 2023
type: Academic Article
type: Article
type: Document
type: Information Resource

Authorship 1611654
type: Authorship
author rank in publication: 6
linked author: Carey, Vincent
linked information resource: Early life gut microbiome in children following spontaneous preterm birth and maternal preeclampsia.

Authorship 1622695
type: Authorship
author rank in publication: 3
linked author: Carey, Vincent
linked information resource: Preschool impulse oscillometry predicts active asthma and impaired lung function at school age.

Preschool impulse oscillometry predicts active asthma and impaired lung function at school age.
PubMed Identifier: 38244724
author list: Knihtilä HM, Stubbs BJ, Carey VJ, Laranjo N, Zeiger RS, Bacharier LB, O'Connor GT, Weiss ST, Litonjua AA
published in: The Journal of allergy and clinical immunology
information resource reference: Preschool impulse oscillometry predicts active asthma and impaired lung function at school age. J Allergy Clin Immunol. 2024 Jul; 154(1):94-100.e13.
journal title abbreviation: J Allergy Clin Immunol
publication date: 2024-01-18T00:00:00
year: 2024
type: Academic Article
type: Article
type: Document
type: Information Resource

Authorship 568954
type: Authorship
author rank in publication: 6
linked author: Carey, Vincent
linked information resource: Analysis of histone 2B-GFP retention reveals slowly cycling hematopoietic stem cells.

Authorship 586860
type: Authorship
linked author: Carey, Vincent
linked information resource: Working correlation structure misspecification, estimation and covariate design: implications for GEE performance

Authorship 609416
type: Authorship
linked author: Carey, Vincent
linked information resource: Modelling multivariate binary data with alternating logistic regressions

Authorship 158145
type: Authorship
author rank in publication: 3
linked author: Carey, Vincent
linked information resource: Effects of 4 weight-loss diets differing in fat, protein, and carbohydrate on fat mass, lean mass, visceral adipose tissue, and hepatic fat: results from the POUNDS LOST trial.

Authorship 232708
type: Authorship
author rank in publication: 1
linked author: Carey, Vincent
linked information resource: Working covariance model selection for generalized estimating equations.

Authorship 262048
type: Authorship
author rank in publication: 5
linked author: Carey, Vincent
linked information resource: Use of capsular polysaccharide-tetanus toxoid conjugate vaccine for type II group B Streptococcus in healthy women.

Assistant Professor of Medicine
is primary position: true
position in department: Medicine
position in division: Channing Division of Network Medicine
sort order: 1
type: Position
HR job title: Assistant Professor of Medicine
position in organization: Brigham and Women's Hospital

Authorship 1653591
type: Authorship
author rank in publication: 5
linked author: Carey, Vincent
linked information resource: AnVILWorkflow: A runnable workflow package for Cloud-implemented bioinformatics analysis pipelines.

Authorship 1653832
type: Authorship
author rank in publication: 3
linked author: Carey, Vincent
linked information resource: Chronic Obstructive Pulmonary Disease Exacerbations Increase the Risk of Subsequent Cardiovascular Events: A Longitudinal Analysis of the COPDGene Study.

Authorship 1652992
type: Authorship
author rank in publication: 13
linked author: Carey, Vincent
linked information resource: A multi-organ map of the human immune system across age, sex and ethnicity.

AnVILWorkflow: A runnable workflow package for Cloud-implemented bioinformatics analysis pipelines.
PubMed Identifier: 38798429
author list: Oh S, Gravel-Pucillo K, Ramos M, Davis S, Carey V, Morgan M, Waldron L
published in: Research square
information resource reference: AnVILWorkflow: A runnable workflow package for Cloud-implemented bioinformatics analysis pipelines. Res Sq. 2024 May 15.
journal title abbreviation: Res Sq
publication date: 2024-05-15T00:00:00
year: 2024
type: Academic Article
type: Article
type: Document
type: Information Resource

Chronic Obstructive Pulmonary Disease Exacerbations Increase the Risk of Subsequent Cardiovascular Events: A Longitudinal Analysis of the COPDGene Study.
PubMed Identifier: 38818936
author list: Yang HM, Ryu MH, Carey VJ, Kinney GL, Hokanson JE, Dransfield MT, Hersh CP, Silverman EK
published in: Journal of the American Heart Association
information resource reference: Chronic Obstructive Pulmonary Disease Exacerbations Increase the Risk of Subsequent Cardiovascular Events: A Longitudinal Analysis of the COPDGene Study. J Am Heart Assoc. 2024 Jun 04; 13(11):e033882.
journal title abbreviation: J Am Heart Assoc
publication date: 2024-05-31T00:00:00
year: 2024
type: Academic Article
type: Article
type: Document
type: Information Resource

A multi-organ map of the human immune system across age, sex and ethnicity.
PubMed Identifier: 38746418
author list: Mangiola S, Milton M, Ranathunga N, Li-Wai-Suen C, Odainic A, Yang E, Hutchison W, Garnham A, Iskander J, Pal B, Yadav V, Rossello J, Carey VJ, Morgan M, Bedoui S, Kallies A, Papenfuss AT
published in: bioRxiv : the preprint server for biology
information resource reference: A multi-organ map of the human immune system across age, sex and ethnicity. bioRxiv. 2024 Apr 29.
journal title abbreviation: bioRxiv
publication date: 2024-04-29T00:00:00
year: 2024
type: Academic Article
type: Article
type: Document
type: Information Resource

Professor of Medicine
is primary position: true
position in department: Medicine
position in division: Channing Division of Network Medicine
sort order: 1
type: Position
HR job title: Professor of Medicine
position in organization: Brigham and Women's Hospital

Authorship 402825
type: Authorship
author rank in publication: 5
linked author: Carey, Vincent
linked information resource: Dietary interventions that lower lipoproteins containing apolipoprotein C-III are more effective in whites than in blacks: results of the OmniHeart trial.

Authorship 408910
type: Authorship
author rank in publication: 3
linked author: Carey, Vincent
linked information resource: Case-control study of early-term abortions (early fetal losses) associated with mare reproductive loss syndrome in central Kentucky.

Authorship 413820
type: Authorship
author rank in publication: 5
linked author: Carey, Vincent
linked information resource: Effect of cigarette smoking on the pulmonary function of children and adolescents.

Authorship 1669520
type: Authorship
author rank in publication: 3
linked author: Carey, Vincent
linked information resource: Differential Association of COPD Subtypes With Cardiovascular Events and COPD Exacerbations.

Differential Association of COPD Subtypes With Cardiovascular Events and COPD Exacerbations.
PubMed Identifier: 39094733
author list: Yang HM, Ryu MH, Carey VJ, Young K, Kinney GL, Dransfield MT, Wade RC, Wells JM, Budoff MJ, Castaldi PJ, Hersh CP, Silverman EK
published in: Chest
information resource reference: Differential Association of COPD Subtypes With Cardiovascular Events and COPD Exacerbations. Chest. 2024 Dec; 166(6):1360-1370.
journal title abbreviation: Chest
publication date: 2024-07-31T00:00:00
year: 2024
type: Academic Article
type: Article
type: Document
type: Information Resource

Professor of Medicine
is primary position: true
position in department: Medicine
position in division: Channing Division of Network Medicine
sort order: 1
type: Position
HR job title: Professor of Medicine
position in organization: Brigham and Women's Hospital

Assistant Professor of Medicine
is primary position: true
position in department: Medicine
position in division: Channing Division of Network Medicine
sort order: 1
type: Position
HR job title: Assistant Professor of Medicine
position in organization: Brigham and Women's Hospital

Authorship 488986
type: Authorship
author rank in publication: 3
linked author: Carey, Vincent
linked information resource: A role for Wnt signaling genes in the pathogenesis of impaired lung function in asthma.

Authorship 600209
type: Authorship
linked author: Carey, Vincent
linked information resource: GGtools: software for genetics of gene expression

Authorship 646789
type: Authorship
author rank in publication: 8
linked author: Carey, Vincent
linked information resource: Isoniazid pharmacokinetics, pharmacodynamics, and dosing in South African infants.

Authorship 648956
type: Authorship
author rank in publication: 8
linked author: Carey, Vincent
linked information resource: Software for computing and annotating genomic ranges.

Software for computing and annotating genomic ranges.
PubMed Identifier: 23950696
author list: Lawrence M, Huber W, Pagès H, Aboyoun P, Carlson M, Gentleman R, Morgan MT, Carey VJ
published in: PLoS computational biology
information resource reference: Software for computing and annotating genomic ranges. PLoS Comput Biol. 2013; 9(8):e1003118.
journal title abbreviation: PLoS Comput Biol
publication date: 2013-08-08T00:00:00
year: 2013
type: Academic Article
type: Article
type: Document
type: Information Resource

Isoniazid pharmacokinetics, pharmacodynamics, and dosing in South African infants.
PubMed Identifier: 22695364
author list: Kiser JJ, Zhu R, D'Argenio DZ, Cotton MF, Bobat R, McSherry GD, Madhi SA, Carey VJ, Seifart HI, Werely CJ, Fletcher CV
published in: Therapeutic drug monitoring
information resource reference: Isoniazid pharmacokinetics, pharmacodynamics, and dosing in South African infants. Ther Drug Monit. 2012 Aug; 34(4):446-51.
journal title abbreviation: Ther Drug Monit
publication date: 2012-08-01T00:00:00
year: 2012
type: Academic Article
type: Article
type: Document
type: Information Resource

Authorship 1694350
type: Authorship
author rank in publication: 11
linked author: Carey, Vincent
linked information resource: Partial correlation network analysis identifies coordinated gene expression within a regional cluster of COPD genome-wide association signals.

Partial correlation network analysis identifies coordinated gene expression within a regional cluster of COPD genome-wide association signals.
PubMed Identifier: 39418301
author list: Gentili M, Glass K, Maiorino E, Hobbs BD, Xu Z, Castaldi PJ, Cho MH, Hersh CP, Qiao D, Morrow JD, Carey VJ, Platig J, Silverman EK
published in: PLoS computational biology
information resource reference: Partial correlation network analysis identifies coordinated gene expression within a regional cluster of COPD genome-wide association signals. PLoS Comput Biol. 2024 Oct; 20(10):e1011079.
journal title abbreviation: PLoS Comput Biol
publication date: 2024-10-17T00:00:00
year: 2024
type: Academic Article
type: Article
type: Document
type: Information Resource

Authorship 175144
type: Authorship
author rank in publication: 4
linked author: Carey, Vincent
linked information resource: Case-control study of factors associated with fibrinous pericarditis among horses in central Kentucky during spring 2001.

Authorship 19813
type: Authorship
author rank in publication: 3
linked author: Carey, Vincent
linked information resource: Confidence interval for rate ratio in a 2 x 2 table with structural zero: an application in assessing false-negative rate ratio when combining two diagnostic tests.

Authorship 1706655
type: Authorship
author rank in publication: 2
linked author: Carey, Vincent
linked information resource: Integrative epidemiology and immunotranscriptomics uncover a risk and potential mechanism for cutaneous lymphoma unmasking or progression with dupilumab therapy.

Integrative epidemiology and immunotranscriptomics uncover a risk and potential mechanism for cutaneous lymphoma unmasking or progression with dupilumab therapy.
PubMed Identifier: 39521279
author list: Cabrera-Perez JS, Carey VJ, Odejide OO, Singh S, Kupper TS, Pillai SS, Weiss ST, Akenroye A
published in: The Journal of allergy and clinical immunology
information resource reference: Integrative epidemiology and immunotranscriptomics uncover a risk and potential mechanism for cutaneous lymphoma unmasking or progression with dupilumab therapy. J Allergy Clin Immunol. 2025 May; 155(5):1584-1594.
journal title abbreviation: J Allergy Clin Immunol
publication date: 2024-11-07T00:00:00
year: 2024
type: Academic Article
type: Article
type: Document
type: Information Resource

AnVILWorkflow: A runnable workflow package for Cloud-implemented bioinformatics analysis pipelines.
PubMed Identifier: 39669685
author list: Oh S, Gravel-Pucillo K, Ramos M, Schatz MC, Davis S, Carey V, Morgan M, Waldron L
published in: F1000Research
information resource reference: AnVILWorkflow: A runnable workflow package for Cloud-implemented bioinformatics analysis pipelines. F1000Res. 2024; 13:1257.
journal title abbreviation: F1000Res
publication date: 2024-10-21T00:00:00
year: 2024
type: Academic Article
type: Article
type: Document
type: Information Resource

Authorship 1719740
type: Authorship
author rank in publication: 6
linked author: Carey, Vincent
linked information resource: AnVILWorkflow: A runnable workflow package for Cloud-implemented bioinformatics analysis pipelines.

Authorship 598702
type: Authorship
linked author: Carey, Vincent
linked information resource: An approach to heteroskedastic modeling

Vitamin D Supplementation, Chronic Obstructive Lung Disease and Asthma Exacerbations, and Lung Function Decline.
PubMed Identifier: 39922497
author list: Gold DR, Carey VJ, Hersh CP, Wan E, Camargo CA, Lee IM, Cook NR, Nassikas N, Buring JE, Manson JE, Luttmann-Gibson H
published in: The Journal of nutrition
information resource reference: Vitamin D Supplementation, Chronic Obstructive Lung Disease and Asthma Exacerbations, and Lung Function Decline. J Nutr. 2025 May; 155(5):1417-1428.
journal title abbreviation: J Nutr
publication date: 2025-02-06T00:00:00
year: 2025
type: Academic Article
type: Article
type: Document
type: Information Resource

Authorship 679309
type: Authorship
author rank in publication: 2
linked author: Carey, Vincent
linked information resource: Identification of Kaposi's sarcoma-associated herpesvirus LANA regions important for episome segregation, replication, and persistence.

Authorship 680352
type: Authorship
author rank in publication: 7
linked author: Carey, Vincent
linked information resource: Expressomal approach for comprehensive analysis and visualization of ligand sensitivities of xenoestrogen responsive genes.

Identification of Kaposi's sarcoma-associated herpesvirus LANA regions important for episome segregation, replication, and persistence.
PubMed Identifier: 24006437
author list: Vázquez Ede L, Carey VJ, Kaye KM
published in: Journal of virology
information resource reference: Identification of Kaposi's sarcoma-associated herpesvirus LANA regions important for episome segregation, replication, and persistence. J Virol. 2013 Nov; 87(22):12270-83.
journal title abbreviation: J Virol
publication date: 2013-09-04T00:00:00
year: 2013
type: Academic Article
type: Article
type: Document
type: Information Resource

Expressomal approach for comprehensive analysis and visualization of ligand sensitivities of xenoestrogen responsive genes.
PubMed Identifier: 24062438
author list: Shioda T, Rosenthal NF, Coser KR, Suto M, Phatak M, Medvedovic M, Carey VJ, Isselbacher KJ
published in: Proceedings of the National Academy of Sciences of the United States of America
information resource reference: Expressomal approach for comprehensive analysis and visualization of ligand sensitivities of xenoestrogen responsive genes. Proc Natl Acad Sci U S A. 2013 Oct 08; 110(41):16508-13.
journal title abbreviation: Proc Natl Acad Sci U S A
publication date: 2013-09-23T00:00:00
year: 2013
type: Academic Article
type: Article
type: Document
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Authorship 273439
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Impact of maternal body mass index (BMI) and gestational weight gain on offspring's weight and BMI z-scores across the first 8?years of life.
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DNA-methylation markers associated with lung function at birth and childhood reveal early life programming of inflammatory pathways.
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Maternal antibody at delivery protects neonates from early onset group B streptococcal disease.
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Genome-wide interaction studies reveal sex-specific asthma risk alleles.
PubMed Identifier: 24824216
author list: Myers RA, Scott NM, Gauderman WJ, Qiu W, Mathias RA, Romieu I, Levin AM, Pino-Yanes M, Graves PE, Villarreal AB, Beaty TH, Carey VJ, Croteau-Chonka DC, del Rio Navarro B, Edlund C, Hernandez-Cadena L, Navarro-Olivos E, Padhukasahasram B, Salam MT, Torgerson DG, Van den Berg DJ, Vora H, Bleecker ER, Meyers DA, Williams LK, Martinez FD, Burchard EG, Barnes KC, Gilliland FD, Weiss ST, London SJ, Raby BA, Ober C, Nicolae DL
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Improving the FAIRness and Sustainability of the NHGRI Resources Ecosystem.
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Bioconductor's Computational Ecosystem for Genomic Data Science in Cancer.
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Nutrition Effects on Brain Outcomes and Recovery in Stroke after Hospitalization (NOURISH): Randomized controlled trial protocol and rationale.
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Meta-analysis of 22,710 human microbiome metagenomes defines an oral-to-gut microbial enrichment score and associations with host health and disease.
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Benchmarking large-scale single-cell RNA-seq analysis.
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linked information resource: Prenatal tobacco smoke exposure is associated with childhood DNA CpG methylation.

Prenatal tobacco smoke exposure is associated with childhood DNA CpG methylation.
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VariantAnnotation: a Bioconductor package for exploration and annotation of genetic variants.
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linked information resource: Tandem repeat deletion in the alpha C protein of group B streptococcus is recA independent.

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linked information resource: Predictors of decline in CD4 lymphocytes in a cohort of homosexual men infected with human immunodeficiency virus.

A genome-wide survey of CD4(+) lymphocyte regulatory genetic variants identifies novel asthma genes.
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linked information resource: Pharmacogenomics: novel loci identification via integrating gene differential analysis and eQTL analysis.

Pharmacogenomics: novel loci identification via integrating gene differential analysis and eQTL analysis.
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Circadian rhythm reprogramming during lung inflammation.
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linked information resource: Genome-wide interaction studies reveal sex-specific asthma risk alleles.

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linked information resource: Obesity favors apolipoprotein E- and C-III-containing high density lipoprotein subfractions associated with risk of heart disease.

Obesity favors apolipoprotein E- and C-III-containing high density lipoprotein subfractions associated with risk of heart disease.
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linked information resource: Predictors of repeated wheeze in the first year of life: the relative roles of cockroach, birth weight, acute lower respiratory illness, and maternal smoking.

Peripheral CD5+ B cells in antineutrophil cytoplasmic antibody-associated vasculitis.
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linked information resource: Effect of protein, unsaturated fat, and carbohydrate intakes on plasma apolipoprotein B and VLDL and LDL containing apolipoprotein C-III: results from the OmniHeart Trial.

Emergency Medicine
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linked information resource: A genome-wide survey of CD4(+) lymphocyte regulatory genetic variants identifies novel asthma genes.

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linked information resource: Fetal lung and placental methylation is associated with in utero nicotine exposure.

Authorship 775007
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linked author: Carey, Vincent
linked information resource: Effects of high vs low glycemic index of dietary carbohydrate on cardiovascular disease risk factors and insulin sensitivity: the OmniCarb randomized clinical trial.

Fetal lung and placental methylation is associated with in utero nicotine exposure.
PubMed Identifier: 25482056
author list: Chhabra D, Sharma S, Kho AT, Gaedigk R, Vyhlidal CA, Leeder JS, Morrow J, Carey VJ, Weiss ST, Tantisira KG, DeMeo DL
published in: Epigenetics
information resource reference: Fetal lung and placental methylation is associated with in utero nicotine exposure. Epigenetics. 2014 Nov; 9(11):1473-84.
journal title abbreviation: Epigenetics
publication date: 2014-11-01T00:00:00
year: 2014
type: Academic Article
type: Article
type: Document
type: Information Resource

Effects of high vs low glycemic index of dietary carbohydrate on cardiovascular disease risk factors and insulin sensitivity: the OmniCarb randomized clinical trial.
PubMed Identifier: 25514303
author list: Sacks FM, Carey VJ, Anderson CA, Miller ER, Copeland T, Charleston J, Harshfield BJ, Laranjo N, McCarron P, Swain J, White K, Yee K, Appel LJ
published in: JAMA
information resource reference: Effects of high vs low glycemic index of dietary carbohydrate on cardiovascular disease risk factors and insulin sensitivity: the OmniCarb randomized clinical trial. JAMA. 2014 Dec 17; 312(23):2531-41.
journal title abbreviation: JAMA
publication date: 2014-12-17T00:00:00
year: 2014
type: Academic Article
type: Article
type: Document
type: Information Resource

Authorship 528676
type: Authorship
author rank in publication: 30
linked author: Carey, Vincent
linked information resource: Genome-wide association analysis in asthma subjects identifies SPATS2L as a novel bronchodilator response gene.

Authorship 562637
type: Authorship
author rank in publication: 2
linked author: Carey, Vincent
linked information resource: Can comparison of MZ- and DZ-twin concordance rates be used invariably to estimate heritability?

Authorship 688
type: Authorship
author rank in publication: 1
linked author: Carey, Vincent
linked information resource: Interpreting genetics of gene expression: integrative architecture in Bioconductor.

Authorship 262222
type: Authorship
author rank in publication: 11
linked author: Carey, Vincent
linked information resource: Early behavioral adherence predicts short and long-term weight loss in the POUNDS LOST study.

Authorship 571077
type: Authorship
author rank in publication: 2
linked author: Carey, Vincent
linked information resource: Graphs in molecular biology.

Smoking-Associated Site-Specific Differential Methylation in Buccal Mucosa in the COPDGene Study.
PubMed Identifier: 25517428
author list: Wan ES, Qiu W, Carey VJ, Morrow J, Bacherman H, Foreman MG, Hokanson JE, Bowler RP, Crapo JD, DeMeo DL
published in: American journal of respiratory cell and molecular biology
information resource reference: Smoking-Associated Site-Specific Differential Methylation in Buccal Mucosa in the COPDGene Study. Am J Respir Cell Mol Biol. 2015 Aug; 53(2):246-54.
journal title abbreviation: Am J Respir Cell Mol Biol
publication date: 2015-08-01T00:00:00
year: 2015
type: Academic Article
type: Article
type: Document
type: Information Resource

Authorship 73246
type: Authorship
author rank in publication: 3
linked author: Carey, Vincent
linked information resource: Platform dependence of inference on gene-wise and gene-set involvement in human lung development.

Authorship 476265
type: Authorship
author rank in publication: 3
linked author: Carey, Vincent
linked information resource: The unseen sample in cohort studies: estimation of its size and effect. Multicenter AIDS Cohort Study.

Authorship 438565
type: Authorship
author rank in publication: 1
linked author: Carey, Vincent
linked information resource: Childhood injury mortality in New South Wales: geographical and socio-economic variations.

Authorship 45898
type: Authorship
author rank in publication: 3
linked author: Carey, Vincent
linked information resource: Cox regression models for intermediate events, with discharge from hospital as an example.

Authorship 484343
type: Authorship
author rank in publication: 2
linked author: Carey, Vincent
linked information resource: Descriptive epidemiology of late-term abortions associated with the mare reproductive loss syndrome in central Kentucky.

Authorship 165017
type: Authorship
author rank in publication: 3
linked author: Carey, Vincent
linked information resource: T69D/N pol mutation, human immunodeficiency virus type 1 RNA levels, and syncytium-inducing phenotype are associated with CD4 cell depletion during didanosine therapy.

Authorship 22845
type: Authorship
author rank in publication: 6
linked author: Carey, Vincent
linked information resource: Combining effects from rare and common genetic variants in an exome-wide association study of sequence data.

Authorship 603558
type: Authorship
linked author: Carey, Vincent
linked information resource: Literate statistical programming: concepts and tools

Authorship 231427
type: Authorship
author rank in publication: 4
linked author: Carey, Vincent
linked information resource: Annual variability in methacholine responsiveness in nonasthmatic working adults.

Authorship 588928
type: Authorship
linked author: Carey, Vincent
linked information resource: S-plus and C routines for the solution of generalized estimating equations

Authorship 575453
type: Authorship
author rank in publication: 7
linked author: Carey, Vincent
linked information resource: Gastric and duodenal safety of daily alendronate.

Authorship 176190
type: Authorship
author rank in publication: 5
linked author: Carey, Vincent
linked information resource: [The REALIST (REsiduAl risk, LIpids and Standard Therapies) study: an analysis of residual risk attributable to lipid profile in acute coronary syndrome].

Authorship 18877
type: Authorship
author rank in publication: 8
linked author: Carey, Vincent
linked information resource: Effect of diet composition on energy expenditure during weight loss: the POUNDS LOST Study.

Authorship 619863
type: Authorship
linked author: Carey, Vincent
linked information resource: Visualization and annotation of genomic experiments

Authorship 265650
type: Authorship
author rank in publication: 3
linked author: Carey, Vincent
linked information resource: Regression analysis in the presence of heterogeneous intraclass correlations.

Authorship 101
type: Authorship
author rank in publication: 2
linked author: Carey, Vincent
linked information resource: Estimation of design effects and diarrhea clustering within households and villages.

Authorship 419909
type: Authorship
author rank in publication: 1
linked author: Carey, Vincent
linked information resource: Using hypertext and the Internet for structure and management of observational studies.

Authorship 261315
type: Authorship
author rank in publication: 3
linked author: Carey, Vincent
linked information resource: A prospective study of pregravid determinants of gestational diabetes mellitus.

Authorship 309555
type: Authorship
author rank in publication: 8
linked author: Carey, Vincent
linked information resource: The CD4+ T-cell transcriptome and serum IgE in asthma: IL17RB and the role of sex.

Authorship 220539
type: Authorship
author rank in publication: 2
linked author: Carey, Vincent
linked information resource: Combination lipid therapy in type 2 diabetes.

Authorship 475860
type: Authorship
author rank in publication: 3
linked author: Carey, Vincent
linked information resource: Importing MAGE-ML format microarray data into BioConductor.

Authorship 509752
type: Authorship
author rank in publication: 3
linked author: Carey, Vincent
linked information resource: Immune reconstitution after receipt of highly active antiretroviral therapy in children with advanced or progressive HIV disease and complete or partial viral load response.

Authorship 528440
type: Authorship
author rank in publication: 5
linked author: Carey, Vincent
linked information resource: Fish consumption and risk of sudden cardiac death.

Authorship 391438
type: Authorship
author rank in publication: 3
linked author: Carey, Vincent
linked information resource: Quantifying differential gene connectivity between disease states for objective identification of disease-relevant genes.

Authorship 562361
type: Authorship
author rank in publication: 4
linked author: Carey, Vincent
linked information resource: Cigarette smoking behaviors and time since quitting are associated with differential DNA methylation across the human genome.

Authorship 603015
type: Authorship
linked author: Carey, Vincent
linked information resource: Case studies using graphs on biological data

Authorship 393061
type: Authorship
author rank in publication: 2
linked author: Carey, Vincent
linked information resource: Machine learning and its applications to biology.

Authorship 444230
type: Authorship
author rank in publication: 3
linked author: Carey, Vincent
linked information resource: An embryonic stem cell-like gene expression signature in poorly differentiated aggressive human tumors.

Authorship 269727
type: Authorship
author rank in publication: 4
linked author: Carey, Vincent
linked information resource: Tracking of markers and onset of disease among HIV-1 seroconverters.

Authorship 313331
type: Authorship
author rank in publication: 2
linked author: Carey, Vincent
linked information resource: Familial aggregation of FEF(25-75) and FEF(25-75)/FVC in families with severe, early onset COPD.

Authorship 472113
type: Authorship
author rank in publication: 3
linked author: Carey, Vincent
linked information resource: Erosion of the telomeric single-strand overhang at replicative senescence.

Authorship 565388
type: Authorship
author rank in publication: 1
linked author: Carey, Vincent
linked information resource: Contribution of high plasma triglycerides and low high-density lipoprotein cholesterol to residual risk of coronary heart disease after establishment of low-density lipoprotein cholesterol control.

Genetic control of gene expression at novel and established chronic obstructive pulmonary disease loci.
PubMed Identifier: 25315895
author list: Castaldi PJ, Cho MH, Zhou X, Qiu W, Mcgeachie M, Celli B, Bakke P, Gulsvik A, Lomas DA, Crapo JD, Beaty TH, Rennard S, Harshfield B, Lange C, Singh D, Tal-Singer R, Riley JH, Quackenbush J, Raby BA, Carey VJ, Silverman EK, Hersh CP
published in: Human molecular genetics
information resource reference: Genetic control of gene expression at novel and established chronic obstructive pulmonary disease loci. Hum Mol Genet. 2015 Feb 15; 24(4):1200-10.
journal title abbreviation: Hum Mol Genet
publication date: 2014-10-14T00:00:00
year: 2014
type: Academic Article
type: Article
type: Document
type: Information Resource

Authorship 583521
type: Authorship
linked author: Carey, Vincent
linked information resource: MLInterfaces: Interfaces to R machine learning procedures for high-throughput data structures

Authorship 340638
type: Authorship
author rank in publication: 5
linked author: Carey, Vincent
linked information resource: Immunogenicity and protective efficacy of the alpha C protein of group B streptococci are inversely related to the number of repeats.

Authorship 351832
type: Authorship
author rank in publication: 2
linked author: Carey, Vincent
linked information resource: An extensible application for assembling annotation for genomic data.

Authorship 405379
type: Authorship
author rank in publication: 4
linked author: Carey, Vincent
linked information resource: Mapping of numerous disease-associated expression polymorphisms in primary peripheral blood CD4+ lymphocytes.

Authorship 473443
type: Authorship
author rank in publication: 3
linked author: Carey, Vincent
linked information resource: Effects of protein, monounsaturated fat, and carbohydrate intake on blood pressure and serum lipids: results of the OmniHeart randomized trial.

Authorship 537408
type: Authorship
author rank in publication: 2
linked author: Carey, Vincent
linked information resource: Are performance measures based on automated medical records valid for physician/practice profiling of asthma care?

Authorship 797023
type: Authorship
author rank in publication: 4
linked author: Carey, Vincent
linked information resource: Peripheral CD5+ B cells in antineutrophil cytoplasmic antibody-associated vasculitis.

Authorship 803632
type: Authorship
author rank in publication: 3
linked author: Carey, Vincent
linked information resource: Low vs high glycemic index diet--reply.

Authorship 806638
type: Authorship
author rank in publication: 2
linked author: Carey, Vincent
linked information resource: Orchestrating high-throughput genomic analysis with Bioconductor.

Authorship 796051
type: Authorship
author rank in publication: 20
linked author: Carey, Vincent
linked information resource: Genetic control of gene expression at novel and established chronic obstructive pulmonary disease loci.

Orchestrating high-throughput genomic analysis with Bioconductor.
PubMed Identifier: 25633503
author list: Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oles AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M
published in: Nature methods
information resource reference: Orchestrating high-throughput genomic analysis with Bioconductor. Nat Methods. 2015 Feb; 12(2):115-21.
journal title abbreviation: Nat Methods
publication date: 2015-02-01T00:00:00
year: 2015
type: Academic Article
type: Article
type: Document
type: Information Resource

Low vs high glycemic index diet--reply.
PubMed Identifier: 25849187
author list: Sacks FM, Appel LJ, Carey VJ
published in: JAMA
information resource reference: Low vs high glycemic index diet--reply. JAMA. 2015 Apr 07; 313(13):1372-3.
journal title abbreviation: JAMA
publication date: 2015-04-07T00:00:00
year: 2015
type: Academic Article
type: Article
type: Document
type: Information Resource

Authorship 599525
type: Authorship
linked author: Carey, Vincent
linked information resource: Untitled Publication

Authorship 263198
type: Authorship
author rank in publication: 2
linked author: Carey, Vincent
linked information resource: Bioconductor: open software development for computational biology and bioinformatics.

Authorship 321482
type: Authorship
author rank in publication: 3
linked author: Carey, Vincent
linked information resource: Power enhancement via multivariate outlier testing with gene expression arrays.

Authorship 46598
type: Authorship
author rank in publication: 3
linked author: Carey, Vincent
linked information resource: Comparison of weight-loss diets with different compositions of fat, protein, and carbohydrates.

Authorship 518855
type: Authorship
author rank in publication: 4
linked author: Carey, Vincent
linked information resource: Host glycosaminoglycan confers susceptibility to bacterial infection in Drosophila melanogaster.

Authorship 492201
type: Authorship
author rank in publication: 3
linked author: Carey, Vincent
linked information resource: A graphical model approach for inferring large-scale networks integrating gene expression and genetic polymorphism.

Authorship 536871
type: Authorship
author rank in publication: 3
linked author: Carey, Vincent
linked information resource: https://connects.catalyst.harvard.edu/Profiles/profile/788878

Authorship 582109
type: Authorship
linked author: Carey, Vincent
linked information resource: Unbiased estimating equations from working correlation models for irregularly timed repeated measures

Authorship 314542
type: Authorship
author rank in publication: 1
linked author: Carey, Vincent
linked information resource: Analysis of longitudinally observed irregularly timed multivariate outcomes: regression with focus on cross-component correlation.

Authorship 823205
type: Authorship
author rank in publication: 3
linked author: Carey, Vincent
linked information resource: Smoking-Associated Site-Specific Differential Methylation in Buccal Mucosa in the COPDGene Study.

Authorship 591746
type: Authorship
linked author: Carey, Vincent
linked information resource: Machine learning concepts and tools for statistical genomics

Authorship 627702
type: Authorship
linked author: Carey, Vincent
linked information resource: Prognostic Value of 3-Color Flow Cytometry in Advanced Pediatric HIV Disease

Expression Quantitative Trait Loci Information Improves Predictive Modeling of Disease Relevance of Non-Coding Genetic Variation.
PubMed Identifier: 26474488
author list: Croteau-Chonka DC, Rogers AJ, Raj T, McGeachie MJ, Qiu W, Ziniti JP, Stubbs BJ, Liang L, Martinez FD, Strunk RC, Lemanske RF, Liu AH, Stranger BE, Carey VJ, Raby BA
published in: PloS one
information resource reference: Expression Quantitative Trait Loci Information Improves Predictive Modeling of Disease Relevance of Non-Coding Genetic Variation. PLoS One. 2015; 10(10):e0140758.
journal title abbreviation: PLoS One
publication date: 2015-10-16T00:00:00
year: 2015
type: Academic Article
type: Article
type: Document
type: Information Resource

Authorship 843474
type: Authorship
author rank in publication: 14
linked author: Carey, Vincent
linked information resource: Expression Quantitative Trait Loci Information Improves Predictive Modeling of Disease Relevance of Non-Coding Genetic Variation.

Authorship 446991
type: Authorship
author rank in publication: 4
linked author: Carey, Vincent
linked information resource: Protective efficacy of antibodies to the Staphylococcus aureus type 5 capsular polysaccharide in a modified model of endocarditis in rats.

Authorship 42767
type: Authorship
author rank in publication: 2
linked author: Carey, Vincent
linked information resource: A parametric family of correlation structures for the analysis of longitudinal data.

Authorship 588654
type: Authorship
linked author: Carey, Vincent
linked information resource: Ontology concepts and tools for statistical genomics

Authorship 866107
type: Authorship
author rank in publication: 2
linked author: Carey, Vincent
linked information resource: Effect of Prenatal Supplementation With Vitamin D on Asthma or Recurrent Wheezing in Offspring by Age 3 Years: The VDAART Randomized Clinical Trial.

Effect of Prenatal Supplementation With Vitamin D on Asthma or Recurrent Wheezing in Offspring by Age 3 Years: The VDAART Randomized Clinical Trial.
PubMed Identifier: 26813209
author list: Litonjua AA, Carey VJ, Laranjo N, Harshfield BJ, McElrath TF, O'Connor GT, Sandel M, Iverson RE, Lee-Paritz A, Strunk RC, Bacharier LB, Macones GA, Zeiger RS, Schatz M, Hollis BW, Hornsby E, Hawrylowicz C, Wu AC, Weiss ST
published in: JAMA
information resource reference: Effect of Prenatal Supplementation With Vitamin D on Asthma or Recurrent Wheezing in Offspring by Age 3 Years: The VDAART Randomized Clinical Trial. JAMA. 2016 Jan 26; 315(4):362-70.
journal title abbreviation: JAMA
publication date: 2016-01-26T00:00:00
year: 2016
type: Academic Article
type: Article
type: Document
type: Information Resource

Authorship 73550
type: Authorship
author rank in publication: 3
linked author: Carey, Vincent
linked information resource: Parental stress as a predictor of wheezing in infancy: a prospective birth-cohort study.

Authorship 873165
type: Authorship
author rank in publication: 2
linked author: Carey, Vincent
linked information resource: The Bioconductor channel in F1000Research.

The Bioconductor channel in F1000Research.
PubMed Identifier: 26998224
author list: Huber W, Carey V, Davis S, Hansen KD, Morgan M
published in: F1000Research
information resource reference: The Bioconductor channel in F1000Research. F1000Res. 2015; 4:217.
journal title abbreviation: F1000Res
publication date: 2015-07-10T00:00:00
year: 2015
type: Academic Article
type: Article
type: Document
type: Information Resource

Authorship 875049
type: Authorship
author rank in publication: 3
linked author: Carey, Vincent
linked information resource: https://connects.catalyst.harvard.edu/Profiles/profile/64366906

https://connects.catalyst.harvard.edu/Profiles/profile/64366906
PubMed Identifier: 26784651
author list: Gold DR, Litonjua AA, Carey VJ, Manson JE, Buring JE, Lee IM, Gordon D, Walter J, Friedenberg G, Hankinson JL, Copeland T, Luttmann-Gibson H
published in: Contemporary clinical trials
information resource reference: Lung VITAL: Rationale, design, and baseline characteristics of an ancillary study evaluating the effects of vitamin D and/or marine omega-3 fatty acid supplements on acute exacerbations of chronic respiratory disease, asthma control, pneumonia and lung function in adults. Contemp Clin Trials. 2016 Mar; 47:185-95.
journal title abbreviation: Contemp Clin Trials
publication date: 2016-01-16T00:00:00
year: 2016
type: Academic Article
type: Article
type: Document
type: Information Resource
label: Lung VITAL: Rationale, design, and baseline characteristics of an ancillary study evaluating the effects of vitamin D and/or marine omega-3 fatty acid supplements on acute exacerbations of chronic respiratory disease, asthma control, pneumonia and lung function in adults.

Authorship 880908
type: Authorship
author rank in publication: 10
linked author: Carey, Vincent
linked information resource: Pharmacokinetics of Once-Daily Darunavir/Ritonavir With and Without Etravirine in Human Immunodeficiency Virus-Infected Children, Adolescents, and Young Adults.

Pharmacokinetics of Once-Daily Darunavir/Ritonavir With and Without Etravirine in Human Immunodeficiency Virus-Infected Children, Adolescents, and Young Adults.
PubMed Identifier: 27199469
author list: Larson KB, Cressey TR, Yogev R, Wiznia A, Hazra R, Jean-Philippe P, Graham B, Gonzalez A, Britto P, Carey VJ, Acosta EP
published in: Journal of the Pediatric Infectious Diseases Society
information resource reference: Pharmacokinetics of Once-Daily Darunavir/Ritonavir With and Without Etravirine in Human Immunodeficiency Virus-Infected Children, Adolescents, and Young Adults. J Pediatric Infect Dis Soc. 2016 Jun; 5(2):131-7.
journal title abbreviation: J Pediatric Infect Dis Soc
publication date: 2015-01-28T00:00:00
year: 2015
type: Academic Article
type: Article
type: Document
type: Information Resource

Authorship 528566
type: Authorship
author rank in publication: 4
linked author: Carey, Vincent
linked information resource: Results of physical inspection before races and race-related characteristics and their association with musculoskeletal injuries in Thoroughbreds during races.

Authorship 884517
type: Authorship
author rank in publication: 5
linked author: Carey, Vincent
linked information resource: Age, Sexual Dimorphism, and Disease Associations in the Developing Human Fetal Lung Transcriptome.

Age, Sexual Dimorphism, and Disease Associations in the Developing Human Fetal Lung Transcriptome.
PubMed Identifier: 26584061
author list: Kho AT, Chhabra D, Sharma S, Qiu W, Carey VJ, Gaedigk R, Vyhlidal CA, Leeder JS, Tantisira KG, Weiss ST
published in: American journal of respiratory cell and molecular biology
information resource reference: Age, Sexual Dimorphism, and Disease Associations in the Developing Human Fetal Lung Transcriptome. Am J Respir Cell Mol Biol. 2016 06; 54(6):814-21.
journal title abbreviation: Am J Respir Cell Mol Biol
publication date: 2016-06-01T00:00:00
year: 2016
type: Academic Article
type: Article
type: Document
type: Information Resource

Authorship 55689
type: Authorship
author rank in publication: 2
linked author: Carey, Vincent
linked information resource: Abdominal adiposity and coronary heart disease in women.

Authorship 885551
type: Authorship
author rank in publication: 4
linked author: Carey, Vincent
linked information resource: Universality of human microbial dynamics.

Universality of human microbial dynamics.
PubMed Identifier: 27279224
author list: Bashan A, Gibson TE, Friedman J, Carey VJ, Weiss ST, Hohmann EL, Liu YY
published in: Nature
information resource reference: Universality of human microbial dynamics. Nature. 2016 06 09; 534(7606):259-62.
journal title abbreviation: Nature
publication date: 2016-06-09T00:00:00
year: 2016
type: Academic Article
type: Article
type: Document
type: Information Resource

Authorship 579806
type: Authorship
linked author: Carey, Vincent
linked information resource: Bioinformatics and Computational Biology Solutions with R and Bioconductor

Assistant Professor
sort order: 2
type: Faculty Rank

Associate Professor
sort order: 1
type: Faculty Rank

Full Professor
sort order: 0
type: Faculty Rank

Other Faculty
sort order: 5
type: Faculty Rank

Authorship 8143
type: Authorship
author rank in publication: 2
linked author: Carey, Vincent
linked information resource: Estimation of time since exposure for a prevalent cohort.

Authorship 893443
type: Authorship
author rank in publication: 11
linked author: Carey, Vincent
linked information resource: Public data and open source tools for multi-assay genomic investigation of disease.

Public data and open source tools for multi-assay genomic investigation of disease.
PubMed Identifier: 26463000
author list: Kannan L, Ramos M, Re A, El-Hachem N, Safikhani Z, Gendoo DM, Davis S, Gomez-Cabrero D, Castelo R, Hansen KD, Carey VJ, Morgan M, Culhane AC, Haibe-Kains B, Waldron L
published in: Briefings in bioinformatics
information resource reference: Public data and open source tools for multi-assay genomic investigation of disease. Brief Bioinform. 2016 07; 17(4):603-15.
journal title abbreviation: Brief Bioinform
publication date: 2015-10-12T00:00:00
year: 2015
type: Academic Article
type: Article
type: Document
type: Information Resource

Authorship 594328
type: Authorship
linked author: Carey, Vincent
linked information resource: Biobase: foundational structures and functions for Bioconductor

Authorship 606203
type: Authorship
linked author: Carey, Vincent
linked information resource: Bioconductor software for graphs

Gene Expression Profiling in Blood Provides Reproducible Molecular Insights into Asthma Control.
PubMed Identifier: 27494826
author list: Croteau-Chonka DC, Qiu W, Martinez FD, Strunk RC, Lemanske RF, Liu AH, Gilliland FD, Millstein J, Gauderman WJ, Ober C, Krishnan JA, White SR, Naureckas ET, Nicolae DL, Barnes KC, London SJ, Barraza-Villarreal A, Carey VJ, Weiss ST, Raby BA
published in: American journal of respiratory and critical care medicine
information resource reference: Gene Expression Profiling in Blood Provides Reproducible Molecular Insights into Asthma Control. Am J Respir Crit Care Med. 2017 01 15; 195(2):179-188.
journal title abbreviation: Am J Respir Crit Care Med
publication date: 2017-01-15T00:00:00
year: 2017
type: Academic Article
type: Article
type: Document
type: Information Resource

Authorship 540543
type: Authorship
author rank in publication: 6
linked author: Carey, Vincent
linked information resource: https://connects.catalyst.harvard.edu/Profiles/profile/1169613

Authorship 621764
type: Authorship
linked author: Carey, Vincent
linked information resource: GEE solvers: case studies in DSC design and implementation

Authorship 905962
type: Authorship
author rank in publication: 8
linked author: Carey, Vincent
linked information resource: Rilpivirine Pharmacokinetics Without and With Darunavir/Ritonavir Once Daily in Adolescents and Young Adults.

Rilpivirine Pharmacokinetics Without and With Darunavir/Ritonavir Once Daily in Adolescents and Young Adults.
PubMed Identifier: 27187753
author list: Foca M, Yogev R, Wiznia A, Hazra R, Jean-Philippe P, Graham B, Britto P, Carey VJ, King J, Acosta EP, Cressey TR
published in: The Pediatric infectious disease journal
information resource reference: Rilpivirine Pharmacokinetics Without and With Darunavir/Ritonavir Once Daily in Adolescents and Young Adults. Pediatr Infect Dis J. 2016 09; 35(9):e271-4.
journal title abbreviation: Pediatr Infect Dis J
publication date: 2016-09-01T00:00:00
year: 2016
type: Academic Article
type: Article
type: Document
type: Information Resource

DIET AND INSULIN SENSITIVITY: STATISTICAL METHODS
end date: 2016-12-31
principal investigator name: CAREY, VINCENT JAMES
start date: 2014-01-01
type: Grant
sponsor award id: R21DK098720

Principal Investigator
type: Researcher Role
researcher role of: Carey, Vincent
contributes to: DIET AND INSULIN SENSITIVITY: STATISTICAL METHODS

Authorship 911575
type: Authorship
author rank in publication: 2
linked author: Carey, Vincent
linked information resource: Clinical trial data access: Opening doors with TrialShare.

Clinical trial data access: Opening doors with TrialShare.
PubMed Identifier: 27474121
author list: Asare AL, Carey VJ, Rotrosen D, Nepom GT
published in: The Journal of allergy and clinical immunology
information resource reference: Clinical trial data access: Opening doors with TrialShare. J Allergy Clin Immunol. 2016 09; 138(3):724-726.
journal title abbreviation: J Allergy Clin Immunol
publication date: 2016-07-12T00:00:00
year: 2016
type: Academic Article
type: Article
type: Document
type: Information Resource

The Role of Vitamin D in the Transcriptional Program of Human Pregnancy.
PubMed Identifier: 27711190
author list: Al-Garawi A, Carey VJ, Chhabra D, Mirzakhani H, Morrow J, Lasky-Su J, Qiu W, Laranjo N, Litonjua AA, Weiss ST
published in: PloS one
information resource reference: The Role of Vitamin D in the Transcriptional Program of Human Pregnancy. PLoS One. 2016; 11(10):e0163832.
journal title abbreviation: PLoS One
publication date: 2016-10-06T00:00:00
year: 2016
type: Academic Article
type: Article
type: Document
type: Information Resource

Authorship 926539
type: Authorship
author rank in publication: 9
linked author: Carey, Vincent
linked information resource: Pharmacokinetics of Darunavir/Ritonavir With Etravirine Both Twice Daily in Human Immunodeficiency Virus-Infected Adolescents and Young Adults.

Authorship 922858
type: Authorship
author rank in publication: 9
linked author: Carey, Vincent
linked information resource: Pharmacokinetics of Unboosted Atazanavir in Treatment-experienced HIV-infected Children, Adolescents and Young Adults.

Authorship 927674
type: Authorship
author rank in publication: 2
linked author: Carey, Vincent
linked information resource: The Role of Vitamin D in the Transcriptional Program of Human Pregnancy.

Authorship 926828
type: Authorship
author rank in publication: 8
linked author: Carey, Vincent
linked information resource: Factors influencing the infant gut microbiome at age 3-6 months: Findings from the ethnically diverse Vitamin D Antenatal Asthma Reduction Trial (VDAART).

Factors influencing the infant gut microbiome at age 3-6 months: Findings from the ethnically diverse Vitamin D Antenatal Asthma Reduction Trial (VDAART).
PubMed Identifier: 27746239
author list: Sordillo JE, Zhou Y, McGeachie MJ, Ziniti J, Lange N, Laranjo N, Savage JR, Carey V, O'Connor G, Sandel M, Strunk R, Bacharier L, Zeiger R, Weiss ST, Weinstock G, Gold DR, Litonjua AA
published in: The Journal of allergy and clinical immunology
information resource reference: Factors influencing the infant gut microbiome at age 3-6 months: Findings from the ethnically diverse Vitamin D Antenatal Asthma Reduction Trial (VDAART). J Allergy Clin Immunol. 2017 02; 139(2):482-491.e14.
journal title abbreviation: J Allergy Clin Immunol
publication date: 2016-10-13T00:00:00
year: 2016
type: Academic Article
type: Article
type: Document
type: Information Resource

Pharmacokinetics of Unboosted Atazanavir in Treatment-experienced HIV-infected Children, Adolescents and Young Adults.
PubMed Identifier: 27583590
author list: Cressey TR, Hazra R, Wiznia A, Foca M, Jean-Philippe P, Graham B, King JR, Britto P, Carey VJ, Acosta EP, Yogev R
published in: The Pediatric infectious disease journal
information resource reference: Pharmacokinetics of Unboosted Atazanavir in Treatment-experienced HIV-infected Children, Adolescents and Young Adults. Pediatr Infect Dis J. 2016 12; 35(12):1333-1335.
journal title abbreviation: Pediatr Infect Dis J
publication date: 2016-12-01T00:00:00
year: 2016
type: Academic Article
type: Article
type: Document
type: Information Resource

Pharmacokinetics of Darunavir/Ritonavir With Etravirine Both Twice Daily in Human Immunodeficiency Virus-Infected Adolescents and Young Adults.
PubMed Identifier: 27103489
author list: Cressey TR, Yogev R, Wiznia A, Hazra R, Jean-Philippe P, Graham B, Gonzalez A, Britto P, Carey VJ, Fletcher CV, Acosta EP
published in: Journal of the Pediatric Infectious Diseases Society
information resource reference: Pharmacokinetics of Darunavir/Ritonavir With Etravirine Both Twice Daily in Human Immunodeficiency Virus-Infected Adolescents and Young Adults. J Pediatric Infect Dis Soc. 2017 Sep 01; 6(3):294-296.
journal title abbreviation: J Pediatric Infect Dis Soc
publication date: 2017-09-01T00:00:00
year: 2017
type: Academic Article
type: Article
type: Document
type: Information Resource

Authorship 448721
type: Authorship
author rank in publication: 3
linked author: Carey, Vincent
linked information resource: Passive respiratory mechanics in healthy infants. Effects of growth, gender, and smoking.

Early pregnancy vitamin D status and risk of preeclampsia.
PubMed Identifier: 27841759
author list: Mirzakhani H, Litonjua AA, McElrath TF, O'Connor G, Lee-Parritz A, Iverson R, Macones G, Strunk RC, Bacharier LB, Zeiger R, Hollis BW, Handy DE, Sharma A, Laranjo N, Carey V, Qiu W, Santolini M, Liu S, Chhabra D, Enquobahrie DA, Williams MA, Loscalzo J, Weiss ST
published in: The Journal of clinical investigation
information resource reference: Early pregnancy vitamin D status and risk of preeclampsia. J Clin Invest. 2016 12 01; 126(12):4702-4715.
journal title abbreviation: J Clin Invest
publication date: 2016-11-14T00:00:00
year: 2016
type: Academic Article
type: Article
type: Document
type: Information Resource

Authorship 529568
type: Authorship
author rank in publication: 3
linked author: Carey, Vincent
linked information resource: Diet type and changes in food cravings following weight loss: findings from the POUNDS LOST Trial.

Authorship 931248
type: Authorship
author rank in publication: 15
linked author: Carey, Vincent
linked information resource: Early pregnancy vitamin D status and risk of preeclampsia.

Authorship 605886
type: Authorship
linked author: Carey, Vincent
linked information resource: Bioconductor: software and development strategies for statistical genomics

Authorship 939813
type: Authorship
author rank in publication: 4
linked author: Carey, Vincent
linked information resource: Effect of type and amount of dietary carbohydrate on biomarkers of glucose homeostasis and C reactive protein in overweight or obese adults: results from the OmniCarb trial.

Effect of type and amount of dietary carbohydrate on biomarkers of glucose homeostasis and C reactive protein in overweight or obese adults: results from the OmniCarb trial.
PubMed Identifier: 27933186
author list: Juraschek SP, Miller ER, Selvin E, Carey VJ, Appel LJ, Christenson RH, Sacks FM
published in: BMJ open diabetes research & care
information resource reference: Effect of type and amount of dietary carbohydrate on biomarkers of glucose homeostasis and C reactive protein in overweight or obese adults: results from the OmniCarb trial. BMJ Open Diabetes Res Care. 2016; 4(1):e000276.
journal title abbreviation: BMJ Open Diabetes Res Care
publication date: 2016-11-14T00:00:00
year: 2016
type: Academic Article
type: Article
type: Document
type: Information Resource

Authorship 410125
type: Authorship
author rank in publication: 3
linked author: Carey, Vincent
linked information resource: Respiratory symptoms in urban Hispanic and non-Hispanic white women.

Authorship 473109
type: Authorship
author rank in publication: 10
linked author: Carey, Vincent
linked information resource: Adherence is a multi-dimensional construct in the POUNDS LOST trial.

Authorship 949396
type: Authorship
author rank in publication: 18
linked author: Carey, Vincent
linked information resource: Gene Expression Profiling in Blood Provides Reproducible Molecular Insights into Asthma Control.

Authorship 516503
type: Authorship
author rank in publication: 2
linked author: Carey, Vincent
linked information resource: Case-control study of late-term abortions associated with mare reproductive loss syndrome in central Kentucky.

Authorship 565795
type: Authorship
author rank in publication: 2
linked author: Carey, Vincent
linked information resource: Exposure to cockroach allergen in the home is associated with incident doctor-diagnosed asthma and recurrent wheezing.

Authorship 954224
type: Authorship
author rank in publication: 2
linked author: Carey, Vincent
linked information resource: The interaction between equipoise and logistics in clinical trials: A case study.

Authorship 954362
type: Authorship
author rank in publication: 7
linked author: Carey, Vincent
linked information resource: Expression Quantitative Trait loci (QTL) in tumor adjacent normal breast tissue and breast tumor tissue.

The interaction between equipoise and logistics in clinical trials: A case study.
PubMed Identifier: 28135804
author list: Warshaw MG, Carey VJ, McFarland EJ, Dawson L, Abrams E, Melvin A, Fairlie L, Spiegel H, Jay J, Agwu AL
published in: Clinical trials (London, England)
information resource reference: The interaction between equipoise and logistics in clinical trials: A case study. Clin Trials. 2017 Jun; 14(3):314-318.
journal title abbreviation: Clin Trials
publication date: 2017-01-31T00:00:00
year: 2017
type: Academic Article
type: Article
type: Document
type: Information Resource

Expression Quantitative Trait loci (QTL) in tumor adjacent normal breast tissue and breast tumor tissue.
PubMed Identifier: 28152060
author list: Quiroz-Zárate A, Harshfield BJ, Hu R, Knoblauch N, Beck AH, Hankinson SE, Carey V, Tamimi RM, Hunter DJ, Quackenbush J, Hazra A
published in: PloS one
information resource reference: Expression Quantitative Trait loci (QTL) in tumor adjacent normal breast tissue and breast tumor tissue. PLoS One. 2017; 12(2):e0170181.
journal title abbreviation: PLoS One
publication date: 2017-02-02T00:00:00
year: 2017
type: Academic Article
type: Article
type: Document
type: Information Resource

Authorship 617689
type: Authorship
linked author: Carey, Vincent
linked information resource: Graphs

Authorship 92839
type: Authorship
author rank in publication: 8
linked author: Carey, Vincent
linked information resource: https://connects.catalyst.harvard.edu/Profiles/profile/1049175

Passive respiratory mechanics in healthy infants. Effects of growth, gender, and smoking.
PubMed Identifier: 8810604
author list: Hanrahan JP, Brown RW, Carey VJ, Castile RG, Speizer FE, Tager IB
published in: American journal of respiratory and critical care medicine
information resource reference: Passive respiratory mechanics in healthy infants. Effects of growth, gender, and smoking. Am J Respir Crit Care Med. 1996 Sep; 154(3 Pt 1):670-80.
journal title abbreviation: Am J Respir Crit Care Med
publication date: 1996-09-01T00:00:00
year: 1996
type: Academic Article
type: Article
type: Document
type: Information Resource

Staphylococcus aureus serotype 5 capsular polysaccharide is antiphagocytic and enhances bacterial virulence in a murine bacteremia model.
PubMed Identifier: 9784520
author list: Thakker M, Park JS, Carey V, Lee JC
published in: Infection and immunity
information resource reference: Staphylococcus aureus serotype 5 capsular polysaccharide is antiphagocytic and enhances bacterial virulence in a murine bacteremia model. Infect Immun. 1998 Nov; 66(11):5183-9.
journal title abbreviation: Infect Immun
publication date: 1998-11-01T00:00:00
year: 1998
type: Academic Article
type: Article
type: Document
type: Information Resource

Results of physical inspection before races and race-related characteristics and their association with musculoskeletal injuries in Thoroughbreds during races.
PubMed Identifier: 10476712
author list: Cohen ND, Mundy GD, Peloso JG, Carey VJ, Amend NK
published in: Journal of the American Veterinary Medical Association
information resource reference: Results of physical inspection before races and race-related characteristics and their association with musculoskeletal injuries in Thoroughbreds during races. J Am Vet Med Assoc. 1999 Sep 01; 215(5):654-61.
journal title abbreviation: J Am Vet Med Assoc
publication date: 1999-09-01T00:00:00
year: 1999
type: Academic Article
type: Article
type: Document
type: Information Resource

Polysaccharide biosynthesis locus required for virulence of Bacteroides fragilis.
PubMed Identifier: 11401972
author list: Coyne MJ, Tzianabos AO, Mallory BC, Carey VJ, Kasper DL, Comstock LE
published in: Infection and immunity
information resource reference: Polysaccharide biosynthesis locus required for virulence of Bacteroides fragilis. Infect Immun. 2001 Jul; 69(7):4342-50.
journal title abbreviation: Infect Immun
publication date: 2001-07-01T00:00:00
year: 2001
type: Academic Article
type: Article
type: Document
type: Information Resource

Temporality of early-term abortions associated with mare reproductive loss syndrome in horses.
PubMed Identifier: 16273913
author list: Cohen ND, Carey VJ, Donahue JG, Seahorn JL, Brown SE, Riddle TW
published in: American journal of veterinary research
information resource reference: Temporality of early-term abortions associated with mare reproductive loss syndrome in horses. Am J Vet Res. 2005 Oct; 66(10):1792-7.
journal title abbreviation: Am J Vet Res
publication date: 2005-10-01T00:00:00
year: 2005
type: Academic Article
type: Article
type: Document
type: Information Resource

Rationale and design of the Optimal Macro-Nutrient Intake Heart Trial to Prevent Heart Disease (OMNI-Heart).
PubMed Identifier: 16422313
author list: Carey VJ, Bishop L, Charleston J, Conlin P, Erlinger T, Laranjo N, McCarron P, Miller E, Rosner B, Swain J, Sacks FM, Appel LJ
published in: Clinical trials (London, England)
information resource reference: Rationale and design of the Optimal Macro-Nutrient Intake Heart Trial to Prevent Heart Disease (OMNI-Heart). Clin Trials. 2005; 2(6):529-37.
journal title abbreviation: Clin Trials
publication date: 2005-01-01T00:00:00
year: 2005
type: Academic Article
type: Article
type: Document
type: Information Resource

Pediatric AIDS prognosis using somatic growth velocity.
PubMed Identifier: 9708417
author list: Carey VJ, Yong FH, Frenkel LM, McKinney RE
published in: AIDS (London, England)
information resource reference: Pediatric AIDS prognosis using somatic growth velocity. AIDS. 1998 Jul 30; 12(11):1361-9.
journal title abbreviation: AIDS
publication date: 1998-07-30T00:00:00
year: 1998
type: Academic Article
type: Article
type: Document
type: Information Resource

Growth velocity assessment in paediatric AIDS: smoothing, penalized quantile regression and the definition of growth failure.
PubMed Identifier: 14748042
author list: Carey VJ, Yong FH, Frenkel LM, McKinney RM
published in: Statistics in medicine
information resource reference: Growth velocity assessment in paediatric AIDS: smoothing, penalized quantile regression and the definition of growth failure. Stat Med. 2004 Feb 15; 23(3):509-26.
journal title abbreviation: Stat Med
publication date: 2004-02-15T00:00:00
year: 2004
type: Academic Article
type: Article
type: Document
type: Information Resource

Confidence interval for rate ratio in a 2 x 2 table with structural zero: an application in assessing false-negative rate ratio when combining two diagnostic tests.
PubMed Identifier: 15180684
author list: Tang ML, Tang NS, Carey VJ
published in: Biometrics
information resource reference: Confidence interval for rate ratio in a 2 x 2 table with structural zero: an application in assessing false-negative rate ratio when combining two diagnostic tests. Biometrics. 2004 Jun; 60(2):550-5; discussion 555.
journal title abbreviation: Biometrics
publication date: 2004-06-01T00:00:00
year: 2004
type: Academic Article
type: Article
type: Document
type: Information Resource

Abdominal adiposity and coronary heart disease in women.
PubMed Identifier: 9846779
author list: Rexrode KM, Carey VJ, Hennekens CH, Walters EE, Colditz GA, Stampfer MJ, Willett WC, Manson JE
published in: JAMA
information resource reference: Abdominal adiposity and coronary heart disease in women. JAMA. 1998 Dec 02; 280(21):1843-8.
journal title abbreviation: JAMA
publication date: 1998-12-02T00:00:00
year: 1998
type: Academic Article
type: Article
type: Document
type: Information Resource

Analysis of longitudinally observed irregularly timed multivariate outcomes: regression with focus on cross-component correlation.
PubMed Identifier: 11135345
author list: Carey VJ, Rosner BA
published in: Statistics in medicine
information resource reference: Analysis of longitudinally observed irregularly timed multivariate outcomes: regression with focus on cross-component correlation. Stat Med. 2001 Jan 15; 20(1):21-31.
journal title abbreviation: Stat Med
publication date: 2001-01-15T00:00:00
year: 2001
type: Academic Article
type: Article
type: Document
type: Information Resource

Using hypertext and the Internet for structure and management of observational studies.
PubMed Identifier: 9265692
author list: Carey VJ
published in: Statistics in medicine
information resource reference: Using hypertext and the Internet for structure and management of observational studies. Stat Med. 1997 Aug 15; 16(15):1667-82.
journal title abbreviation: Stat Med
publication date: 1997-08-15T00:00:00
year: 1997
type: Academic Article
type: Article
type: Document
type: Information Resource

Authorship 971140
type: Authorship
author rank in publication: 4
linked author: Carey, Vincent
linked information resource: Vitamin D supplementation in pregnancy, prenatal 25(OH)D levels, race, and subsequent asthma or recurrent wheeze in offspring: Secondary analyses from the Vitamin D Antenatal Asthma Reduction Trial.

Vitamin D supplementation in pregnancy, prenatal 25(OH)D levels, race, and subsequent asthma or recurrent wheeze in offspring: Secondary analyses from the Vitamin D Antenatal Asthma Reduction Trial.
PubMed Identifier: 28285844
author list: Wolsk HM, Harshfield BJ, Laranjo N, Carey VJ, O'Connor G, Sandel M, Strunk RC, Bacharier LB, Zeiger RS, Schatz M, Hollis BW, Weiss ST, Litonjua AA
published in: The Journal of allergy and clinical immunology
information resource reference: Vitamin D supplementation in pregnancy, prenatal 25(OH)D levels, race, and subsequent asthma or recurrent wheeze in offspring: Secondary analyses from the Vitamin D Antenatal Asthma Reduction Trial. J Allergy Clin Immunol. 2017 Nov; 140(5):1423-1429.e5.
journal title abbreviation: J Allergy Clin Immunol
publication date: 2017-03-09T00:00:00
year: 2017
type: Academic Article
type: Article
type: Document
type: Information Resource

The prevalence of pain in pediatric human immunodeficiency virus/acquired immunodeficiency syndrome as reported by participants in the Pediatric Late Outcomes Study (PACTG 219).
PubMed Identifier: 12042556
author list: Gaughan DM, Hughes MD, Seage GR, Selwyn PA, Carey VJ, Gortmaker SL, Oleske JM
published in: Pediatrics
information resource reference: The prevalence of pain in pediatric human immunodeficiency virus/acquired immunodeficiency syndrome as reported by participants in the Pediatric Late Outcomes Study (PACTG 219). Pediatrics. 2002 Jun; 109(6):1144-52.
journal title abbreviation: Pediatrics
publication date: 2002-06-01T00:00:00
year: 2002
type: Academic Article
type: Article
type: Document
type: Information Resource

Predictors of survival in severe, early onset COPD.
PubMed Identifier: 15539711
author list: Hersh CP, DeMeo DL, Al-Ansari E, Carey VJ, Reilly JJ, Ginns LC, Silverman EK
published in: Chest
information resource reference: Predictors of survival in severe, early onset COPD. Chest. 2004 Nov; 126(5):1443-51.
journal title abbreviation: Chest
publication date: 2004-11-01T00:00:00
year: 2004
type: Academic Article
type: Article
type: Document
type: Information Resource

Case-control study of early-term abortions (early fetal losses) associated with mare reproductive loss syndrome in central Kentucky.
PubMed Identifier: 12555985
author list: Cohen ND, Donahue JG, Carey VJ, Seahorn JL, Piercy D, Donahoe JK, Williams DM, Brown SE, Riddle TW
published in: Journal of the American Veterinary Medical Association
information resource reference: Case-control study of early-term abortions (early fetal losses) associated with mare reproductive loss syndrome in central Kentucky. J Am Vet Med Assoc. 2003 Jan 15; 222(2):210-7.
journal title abbreviation: J Am Vet Med Assoc
publication date: 2003-01-15T00:00:00
year: 2003
type: Academic Article
type: Article
type: Document
type: Information Resource

The unseen sample in cohort studies: estimation of its size and effect. Multicenter AIDS Cohort Study.
PubMed Identifier: 1805323
author list: Hoover DR, Muñoz A, Carey V, Odaka N, Taylor JM, Chmiel JS, Armstrong J, Vermund SH
published in: Statistics in medicine
information resource reference: The unseen sample in cohort studies: estimation of its size and effect. Multicenter AIDS Cohort Study. Stat Med. 1991 Dec; 10(12):1993-2003.
journal title abbreviation: Stat Med
publication date: 1991-12-01T00:00:00
year: 1991
type: Academic Article
type: Article
type: Document
type: Information Resource

Role of NADase in virulence in experimental invasive group A streptococcal infection.
PubMed Identifier: 16177331
author list: Bricker AL, Carey VJ, Wessels MR
published in: Infection and immunity
information resource reference: Role of NADase in virulence in experimental invasive group A streptococcal infection. Infect Immun. 2005 Oct; 73(10):6562-6.
journal title abbreviation: Infect Immun
publication date: 2005-10-01T00:00:00
year: 2005
type: Academic Article
type: Article
type: Document
type: Information Resource

181 Longwood Ave
type: Address
address line 1: Brigham and Women's Hospital
address line 2: Channing Division of Network Medicine
address line 3: 181 Longwood Ave
city: Boston
postal code: 02115
state or province: MA

https://connects.catalyst.harvard.edu/Profiles/profile/788878
PubMed Identifier: 15351753
author list: Lozano P, Finkelstein JA, Carey VJ, Wagner EH, Inui TS, Fuhlbrigge AL, Soumerai SB, Sullivan SD, Weiss ST, Weiss KB
published in: Archives of pediatrics & adolescent medicine
information resource reference: A multisite randomized trial of the effects of physician education and organizational change in chronic-asthma care: health outcomes of the Pediatric Asthma Care Patient Outcomes Research Team II Study. Arch Pediatr Adolesc Med. 2004 Sep; 158(9):875-83.
journal title abbreviation: Arch Pediatr Adolesc Med
publication date: 2004-09-01T00:00:00
year: 2004
type: Academic Article
type: Article
type: Document
type: Information Resource
label: A multisite randomized trial of the effects of physician education and organizational change in chronic-asthma care: health outcomes of the Pediatric Asthma Care Patient Outcomes Research Team II Study.

Combination lipid therapy in type 2 diabetes.
PubMed Identifier: 20842772
author list: Sacks FM, Carey VJ, Fruchart JC
published in: The New England journal of medicine
information resource reference: Combination lipid therapy in type 2 diabetes. N Engl J Med. 2010 08 12; 363(7):692-4; author reply 694-5.
journal title abbreviation: N Engl J Med
publication date: 2010-08-12T00:00:00
year: 2010
type: Academic Article
type: Article
type: Document
type: Information Resource

Biobase: foundational structures and functions for Bioconductor
author list: R. Gentleman, V. Carey, M. Morgan, S. Falcon
published in: Biobase: foundational structures and functions for Bioconductor
information resource reference: Biobase: foundational structures and functions for Bioconductor. 2002.
publication date: 2002-01-01T00:00:00
year: 2002
type: Academic Article
type: Article
type: Document
type: Information Resource

An approach to heteroskedastic modeling
author list: Carey VJ
published in: Statistical Modeling
information resource reference: An approach to heteroskedastic modeling. Statistical Modeling. 1999; 142-9.
publication date: 1999-01-01T00:00:00
year: 1999
type: Academic Article
type: Article
type: Document
type: Information Resource

Molecular analysis of the role of the group A streptococcal cysteine protease, hyaluronic acid capsule, and M protein in a murine model of human invasive soft-tissue infection.
PubMed Identifier: 9691092
author list: Ashbaugh CD, Warren HB, Carey VJ, Wessels MR
published in: The Journal of clinical investigation
information resource reference: Molecular analysis of the role of the group A streptococcal cysteine protease, hyaluronic acid capsule, and M protein in a murine model of human invasive soft-tissue infection. J Clin Invest. 1998 Aug 01; 102(3):550-60.
journal title abbreviation: J Clin Invest
publication date: 1998-08-01T00:00:00
year: 1998
type: Academic Article
type: Article
type: Document
type: Information Resource

An extensible application for assembling annotation for genomic data.
PubMed Identifier: 12499308
author list: Zhang J, Carey V, Gentleman R
published in: Bioinformatics (Oxford, England)
information resource reference: An extensible application for assembling annotation for genomic data. Bioinformatics. 2003 Jan; 19(1):155-6.
journal title abbreviation: Bioinformatics
publication date: 2003-01-01T00:00:00
year: 2003
type: Academic Article
type: Article
type: Document
type: Information Resource

Familial aggregation of FEF(25-75) and FEF(25-75)/FVC in families with severe, early onset COPD.
PubMed Identifier: 15115866
author list: DeMeo DL, Carey VJ, Chapman HA, Reilly JJ, Ginns LC, Speizer FE, Weiss ST, Silverman EK
published in: Thorax
information resource reference: Familial aggregation of FEF(25-75) and FEF(25-75)/FVC in families with severe, early onset COPD. Thorax. 2004 May; 59(5):396-400.
journal title abbreviation: Thorax
publication date: 2004-05-01T00:00:00
year: 2004
type: Academic Article
type: Article
type: Document
type: Information Resource

Bioconductor: an open source framework for bioinformatics and computational biology.
PubMed Identifier: 16939789
author list: Reimers M, Carey VJ
published in: Methods in enzymology
information resource reference: Bioconductor: an open source framework for bioinformatics and computational biology. Methods Enzymol. 2006; 411:119-34.
journal title abbreviation: Methods Enzymol
publication date: 2006-01-01T00:00:00
year: 2006
type: Academic Article
type: Article
type: Document
type: Information Resource

Fish consumption and risk of sudden cardiac death.
PubMed Identifier: 9424039
author list: Albert CM, Hennekens CH, O'Donnell CJ, Ajani UA, Carey VJ, Willett WC, Ruskin JN, Manson JE
published in: JAMA
information resource reference: Fish consumption and risk of sudden cardiac death. JAMA. 1998 Jan 07; 279(1):23-8.
journal title abbreviation: JAMA
publication date: 1998-01-07T00:00:00
year: 1998
type: Academic Article
type: Article
type: Document
type: Information Resource

Race, socioeconomic factors, and area of residence are associated with asthma prevalence.
PubMed Identifier: 10587412
author list: Litonjua AA, Carey VJ, Weiss ST, Gold DR
published in: Pediatric pulmonology
information resource reference: Race, socioeconomic factors, and area of residence are associated with asthma prevalence. Pediatr Pulmonol. 1999 Dec; 28(6):394-401.
journal title abbreviation: Pediatr Pulmonol
publication date: 1999-12-01T00:00:00
year: 1999
type: Academic Article
type: Article
type: Document
type: Information Resource

Case-control study of late-term abortions associated with mare reproductive loss syndrome in central Kentucky.
PubMed Identifier: 12555984
author list: Cohen ND, Carey VJ, Donahue JG, Seahorn JL, Donahoe JK, Williams DM, Harrison LR
published in: Journal of the American Veterinary Medical Association
information resource reference: Case-control study of late-term abortions associated with mare reproductive loss syndrome in central Kentucky. J Am Vet Med Assoc. 2003 Jan 15; 222(2):199-209.
journal title abbreviation: J Am Vet Med Assoc
publication date: 2003-01-15T00:00:00
year: 2003
type: Academic Article
type: Article
type: Document
type: Information Resource

Body fat distribution and risk of non-insulin-dependent diabetes mellitus in women. The Nurses' Health Study.
PubMed Identifier: 9098178
author list: Carey VJ, Walters EE, Colditz GA, Solomon CG, Willett WC, Rosner BA, Speizer FE, Manson JE
published in: American journal of epidemiology
information resource reference: Body fat distribution and risk of non-insulin-dependent diabetes mellitus in women. The Nurses' Health Study. Am J Epidemiol. 1997 Apr 01; 145(7):614-9.
journal title abbreviation: Am J Epidemiol
publication date: 1997-04-01T00:00:00
year: 1997
type: Academic Article
type: Article
type: Document
type: Information Resource

rtracklayer: an R package for interfacing with genome browsers.
PubMed Identifier: 19468054
author list: Lawrence M, Gentleman R, Carey V
published in: Bioinformatics (Oxford, England)
information resource reference: rtracklayer: an R package for interfacing with genome browsers. Bioinformatics. 2009 Jul 15; 25(14):1841-2.
journal title abbreviation: Bioinformatics
publication date: 2009-05-25T00:00:00
year: 2009
type: Academic Article
type: Article
type: Document
type: Information Resource

Distribution of four capsular serotypes of Enterococcus faecalis among clinical isolates from different geographical origins and infection sites.
PubMed Identifier: 16501898
author list: Hufnagel M, Carey VJ, Baldassarri L, Reinert RR, Huebner J
published in: Infection
information resource reference: Distribution of four capsular serotypes of Enterococcus faecalis among clinical isolates from different geographical origins and infection sites. Infection. 2006 Feb; 34(1):22-5.
journal title abbreviation: Infection
publication date: 2006-02-01T00:00:00
year: 2006
type: Academic Article
type: Article
type: Document
type: Information Resource

Steady-state pharmacokinetics of tenofovir-based regimens in HIV-infected pediatric patients.
PubMed Identifier: 21670182
author list: King JR, Yogev R, Jean-Philippe P, Graham B, Wiznia A, Britto P, Carey V, Hazra R, Acosta EP
published in: Antimicrobial agents and chemotherapy
information resource reference: Steady-state pharmacokinetics of tenofovir-based regimens in HIV-infected pediatric patients. Antimicrob Agents Chemother. 2011 Sep; 55(9):4290-4.
journal title abbreviation: Antimicrob Agents Chemother
publication date: 2011-06-13T00:00:00
year: 2011
type: Academic Article
type: Article
type: Document
type: Information Resource

Importing MAGE-ML format microarray data into BioConductor.
PubMed Identifier: 15256416
author list: Durinck S, Allemeersch J, Carey VJ, Moreau Y, De Moor B
published in: Bioinformatics (Oxford, England)
information resource reference: Importing MAGE-ML format microarray data into BioConductor. Bioinformatics. 2004 Dec 12; 20(18):3641-2.
journal title abbreviation: Bioinformatics
publication date: 2004-07-15T00:00:00
year: 2004
type: Academic Article
type: Article
type: Document
type: Information Resource

Authorship 985741
type: Authorship
author rank in publication: 8
linked author: Carey, Vincent
linked information resource: Vitamin D supplementation during pregnancy: Effect on the neonatal immune system in a randomized controlled trial.

Vitamin D supplementation during pregnancy: Effect on the neonatal immune system in a randomized controlled trial.
PubMed Identifier: 28552588
author list: Hornsby E, Pfeffer PE, Laranjo N, Cruikshank W, Tuzova M, Litonjua AA, Weiss ST, Carey VJ, O'Connor G, Hawrylowicz C
published in: The Journal of allergy and clinical immunology
information resource reference: Vitamin D supplementation during pregnancy: Effect on the neonatal immune system in a randomized controlled trial. J Allergy Clin Immunol. 2018 01; 141(1):269-278.e1.
journal title abbreviation: J Allergy Clin Immunol
publication date: 2017-05-26T00:00:00
year: 2017
type: Academic Article
type: Article
type: Document
type: Information Resource

Diarrhea as a cause of mortality in a mouse model of infectious colitis.
PubMed Identifier: 18680595
author list: Borenshtein D, Fry RC, Groff EB, Nambiar PR, Carey VJ, Fox JG, Schauer DB
published in: Genome biology
information resource reference: Diarrhea as a cause of mortality in a mouse model of infectious colitis. Genome Biol. 2008; 9(8):R122.
journal title abbreviation: Genome Biol
publication date: 2008-08-04T00:00:00
year: 2008
type: Academic Article
type: Article
type: Document
type: Information Resource

Authorship 987177
type: Authorship
author rank in publication: 13
linked author: Carey, Vincent
linked information resource: Integration of metabolomic and transcriptomic networks in pregnant women reveals biological pathways and predictive signatures associated with preeclampsia.

Integration of metabolomic and transcriptomic networks in pregnant women reveals biological pathways and predictive signatures associated with preeclampsia.
PubMed Identifier: 28596717
author list: Kelly RS, Croteau-Chonka DC, Dahlin A, Mirzakhani H, Wu AC, Wan ES, McGeachie MJ, Qiu W, Sordillo JE, Al-Garawi A, Gray KJ, McElrath TF, Carey VJ, Clish CB, Litonjua AA, Weiss ST, Lasky-Su JA
published in: Metabolomics : Official journal of the Metabolomic Society
information resource reference: Integration of metabolomic and transcriptomic networks in pregnant women reveals biological pathways and predictive signatures associated with preeclampsia. Metabolomics. 2017 Jan; 13(1).
journal title abbreviation: Metabolomics
publication date: 2016-12-12T00:00:00
year: 2016
type: Academic Article
type: Article
type: Document
type: Information Resource

Power enhancement via multivariate outlier testing with gene expression arrays.
PubMed Identifier: 19015138
author list: Asare AL, Gao Z, Carey VJ, Wang R, Seyfert-Margolis V
published in: Bioinformatics (Oxford, England)
information resource reference: Power enhancement via multivariate outlier testing with gene expression arrays. Bioinformatics. 2009 Jan 01; 25(1):48-53.
journal title abbreviation: Bioinformatics
publication date: 2008-11-16T00:00:00
year: 2008
type: Academic Article
type: Article
type: Document
type: Information Resource

Antimicrobial-specific cell-mediated immune reconstitution in children with advanced human immunodeficiency virus infection receiving highly active antiretroviral therapy.
PubMed Identifier: 15206061
author list: Weinberg A, Pahwa S, Oyomopito R, Carey VJ, Zimmer B, Mofenson L, Kovacs A, Burchett SK
published in: Clinical infectious diseases : an official publication of the Infectious Diseases Society of America
information resource reference: Antimicrobial-specific cell-mediated immune reconstitution in children with advanced human immunodeficiency virus infection receiving highly active antiretroviral therapy. Clin Infect Dis. 2004 Jul 01; 39(1):107-14.
journal title abbreviation: Clin Infect Dis
publication date: 2004-06-14T00:00:00
year: 2004
type: Academic Article
type: Article
type: Document
type: Information Resource

Authorship 989621
type: Authorship
author rank in publication: 12
linked author: Carey, Vincent
linked information resource: Decline in CD4 T lymphocytes with monotherapy bridging strategy for non-adherent adolescents living with HIV infection: Results of the IMPAACT P1094 randomized trial.

Decline in CD4 T lymphocytes with monotherapy bridging strategy for non-adherent adolescents living with HIV infection: Results of the IMPAACT P1094 randomized trial.
PubMed Identifier: 28604824
author list: Agwu AL, Warshaw MG, McFarland EJ, Siberry GK, Melvin AJ, Wiznia AA, Fairlie L, Boyd S, Harding P, Spiegel HML, Abrams EJ, Carey VJ
published in: PloS one
information resource reference: Decline in CD4 T lymphocytes with monotherapy bridging strategy for non-adherent adolescents living with HIV infection: Results of the IMPAACT P1094 randomized trial. PLoS One. 2017; 12(6):e0178075.
journal title abbreviation: PLoS One
publication date: 2017-06-12T00:00:00
year: 2017
type: Academic Article
type: Article
type: Document
type: Information Resource

Can comparison of MZ- and DZ-twin concordance rates be used invariably to estimate heritability?
PubMed Identifier: 17903111
author list: Tishler PV, Carey VJ
published in: Twin research and human genetics : the official journal of the International Society for Twin Studies
information resource reference: Can comparison of MZ- and DZ-twin concordance rates be used invariably to estimate heritability? Twin Res Hum Genet. 2007 Oct; 10(5):712-7.
journal title abbreviation: Twin Res Hum Genet
publication date: 2007-10-01T00:00:00
year: 2007
type: Academic Article
type: Article
type: Document
type: Information Resource

Descriptive epidemiology of late-term abortions associated with the mare reproductive loss syndrome in central Kentucky.
PubMed Identifier: 12735356
author list: Cohen ND, Carey VJ, Donahue JG, Seahorn JL, Harrison LR
published in: Journal of veterinary diagnostic investigation : official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc
information resource reference: Descriptive epidemiology of late-term abortions associated with the mare reproductive loss syndrome in central Kentucky. J Vet Diagn Invest. 2003 May; 15(3):295-7.
journal title abbreviation: J Vet Diagn Invest
publication date: 2003-05-01T00:00:00
year: 2003
type: Academic Article
type: Article
type: Document
type: Information Resource

Interpreting genetics of gene expression: integrative architecture in Bioconductor.
PubMed Identifier: 19209716
author list: Carey VJ, Gentleman R
published in: Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing
information resource reference: Interpreting genetics of gene expression: integrative architecture in Bioconductor. Pac Symp Biocomput. 2009; 380-90.
journal title abbreviation: Pac Symp Biocomput
publication date: 2009-01-01T00:00:00
year: 2009
type: Academic Article
type: Article
type: Document
type: Information Resource

Graphs in molecular biology.
PubMed Identifier: 17903289
author list: Huber W, Carey VJ, Long L, Falcon S, Gentleman R
published in: BMC bioinformatics
information resource reference: Graphs in molecular biology. BMC Bioinformatics. 2007 Sep 27; 8 Suppl 6:S8.
journal title abbreviation: BMC Bioinformatics
publication date: 2007-09-27T00:00:00
year: 2007
type: Academic Article
type: Article
type: Document
type: Information Resource

Steady-state pharmacokinetics of lopinavir/ritonavir in combination with efavirenz in human immunodeficiency virus-infected pediatric patients.
PubMed Identifier: 19106779
author list: King JR, Acosta EP, Yogev R, Wiznia A, Kraimer J, Graham B, Carey V, Britto P, Jean-Philippe P, Moye J, Watson D
published in: The Pediatric infectious disease journal
information resource reference: Steady-state pharmacokinetics of lopinavir/ritonavir in combination with efavirenz in human immunodeficiency virus-infected pediatric patients. Pediatr Infect Dis J. 2009 Feb; 28(2):159-61.
journal title abbreviation: Pediatr Infect Dis J
publication date: 2009-02-01T00:00:00
year: 2009
type: Academic Article
type: Article
type: Document
type: Information Resource

Comparison of weight-loss diets with different compositions of fat, protein, and carbohydrates.
PubMed Identifier: 19246357
author list: Sacks FM, Bray GA, Carey VJ, Smith SR, Ryan DH, Anton SD, McManus K, Champagne CM, Bishop LM, Laranjo N, Leboff MS, Rood JC, de Jonge L, Greenway FL, Loria CM, Obarzanek E, Williamson DA
published in: The New England journal of medicine
information resource reference: Comparison of weight-loss diets with different compositions of fat, protein, and carbohydrates. N Engl J Med. 2009 Feb 26; 360(9):859-73.
journal title abbreviation: N Engl J Med
publication date: 2009-02-26T00:00:00
year: 2009
type: Academic Article
type: Article
type: Document
type: Information Resource

Cigarette smoking behaviors and time since quitting are associated with differential DNA methylation across the human genome.
PubMed Identifier: 22492999
author list: Wan ES, Qiu W, Baccarelli A, Carey VJ, Bacherman H, Rennard SI, Agusti A, Anderson W, Lomas DA, Demeo DL
published in: Human molecular genetics
information resource reference: Cigarette smoking behaviors and time since quitting are associated with differential DNA methylation across the human genome. Hum Mol Genet. 2012 Jul 01; 21(13):3073-82.
journal title abbreviation: Hum Mol Genet
publication date: 2012-04-06T00:00:00
year: 2012
type: Academic Article
type: Article
type: Document
type: Information Resource

Diet type and changes in food cravings following weight loss: findings from the POUNDS LOST Trial.
PubMed Identifier: 23010779
author list: Anton SD, Gallagher J, Carey VJ, Laranjo N, Cheng J, Champagne CM, Ryan DH, McManus K, Loria CM, Bray GA, Sacks FM, Williamson DA
published in: Eating and weight disorders : EWD
information resource reference: Diet type and changes in food cravings following weight loss: findings from the POUNDS LOST Trial. Eat Weight Disord. 2012 Jun; 17(2):e101-8.
journal title abbreviation: Eat Weight Disord
publication date: 2012-06-01T00:00:00
year: 2012
type: Academic Article
type: Article
type: Document
type: Information Resource

Use of capsular polysaccharide-tetanus toxoid conjugate vaccine for type II group B Streptococcus in healthy women.
PubMed Identifier: 10979909
author list: Baker CJ, Paoletti LC, Rench MA, Guttormsen HK, Carey VJ, Hickman ME, Kasper DL
published in: The Journal of infectious diseases
information resource reference: Use of capsular polysaccharide-tetanus toxoid conjugate vaccine for type II group B Streptococcus in healthy women. J Infect Dis. 2000 Oct; 182(4):1129-38.
journal title abbreviation: J Infect Dis
publication date: 2000-09-08T00:00:00
year: 2000
type: Academic Article
type: Article
type: Document
type: Information Resource

Are performance measures based on automated medical records valid for physician/practice profiling of asthma care?
PubMed Identifier: 18520317
author list: Fuhlbrigge A, Carey VJ, Finkelstein JA, Lozano P, Inui TS, Weiss KB
published in: Medical care
information resource reference: Are performance measures based on automated medical records valid for physician/practice profiling of asthma care? Med Care. 2008 Jun; 46(6):620-6.
journal title abbreviation: Med Care
publication date: 2008-06-01T00:00:00
year: 2008
type: Academic Article
type: Article
type: Document
type: Information Resource

Predictors of decline in CD4 lymphocytes in a cohort of homosexual men infected with human immunodeficiency virus.
PubMed Identifier: 2905743
author list: Muñoz A, Carey V, Saah AJ, Phair JP, Kingsley LA, Fahey JL, Ginzburg HM, Polk BF
published in: Journal of acquired immune deficiency syndromes
information resource reference: Predictors of decline in CD4 lymphocytes in a cohort of homosexual men infected with human immunodeficiency virus. J Acquir Immune Defic Syndr (1988). 1988; 1(4):396-404.
journal title abbreviation: J Acquir Immune Defic Syndr (1988)
publication date: 1988-01-01T00:00:00
year: 1988
type: Academic Article
type: Article
type: Document
type: Information Resource

MLInterfaces: Interfaces to R machine learning procedures for high-throughput data structures
author list: Jess Mar, Robert Gentleman, Vince Carey
published in: MLInterfaces: Interfaces to R machine learning procedures for high-throughput data structures
information resource reference: MLInterfaces: Interfaces to R machine learning procedures for high-throughput data structures. 2004.
publication date: 2004-01-01T00:00:00
year: 2004
type: Academic Article
type: Article
type: Document
type: Information Resource

Bioconductor software for graphs
author list: Carey VJ, Gentleman RC, Huber W, Gentry J
published in: Gentleman RC, Carey VJ, Huber W, Irizarry RA, Dudoit S, editors. Bioinformatics and Computational Biology Solutions Using R and Bioconductor
information resource reference: Bioconductor software for graphs. Gentleman RC, Carey VJ, Huber W, Irizarry RA, Dudoit S, editors. Bioinformatics and Computational Biology Solutions Using R and Bioconductor. 2005; 347-68.
publication date: 2005-01-01T00:00:00
year: 2005
type: Academic Article
type: Article
type: Document
type: Information Resource

Accelerating Cancer Genomics with Cloud-scale Bioconductor
end date: 2021-04-30
principal investigator name: CAREY, VINCENT JAMES
start date: 2017-05-01
type: Grant
sponsor award id: U01CA214846

Principal Investigator
type: Researcher Role
researcher role of: Carey, Vincent
contributes to: Accelerating Cancer Genomics with Cloud-scale Bioconductor

Validity of the HEDIS criteria to identify children with persistent asthma and sustained high utilization.
PubMed Identifier: 15898221
author list: Fuhlbrigge AL, Carey VJ, Finkelstein JA, Lozano P, Inui TS, Weiss ST, Weiss KB
published in: The American journal of managed care
information resource reference: Validity of the HEDIS criteria to identify children with persistent asthma and sustained high utilization. Am J Manag Care. 2005 May; 11(5):325-30.
journal title abbreviation: Am J Manag Care
publication date: 2005-05-01T00:00:00
year: 2005
type: Academic Article
type: Article
type: Document
type: Information Resource

Estimation of time since exposure for a prevalent cohort.
PubMed Identifier: 1351308
author list: Muñoz A, Carey V, Taylor JM, Chmiel JS, Kingsley L, Van Raden M, Hoover DR
published in: Statistics in medicine
information resource reference: Estimation of time since exposure for a prevalent cohort. Stat Med. 1992 May; 11(7):939-52.
journal title abbreviation: Stat Med
publication date: 1992-05-01T00:00:00
year: 1992
type: Academic Article
type: Article
type: Document
type: Information Resource

Predictors of repeated wheeze in the first year of life: the relative roles of cockroach, birth weight, acute lower respiratory illness, and maternal smoking.
PubMed Identifier: 10390405
author list: Gold DR, Burge HA, Carey V, Milton DK, Platts-Mills T, Weiss ST
published in: American journal of respiratory and critical care medicine
information resource reference: Predictors of repeated wheeze in the first year of life: the relative roles of cockroach, birth weight, acute lower respiratory illness, and maternal smoking. Am J Respir Crit Care Med. 1999 Jul; 160(1):227-36.
journal title abbreviation: Am J Respir Crit Care Med
publication date: 1999-07-01T00:00:00
year: 1999
type: Academic Article
type: Article
type: Document
type: Information Resource

Authorship 1010427
type: Authorship
author rank in publication: 6
linked author: Carey, Vincent
linked information resource: Alcohol consumption and breast tumor gene expression.

Alcohol consumption and breast tumor gene expression.
PubMed Identifier: 28899409
author list: Wang J, Heng YJ, Eliassen AH, Tamimi RM, Hazra A, Carey VJ, Ambrosone CB, de Andrade VP, Brufsky A, Couch FJ, King TA, Modugno F, Vachon CM, Hunter DJ, Beck AH, Hankinson SE
published in: Breast cancer research : BCR
information resource reference: Alcohol consumption and breast tumor gene expression. Breast Cancer Res. 2017 Sep 12; 19(1):108.
journal title abbreviation: Breast Cancer Res
publication date: 2017-09-12T00:00:00
year: 2017
type: Academic Article
type: Article
type: Document
type: Information Resource

Tandem repeat deletion in the alpha C protein of group B streptococcus is recA independent.
PubMed Identifier: 11447184
author list: Puopolo KM, Hollingshead SK, Carey VJ, Madoff LC
published in: Infection and immunity
information resource reference: Tandem repeat deletion in the alpha C protein of group B streptococcus is recA independent. Infect Immun. 2001 Aug; 69(8):5037-45.
journal title abbreviation: Infect Immun
publication date: 2001-08-01T00:00:00
year: 2001
type: Academic Article
type: Article
type: Document
type: Information Resource

Ubiquitin conjugate dynamics in the gut and liver of hibernating ground squirrels.
PubMed Identifier: 11919708
author list: van Breukelen F, Carey V
published in: Journal of comparative physiology. B, Biochemical, systemic, and environmental physiology
information resource reference: Ubiquitin conjugate dynamics in the gut and liver of hibernating ground squirrels. J Comp Physiol B. 2002 Apr; 172(3):269-73.
journal title abbreviation: J Comp Physiol B
publication date: 2002-02-20T00:00:00
year: 2002
type: Academic Article
type: Article
type: Document
type: Information Resource

The Association of Maternal Asthma and Early Pregnancy Vitamin D with Risk of Preeclampsia: An Observation From Vitamin D Antenatal Asthma Reduction Trial (VDAART).
PubMed Identifier: 28923490
author list: Mirzakhani H, Carey VJ, McElrath TF, Laranjo N, O'Connor G, Iverson RE, Lee-Parritz A, Strunk RC, Bacharier LB, Macones GA, Zeiger RS, Schatz M, Hollis BW, Litonjua AA, Weiss ST
published in: The journal of allergy and clinical immunology. In practice
information resource reference: The Association of Maternal Asthma and Early Pregnancy Vitamin D with Risk of Preeclampsia: An Observation From Vitamin D Antenatal Asthma Reduction Trial (VDAART). J Allergy Clin Immunol Pract. 2018 Mar - Apr; 6(2):600-608.e2.
journal title abbreviation: J Allergy Clin Immunol Pract
publication date: 2017-09-08T00:00:00
year: 2017
type: Academic Article
type: Article
type: Document
type: Information Resource

Authorship 1012883
type: Authorship
author rank in publication: 2
linked author: Carey, Vincent
linked information resource: The Association of Maternal Asthma and Early Pregnancy Vitamin D with Risk of Preeclampsia: An Observation From Vitamin D Antenatal Asthma Reduction Trial (VDAART).

Quantifying differential gene connectivity between disease states for objective identification of disease-relevant genes.
PubMed Identifier: 21627793
author list: Chu JH, Lazarus R, Carey VJ, Raby BA
published in: BMC systems biology
information resource reference: Quantifying differential gene connectivity between disease states for objective identification of disease-relevant genes. BMC Syst Biol. 2011 May 31; 5:89.
journal title abbreviation: BMC Syst Biol
publication date: 2011-05-31T00:00:00
year: 2011
type: Academic Article
type: Article
type: Document
type: Information Resource

Working covariance model selection for generalized estimating equations.
PubMed Identifier: 21748775
author list: Carey VJ, Wang YG
published in: Statistics in medicine
information resource reference: Working covariance model selection for generalized estimating equations. Stat Med. 2011 Nov 20; 30(26):3117-24.
journal title abbreviation: Stat Med
publication date: 2011-07-11T00:00:00
year: 2011
type: Academic Article
type: Article
type: Document
type: Information Resource

Immune response to type III group B streptococcal polysaccharide-tetanus toxoid conjugate vaccine.
PubMed Identifier: 8941648
author list: Kasper DL, Paoletti LC, Wessels MR, Guttormsen HK, Carey VJ, Jennings HJ, Baker CJ
published in: The Journal of clinical investigation
information resource reference: Immune response to type III group B streptococcal polysaccharide-tetanus toxoid conjugate vaccine. J Clin Invest. 1996 Nov 15; 98(10):2308-14.
journal title abbreviation: J Clin Invest
publication date: 1996-11-15T00:00:00
year: 1996
type: Academic Article
type: Article
type: Document
type: Information Resource

Protective efficacy of antibodies to the Staphylococcus aureus type 5 capsular polysaccharide in a modified model of endocarditis in rats.
PubMed Identifier: 9317020
author list: Lee JC, Park JS, Shepherd SE, Carey V, Fattom A
published in: Infection and immunity
information resource reference: Protective efficacy of antibodies to the Staphylococcus aureus type 5 capsular polysaccharide in a modified model of endocarditis in rats. Infect Immun. 1997 Oct; 65(10):4146-51.
journal title abbreviation: Infect Immun
publication date: 1997-10-01T00:00:00
year: 1997
type: Academic Article
type: Article
type: Document
type: Information Resource

Regression analysis in the presence of heterogeneous intraclass correlations.
PubMed Identifier: 3567298
author list: Muñoz A, Rosner B, Carey V
published in: Biometrics
information resource reference: Regression analysis in the presence of heterogeneous intraclass correlations. Biometrics. 1986 Sep; 42(3):653-8.
journal title abbreviation: Biometrics
publication date: 1986-09-01T00:00:00
year: 1986
type: Academic Article
type: Article
type: Document
type: Information Resource

Effect of molecular size on the ability of zwitterionic polysaccharides to stimulate cellular immunity.
PubMed Identifier: 10623815
author list: Kalka-Moll WM, Tzianabos AO, Wang Y, Carey VJ, Finberg RW, Onderdonk AB, Kasper DL
published in: Journal of immunology (Baltimore, Md. : 1950)
information resource reference: Effect of molecular size on the ability of zwitterionic polysaccharides to stimulate cellular immunity. J Immunol. 2000 Jan 15; 164(2):719-24.
journal title abbreviation: J Immunol
publication date: 2000-01-15T00:00:00
year: 2000
type: Academic Article
type: Article
type: Document
type: Information Resource

Time Course of Change in Blood Pressure From Sodium Reduction and the DASH Diet.
PubMed Identifier: 28993451
author list: Juraschek SP, Woodward M, Sacks FM, Carey VJ, Miller ER, Appel LJ
published in: Hypertension (Dallas, Tex. : 1979)
information resource reference: Time Course of Change in Blood Pressure From Sodium Reduction and the DASH Diet. Hypertension. 2017 11; 70(5):923-929.
journal title abbreviation: Hypertension
publication date: 2017-11-01T00:00:00
year: 2017
type: Academic Article
type: Article
type: Document
type: Information Resource

Gastric and duodenal safety of daily alendronate.
PubMed Identifier: 11966346
author list: Donahue JG, Chan KA, Andrade SE, Beck A, Boles M, Buist DS, Carey VJ, Chandler JM, Chase GA, Ettinger B, Fishman P, Goodman M, Guess HA, Gurwitz JH, LaCroix AZ, Levin TR, Platt R
published in: Archives of internal medicine
information resource reference: Gastric and duodenal safety of daily alendronate. Arch Intern Med. 2002 Apr 22; 162(8):936-42.
journal title abbreviation: Arch Intern Med
publication date: 2002-04-22T00:00:00
year: 2002
type: Academic Article
type: Article
type: Document
type: Information Resource

Network structures and algorithms in Bioconductor.
PubMed Identifier: 15297301
author list: Carey VJ, Gentry J, Whalen E, Gentleman R
published in: Bioinformatics (Oxford, England)
information resource reference: Network structures and algorithms in Bioconductor. Bioinformatics. 2005 Jan 01; 21(1):135-6.
journal title abbreviation: Bioinformatics
publication date: 2004-08-05T00:00:00
year: 2004
type: Academic Article
type: Article
type: Document
type: Information Resource

Authorship 1018854
type: Authorship
author rank in publication: 4
linked author: Carey, Vincent
linked information resource: Time Course of Change in Blood Pressure From Sodium Reduction and the DASH Diet.

Deregulated expression of fat and muscle genes in B-cell chronic lymphocytic leukemia with high lipoprotein lipase expression.
PubMed Identifier: 16617321
author list: Bilban M, Heintel D, Scharl T, Woelfel T, Auer MM, Porpaczy E, Kainz B, Kröber A, Carey VJ, Shehata M, Zielinski C, Pickl W, Stilgenbauer S, Gaiger A, Wagner O, Jäger U
published in: Leukemia
information resource reference: Deregulated expression of fat and muscle genes in B-cell chronic lymphocytic leukemia with high lipoprotein lipase expression. Leukemia. 2006 Jun; 20(6):1080-8.
journal title abbreviation: Leukemia
publication date: 2006-06-01T00:00:00
year: 2006
type: Academic Article
type: Article
type: Document
type: Information Resource

Effect of protein, unsaturated fat, and carbohydrate intakes on plasma apolipoprotein B and VLDL and LDL containing apolipoprotein C-III: results from the OmniHeart Trial.
PubMed Identifier: 18541549
author list: Furtado JD, Campos H, Appel LJ, Miller ER, Laranjo N, Carey VJ, Sacks FM
published in: The American journal of clinical nutrition
information resource reference: Effect of protein, unsaturated fat, and carbohydrate intakes on plasma apolipoprotein B and VLDL and LDL containing apolipoprotein C-III: results from the OmniHeart Trial. Am J Clin Nutr. 2008 Jun; 87(6):1623-30.
journal title abbreviation: Am J Clin Nutr
publication date: 2008-06-01T00:00:00
year: 2008
type: Academic Article
type: Article
type: Document
type: Information Resource

CT metrics of airway disease and emphysema in severe COPD.
PubMed Identifier: 19411295
author list: Kim WJ, Silverman EK, Hoffman E, Criner GJ, Mosenifar Z, Sciurba FC, Make BJ, Carey V, San José Estépar R, Diaz A, Reilly JJ, Martinez FJ, Washko GR
published in: Chest
information resource reference: CT metrics of airway disease and emphysema in severe COPD. Chest. 2009 Aug; 136(2):396-404.
journal title abbreviation: Chest
publication date: 2009-05-01T00:00:00
year: 2009
type: Academic Article
type: Article
type: Document
type: Information Resource

Authorship 1021970
type: Authorship
author rank in publication: 2
linked author: Carey, Vincent
linked information resource: Concomitant nevirapine impacts pharmacokinetic exposure to the antimalarial artemether-lumefantrine in African children.

Concomitant nevirapine impacts pharmacokinetic exposure to the antimalarial artemether-lumefantrine in African children.
PubMed Identifier: 29065172
author list: Huang L, Carey V, Lindsey JC, Marzan F, Gingrich D, Graham B, Barlow-Mosha L, Ssemambo PK, Kamthunzi P, Nachman S, Parikh S, Aweeka FT
published in: PloS one
information resource reference: Concomitant nevirapine impacts pharmacokinetic exposure to the antimalarial artemether-lumefantrine in African children. PLoS One. 2017; 12(10):e0186589.
journal title abbreviation: PLoS One
publication date: 2017-10-24T00:00:00
year: 2017
type: Academic Article
type: Article
type: Document
type: Information Resource

Variable DNA methylation is associated with chronic obstructive pulmonary disease and lung function.
PubMed Identifier: 22161163
author list: Qiu W, Baccarelli A, Carey VJ, Boutaoui N, Bacherman H, Klanderman B, Rennard S, Agusti A, Anderson W, Lomas DA, DeMeo DL
published in: American journal of respiratory and critical care medicine
information resource reference: Variable DNA methylation is associated with chronic obstructive pulmonary disease and lung function. Am J Respir Crit Care Med. 2012 Feb 15; 185(4):373-81.
journal title abbreviation: Am J Respir Crit Care Med
publication date: 2011-12-08T00:00:00
year: 2011
type: Academic Article
type: Article
type: Document
type: Information Resource

Authorship 1022911
type: Authorship
author rank in publication: 19
linked author: Carey, Vincent
linked information resource: Software for the Integration of Multiomics Experiments in Bioconductor.

Software for the Integration of Multiomics Experiments in Bioconductor.
PubMed Identifier: 29092936
author list: Ramos M, Schiffer L, Re A, Azhar R, Basunia A, Rodriguez C, Chan T, Chapman P, Davis SR, Gomez-Cabrero D, Culhane AC, Haibe-Kains B, Hansen KD, Kodali H, Louis MS, Mer AS, Riester M, Morgan M, Carey V, Waldron L
published in: Cancer research
information resource reference: Software for the Integration of Multiomics Experiments in Bioconductor. Cancer Res. 2017 11 01; 77(21):e39-e42.
journal title abbreviation: Cancer Res
publication date: 2017-11-01T00:00:00
year: 2017
type: Academic Article
type: Article
type: Document
type: Information Resource

Visualization and annotation of genomic experiments
author list: Gentleman RC, Carey VJ
published in: Dunn MJ, Jorde LB, Little PFR, Subramaniam S, Editors. Encyclopedia of Genetics, Genomics, Proteomics and Bioinformatics
information resource reference: Visualization and annotation of genomic experiments. Dunn MJ, Jorde LB, Little PFR, Subramaniam S, Editors. Encyclopedia of Genetics, Genomics, Proteomics and Bioinformatics. 2005.
publication date: 2005-11-01T00:00:00
year: 2005
type: Academic Article
type: Article
type: Document
type: Information Resource

Modelling multivariate binary data with alternating logistic regressions
author list: Carey V, Zeger S, Diggle P
published in: Biometrika
information resource reference: Modelling multivariate binary data with alternating logistic regressions. Biometrika. 1993; 80(3):517-526.
publication date: 1993-01-01T00:00:00
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A prospective study of pregravid determinants of gestational diabetes mellitus.
PubMed Identifier: 9315766
author list: Solomon CG, Willett WC, Carey VJ, Rich-Edwards J, Hunter DJ, Colditz GA, Stampfer MJ, Speizer FE, Spiegelman D, Manson JE
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Bronchodilator responsiveness and serum total IgE levels in families of probands with severe early-onset COPD.
PubMed Identifier: 10596682
author list: Celedon JC, Speizer FE, Drazen JM, Weiss ST, Campbell EJ, Carey VJ, Reilly JJ, Ginns L, Silverman EK
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Estimating the 1978-1990 and future spread of human immunodeficiency virus type 1 in subgroups of homosexual men.
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author list: Hoover DR, Muñoz A, Carey V, Chmiel JS, Taylor JM, Margolick JB, Kingsley L, Vermund SH
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Effects of 4 weight-loss diets differing in fat, protein, and carbohydrate on fat mass, lean mass, visceral adipose tissue, and hepatic fat: results from the POUNDS LOST trial.
PubMed Identifier: 22258266
author list: de Souza RJ, Bray GA, Carey VJ, Hall KD, LeBoff MS, Loria CM, Laranjo NM, Sacks FM, Smith SR
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Graphs
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Effect of cigarette smoking on the pulmonary function of children and adolescents.
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An embryonic stem cell-like gene expression signature in poorly differentiated aggressive human tumors.
PubMed Identifier: 18443585
author list: Ben-Porath I, Thomson MW, Carey VJ, Ge R, Bell GW, Regev A, Weinberg RA
published in: Nature genetics
information resource reference: An embryonic stem cell-like gene expression signature in poorly differentiated aggressive human tumors. Nat Genet. 2008 May; 40(5):499-507.
journal title abbreviation: Nat Genet
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Early behavioral adherence predicts short and long-term weight loss in the POUNDS LOST study.
PubMed Identifier: 20195742
author list: Williamson DA, Anton SD, Han H, Champagne CM, Allen R, Leblanc E, Ryan DH, Rood J, McManus K, Laranjo N, Carey VJ, Loria CM, Bray GA, Sacks FM
published in: Journal of behavioral medicine
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journal title abbreviation: J Behav Med
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Polymorphic variation in surfactant protein B is associated with COPD exacerbations.
PubMed Identifier: 18550614
author list: Foreman MG, DeMeo DL, Hersh CP, Carey VJ, Fan VS, Reilly JJ, Shapiro SD, Silverman EK
published in: The European respiratory journal
information resource reference: Polymorphic variation in surfactant protein B is associated with COPD exacerbations. Eur Respir J. 2008 Oct; 32(4):938-44.
journal title abbreviation: Eur Respir J
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Host glycosaminoglycan confers susceptibility to bacterial infection in Drosophila melanogaster.
PubMed Identifier: 19047407
author list: Baron MJ, Wong SL, Nybakken K, Carey VJ, Madoff LC
published in: Infection and immunity
information resource reference: Host glycosaminoglycan confers susceptibility to bacterial infection in Drosophila melanogaster. Infect Immun. 2009 Feb; 77(2):860-6.
journal title abbreviation: Infect Immun
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Mapping of numerous disease-associated expression polymorphisms in primary peripheral blood CD4+ lymphocytes.
PubMed Identifier: 20833654
author list: Murphy A, Chu JH, Xu M, Carey VJ, Lazarus R, Liu A, Szefler SJ, Strunk R, Demuth K, Castro M, Hansel NN, Diette GB, Vonakis BM, Adkinson NF, Klanderman BJ, Senter-Sylvia J, Ziniti J, Lange C, Pastinen T, Raby BA
published in: Human molecular genetics
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The impact of self-identified race on epidemiologic studies of gene expression.
PubMed Identifier: 21254216
author list: Sharma S, Murphy A, Howrylak J, Himes B, Cho MH, Chu JH, Hunninghake GM, Fuhlbrigge A, Klanderman B, Ziniti J, Senter-Sylvia J, Liu A, Szefler SJ, Strunk R, Castro M, Hansel NN, Diette GB, Vonakis BM, Adkinson NF, Carey VJ, Raby BA
published in: Genetic epidemiology
information resource reference: The impact of self-identified race on epidemiologic studies of gene expression. Genet Epidemiol. 2011 Feb; 35(2):93-101.
journal title abbreviation: Genet Epidemiol
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Meta-data resources and tools in Bioconductor
author list: Gentleman RC, Carey VJ, Zhang J
published in: Gentleman RC, Carey VJ, Huber W, Irizarry RA, Dudoit S, editors. Bioinformatics and Computational Biology Solutions Using R and Bioconductor
information resource reference: Meta-data resources and tools in Bioconductor. Gentleman RC, Carey VJ, Huber W, Irizarry RA, Dudoit S, editors. Bioinformatics and Computational Biology Solutions Using R and Bioconductor. 2005; 111-34.
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Data structures and algorithms for analysis of genetics of gene expression with Bioconductor: GGtools 3.x.
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author list: Carey VJ, Davis AR, Lawrence MF, Gentleman R, Raby BA
published in: Bioinformatics (Oxford, England)
information resource reference: Data structures and algorithms for analysis of genetics of gene expression with Bioconductor: GGtools 3.x. Bioinformatics. 2009 Jun 01; 25(11):1447-8.
journal title abbreviation: Bioinformatics
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A graphical model approach for inferring large-scale networks integrating gene expression and genetic polymorphism.
PubMed Identifier: 19473523
author list: Chu JH, Weiss ST, Carey VJ, Raby BA
published in: BMC systems biology
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journal title abbreviation: BMC Syst Biol
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Machine learning and its applications to biology.
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author list: Tarca AL, Carey VJ, Chen XW, Romero R, Draghici S
published in: PLoS computational biology
information resource reference: Machine learning and its applications to biology. PLoS Comput Biol. 2007 Jun; 3(6):e116.
journal title abbreviation: PLoS Comput Biol
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Tracking of markers and onset of disease among HIV-1 seroconverters.
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author list: Galai N, Muñoz A, Chen K, Carey VJ, Chmiel J, Zhou SY
published in: Statistics in medicine
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Transcriptomic analysis of human lung development.
PubMed Identifier: 19815808
author list: Kho AT, Bhattacharya S, Tantisira KG, Carey VJ, Gaedigk R, Leeder JS, Kohane IS, Weiss ST, Mariani TJ
published in: American journal of respiratory and critical care medicine
information resource reference: Transcriptomic analysis of human lung development. Am J Respir Crit Care Med. 2010 Jan 01; 181(1):54-63.
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Adherence is a multi-dimensional construct in the POUNDS LOST trial.
PubMed Identifier: 19856202
author list: Williamson DA, Anton SD, Han H, Champagne CM, Allen R, LeBlanc E, Ryan DH, McManus K, Laranjo N, Carey VJ, Loria CM, Bray GA, Sacks FM
published in: Journal of behavioral medicine
information resource reference: Adherence is a multi-dimensional construct in the POUNDS LOST trial. J Behav Med. 2010 Feb; 33(1):35-46.
journal title abbreviation: J Behav Med
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Orientations of the Bacteroides fragilis capsular polysaccharide biosynthesis locus promoters during symbiosis and infection.
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published in: Journal of bacteriology
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Combining effects from rare and common genetic variants in an exome-wide association study of sequence data.
PubMed Identifier: 22373328
author list: Aschard H, Qiu W, Pasaniuc B, Zaitlen N, Cho MH, Carey V
published in: BMC proceedings
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journal title abbreviation: BMC Proc
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Authorship 102528
type: Authorship
author rank in publication: 5
linked author: Carey, Vincent
linked information resource: Diarrhea as a cause of mortality in a mouse model of infectious colitis.

Authorship 1043379
type: Authorship
author rank in publication: 18
linked author: Carey, Vincent
linked information resource: Role of local CpG DNA methylation in mediating the 17q21 asthma susceptibility gasdermin B (GSDMB)/ORMDL sphingolipid biosynthesis regulator 3 (ORMDL3) expression quantitative trait locus.

Role of local CpG DNA methylation in mediating the 17q21 asthma susceptibility gasdermin B (GSDMB)/ORMDL sphingolipid biosynthesis regulator 3 (ORMDL3) expression quantitative trait locus.
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author list: Kothari PH, Qiu W, Croteau-Chonka DC, Martinez FD, Liu AH, Lemanske RF, Ober C, Krishnan JA, Nicolae DL, Barnes KC, London SJ, Barraza-Villarreal A, White SR, Naureckas ET, Millstein J, Gauderman WJ, Gilliland FD, Carey VJ, Weiss ST, Raby BA
published in: The Journal of allergy and clinical immunology
information resource reference: Role of local CpG DNA methylation in mediating the 17q21 asthma susceptibility gasdermin B (GSDMB)/ORMDL sphingolipid biosynthesis regulator 3 (ORMDL3) expression quantitative trait locus. J Allergy Clin Immunol. 2018 06; 141(6):2282-2286.e6.
journal title abbreviation: J Allergy Clin Immunol
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year: 2018
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Bayesian inference on protective antibody levels using case-control data.
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author list: Carey VJ, Baker CJ, Platt R
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journal title abbreviation: Biometrics
publication date: 2001-03-01T00:00:00
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Parental stress as a predictor of wheezing in infancy: a prospective birth-cohort study.
PubMed Identifier: 11818321
author list: Wright RJ, Cohen S, Carey V, Weiss ST, Gold DR
published in: American journal of respiratory and critical care medicine
information resource reference: Parental stress as a predictor of wheezing in infancy: a prospective birth-cohort study. Am J Respir Crit Care Med. 2002 Feb 01; 165(3):358-65.
journal title abbreviation: Am J Respir Crit Care Med
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Hypersusceptibility of cystic fibrosis mice to chronic Pseudomonas aeruginosa oropharyngeal colonization and lung infection.
PubMed Identifier: 12578988
author list: Coleman FT, Mueschenborn S, Meluleni G, Ray C, Carey VJ, Vargas SO, Cannon CL, Ausubel FM, Pier GB
published in: Proceedings of the National Academy of Sciences of the United States of America
information resource reference: Hypersusceptibility of cystic fibrosis mice to chronic Pseudomonas aeruginosa oropharyngeal colonization and lung infection. Proc Natl Acad Sci U S A. 2003 Feb 18; 100(4):1949-54.
journal title abbreviation: Proc Natl Acad Sci U S A
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Immunogenicity and protective efficacy of the alpha C protein of group B streptococci are inversely related to the number of repeats.
PubMed Identifier: 9393818
author list: Gravekamp C, Kasper DL, Michel JL, Kling DE, Carey V, Madoff LC
published in: Infection and immunity
information resource reference: Immunogenicity and protective efficacy of the alpha C protein of group B streptococci are inversely related to the number of repeats. Infect Immun. 1997 Dec; 65(12):5216-21.
journal title abbreviation: Infect Immun
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Parental history and the risk for childhood asthma. Does mother confer more risk than father?
PubMed Identifier: 9655726
author list: Litonjua AA, Carey VJ, Burge HA, Weiss ST, Gold DR
published in: American journal of respiratory and critical care medicine
information resource reference: Parental history and the risk for childhood asthma. Does mother confer more risk than father? Am J Respir Crit Care Med. 1998 Jul; 158(1):176-81.
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A parametric family of correlation structures for the analysis of longitudinal data.
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author list: Muñoz A, Carey V, Schouten JP, Segal M, Rosner B
published in: Biometrics
information resource reference: A parametric family of correlation structures for the analysis of longitudinal data. Biometrics. 1992 Sep; 48(3):733-42.
journal title abbreviation: Biometrics
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Genome-wide association analysis in asthma subjects identifies SPATS2L as a novel bronchodilator response gene.
PubMed Identifier: 22792082
author list: Himes BE, Jiang X, Hu R, Wu AC, Lasky-Su JA, Klanderman BJ, Ziniti J, Senter-Sylvia J, Lima JJ, Irvin CG, Peters SP, Meyers DA, Bleecker ER, Kubo M, Tamari M, Nakamura Y, Szefler SJ, Lemanske RF, Zeiger RS, Strunk RC, Martinez FD, Hanrahan JP, Koppelman GH, Postma DS, Nieuwenhuis MA, Vonk JM, Panettieri RA, Markezich A, Israel E, Carey VJ, Tantisira KG, Litonjua AA, Lu Q, Weiss ST
published in: PLoS genetics
information resource reference: Genome-wide association analysis in asthma subjects identifies SPATS2L as a novel bronchodilator response gene. PLoS Genet. 2012 Jul; 8(7):e1002824.
journal title abbreviation: PLoS Genet
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T69D/N pol mutation, human immunodeficiency virus type 1 RNA levels, and syncytium-inducing phenotype are associated with CD4 cell depletion during didanosine therapy.
PubMed Identifier: 11865396
author list: Naugler WE, Yong FH, Carey VJ, Dragavon JA, Coombs RW, Frenkel LM
published in: The Journal of infectious diseases
information resource reference: T69D/N pol mutation, human immunodeficiency virus type 1 RNA levels, and syncytium-inducing phenotype are associated with CD4 cell depletion during didanosine therapy. J Infect Dis. 2002 Feb 15; 185(4):448-55.
journal title abbreviation: J Infect Dis
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The role of genotype in determining the effects of cigarette smoking on pulmonary function.
PubMed Identifier: 11921087
author list: Tishler PV, Carey VJ, Reed T, Fabsitz RR
published in: Genetic epidemiology
information resource reference: The role of genotype in determining the effects of cigarette smoking on pulmonary function. Genet Epidemiol. 2002 Mar; 22(3):272-82.
journal title abbreviation: Genet Epidemiol
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Bioconductor: software and development strategies for statistical genomics
author list: Gentleman RC, Carey VJ
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GGtools: software for genetics of gene expression
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published in: GGtools: software for genetics of gene expression
information resource reference: GGtools: software for genetics of gene expression. 2006.
publication date: 2006-01-01T00:00:00
year: 2006
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