GKG1GeorgGerberGeorg Kurt Gerber, M.D., Ph.D.42.33510370000000-71.106164900000002765Gerber, GeorgKurtMy objective is to create novel computational models and high-throughput experimental systems to understand the role of the microbiota in human diseases, and to apply these findings to develop new diagnostic tests and therapeutic interventions to improve patient care.
Lab website: http://gerber.bwh.harvard.edu617/278-0468Associate Professor of Pathologycatalyst:eCommonsLogineCommons Loginprns:coAuthorOfcoauthor ofprns:endDateend dateFaculty Rankprns:fullNamefull nameprns:hasAuthorListauthor listprns:hasFacultyRankhas faculty rankprns:hasNetworkhas networkprns:hasPublicationVenuepublished inprns:informationResourceReferenceinformation resource referenceprns:isPrimaryPositionis primary positionprns:latitudelatitudeprns:longitudelongitudeprns:mainImagephotoprns:maxWeightmaximum weightprns:medlineTAjournal title abbreviationprns:meshDescriptorUIMeSH DescriptorUIprns:meshSemanticGroupNameMeSH semantic group nameprns:minWeightminimum weightprns:numberOfAuthorsnumber of authorsprns:numberOfConnectionsnumber of connectionsprns:numberOfPublicationsnumber of publicationsprns:personIdPerson IDprns:personInPrimaryPositionperson in primary positionprns:physicalNeighborOfphysical neighborprns:positionInDepartmentposition in departmentprns:positionInDivisionposition in divisionprns:predicateNodepredicate nodeprns:principalInvestigatorNameprincipal investigator nameprns:publicationDatepublication dateprns:similarTosimilar toprns:sortOrdersort orderprns:startDatestart dateprns:uniquenessWeightuniqueness weightprns:yearyearAcademic ArticleArticleDocumentbibo:pmidPubMed IdentifierAddressvivo:address1address line 1vivo:address2address line 2vivo:address3address line 3vivo:addressCitycityvivo:addressPostalCodepostal codevivo:addressStatestate or provincevivo:authorInAuthorshipselected publicationsvivo:authorRankauthor rank in publicationAuthorshipDepartmentDivisionGrantvivo:hasResearchArearesearch areasvivo:hasResearcherRoleresearch activitiesvivo:hrJobTitleHR job titleInformation Resourcevivo:linkedAuthorlinked authorvivo:linkedInformationResourcelinked information resourcevivo:mailingAddressmailing addressvivo:middleNamemiddle name or initialvivo:overviewoverviewvivo:personInPositionpositionsvivo:phoneNumberphonePositionvivo:positionInOrganizationposition in organizationvivo:preferredTitlepreferred titleResearcher Rolevivo:researcherRoleOfresearcher role ofvivo:roleContributesTocontributes tovivo:sponsorAwardIdsponsor award idrdf:predicatepredicaterdf:typetyperdfs:labellabelConceptAgentfoaf:firstNamefirst namefoaf:lastNamelast nameOrganizationPersonAuthorship 10586831029664397Stein RR, Tanoue T, Szabady RL, Bhattarai SK, Olle B, Norman JM, Suda W, Oshima K, Hattori M, Gerber GK, Sander C, Honda K, Bucci VeLifeComputer-guided design of optimal microbial consortia for immune system modulation. Elife. 2018 04 17; 7.Elife2018-04-17T00:00:002018Computer-guided design of optimal microbial consortia for immune system modulation.16595631Schreiber J, Jenner RG, Murray HL, Gerber GK, Gifford DK, Young RAProceedings of the National Academy of Sciences of the United States of AmericaCoordinated binding of NF-kappaB family members in the response of human cells to lipopolysaccharide. Proc Natl Acad Sci U S A. 2006 Apr 11; 103(15):5899-904.Proc Natl Acad Sci U S A2006-04-04T00:00:002006Coordinated binding of NF-kappaB family members in the response of human cells to lipopolysaccharide.23123061Chen L, Chen Z, Baker K, Halvorsen EM, da Cunha AP, Flak MB, Gerber G, Huang YH, Hosomi S, Arthur JC, Dery KJ, Nagaishi T, Beauchemin N, Holmes KV, Ho JW, Shively JE, Jobin C, Onderdonk AB, Bry L, Weiner HL, Higgins DE, Blumberg RSImmunityThe short isoform of the CEACAM1 receptor in intestinal T cells regulates mucosal immunity and homeostasis via Tfh cell induction. Immunity. 2012 Nov 16; 37(5):930-46.Immunity2012-11-01T00:00:002012The short isoform of the CEACAM1 receptor in intestinal T cells regulates mucosal immunity and homeostasis via Tfh cell induction.20966006Guo Y, Papachristoudis G, Altshuler RC, Gerber GK, Jaakkola TS, Gifford DK, Mahony SBioinformatics (Oxford, England)Discovering homotypic binding events at high spatial resolution. Bioinformatics. 2010 Dec 15; 26(24):3028-34.Bioinformatics2010-10-21T00:00:002010Discovering homotypic binding events at high spatial resolution.Authorship 1089422530125499Kim S, Kerns SJ, Ziesack M, Bry L, Gerber GK, Way JC, Silver PAACS synthetic biologyQuorum Sensing Can Be Repurposed To Promote Information Transfer between Bacteria in the Mammalian Gut. ACS Synth Biol. 2018 09 21; 7(9):2270-2281.ACS Synth Biol2018-08-31T00:00:002018Quorum Sensing Can Be Repurposed To Promote Information Transfer between Bacteria in the Mammalian Gut.2023-08-30GERBER, GEORG KURT2018-09-20Bayesian Machine Learning Tools for Analyzing Microbiome DynamicsR01GM130777Principal InvestigatorD003015Disorders2225490.592006Clostridium InfectionsD056186Occupations2104280.750198MetagenomicsD041981Anatomy5148140.616332Gastrointestinal TractD054892Genes & Molecular SequencesLiving Beings1964170.756821MetagenomeD001433Phenomena40510.9616BacteriolysisBiostatisticsMedicinePathologyPediatricsSystems BiologyWyss InstituteGastroenterologyImmunologyChanning Division of Network MedicineBeth Israel Deaconess Medical CenterBrigham and Women's HospitalBoston Children's HospitalHarvard Medical SchoolHarvard T.H. Chan School of Public HealthHarvard UniversityMassachusetts General HospitalGLM1GeorgeMutterGeorge L. Mutter, M.D.42.33510370000000-71.1061649000000080078Mutter, GeorgeProfessor of PathologyRX1RamnikXavierRamnik Xavier, M.B.,B.Ch.42.36125700000000-71.0655270000000064506Xavier, RamnikKurt J. Isselbacher Professor of Medicine in the Field of GastroenterologyJR152JessicaAllegrettiJessica Ravikoff Allegretti, M.D.42.36241700000000-71.0689370000000078868Allegretti, JessicaAssociate Professor of MedicineESC2EdmundCibasEdmund Saulius Cibas, M.D.42.33510370000000-71.1061649000000060144Cibas, EdmundProfessor of PathologyCPK1CiaranKellyCiaran Patrick Kelly, M.B., M.D.42.34022770000000-71.105854000000005983Kelly, CiaranProfessor of MedicineANA8AshwinAnanthakrishnanAshwin N Ananthakrishnan, M.B.,B.S.42.36127360000000-71.0647979000000091281Ananthakrishnan, AshwinAssociate Professor of MedicineLB14LynnBryLynn Bry, M.D.,Ph.D.42.33710500000000-71.1023170000000059023Bry, LynnAssociate Professor of PathologyCH132CurtisHuttenhowerCurtis Huttenhower, Ph.D.42.33546850000000-71.1015102000000016016Huttenhower, CurtisProfessor of Computational Biology and BioinformaticsPAS1PamelaSilverPamela A. Silver, Ph.D.42.33594500000000-71.1029580000000033128Silver, PamelaElliott T. and Onie H. Adams Professor of Biochemistry and Systems BiologyVYJ3VickieJoVickie Young Jo, M.D.42.33510370000000-71.1061649000000090863Jo, VickieAssociate Professor of PathologyAuthorship 1161635831175044Hsu BB, Gibson TE, Yeliseyev V, Liu Q, Lyon L, Bry L, Silver PA, Gerber GKCell host & microbeDynamic Modulation of the Gut Microbiota and Metabolome by Bacteriophages in a Mouse Model. Cell Host Microbe. 2019 Jun 12; 25(6):803-814.e5.Cell Host Microbe2019-06-04T00:00:002019Dynamic Modulation of the Gut Microbiota and Metabolome by Bacteriophages in a Mouse Model.1141selected publications1.380210.00600263214research areas2.440.028364540coauthor of54.56935.8347560similar toSCL2SusanLesterSusan Carole Lester, M.D., Ph.D.42.33510370000000-71.1061649000000032360Lester, SusanAssociate Professor of Pathology, Part-timeKRL1KennethLeeKenneth R. Lee, M.D.42.33510370000000-71.1061649000000031268Lee, KennethAssociate Professor of Pathology, Part-timeTAC18TalalChatilaTalal Amine Chatila, M.D.105040Chatila, TalalDenise and David Bunning Professor of Pediatrics in the Field of Allergy and ImmunologyAuthorship 1165461331235962Abdel-Gadir A, Stephen-Victor E, Gerber GK, Noval Rivas M, Wang S, Harb H, Wang L, Li N, Crestani E, Spielman S, Secor W, Biehl H, DiBenedetto N, Dong X, Umetsu DT, Bry L, Rachid R, Chatila TANature medicineMicrobiota therapy acts via a regulatory T cell MyD88/ROR?t pathway to suppress food allergy. Nat Med. 2019 07; 25(7):1164-1174.Nat Med2019-06-24T00:00:002019Microbiota therapy acts via a regulatory T cell MyD88/ROR?t pathway to suppress food allergy.Authorship 11862733Authorship 11844811231409662Ziesack M, Gibson T, Oliver JKW, Shumaker AM, Hsu BB, Riglar DT, Giessen TW, DiBenedetto NV, Bry L, Way JC, Silver PA, Gerber GKmSystemsEngineered Interspecies Amino Acid Cross-Feeding Increases Population Evenness in a Synthetic Bacterial Consortium. mSystems. 2019 Aug 13; 4(4).mSystems2019-08-13T00:00:002019Engineered Interspecies Amino Acid Cross-Feeding Increases Population Evenness in a Synthetic Bacterial Consortium.31420602Abdel-Gadir A, Stephen-Victor E, Gerber GK, Noval Rivas M, Wang S, Harb H, Wang L, Li N, Crestani E, Spielman S, Secor W, Biehl H, DiBenedetto N, Dong X, Umetsu DT, Bry L, Rachid R, Chatila TANature medicineAuthor Correction: Microbiota therapy acts via a regulatory T cell MyD88/ROR?t pathway to suppress food allergy. Nat Med. 2019 Sep; 25(9):1458.Nat Med2019-09-01T00:00:002019Author Correction: Microbiota therapy acts via a regulatory T cell MyD88/ROR?t pathway to suppress food allergy.Authorship 1187392331477162Bogart E, Creswell R, Gerber GKGenome biologyMITRE: inferring features from microbiota time-series data linked to host status. Genome Biol. 2019 09 02; 20(1):186.Genome Biol2019-09-02T00:00:002019MITRE: inferring features from microbiota time-series data linked to host status.Authorship 1201550631667694Allegretti JR, Marcus J, Storm M, Sitko J, Kennedy K, Gerber GK, Bry LDigestive diseases and sciencesClinical Predictors of Recurrence After Primary Clostridioides difficile Infection: A Prospective Cohort Study. Dig Dis Sci. 2020 06; 65(6):1761-1766.Dig Dis Sci2019-10-30T00:00:002019Clinical Predictors of Recurrence After Primary Clostridioides difficile Infection: A Prospective Cohort Study.true1Kurt J. Isselbacher Professor of Medicine in the Field of GastroenterologyKurt J. Isselbacher Professor of Medicine in the Field of Gastroenterologytrue1Associate Professor of PathologyAssociate Professor of Pathologytrue1Professor of PathologyProfessor of Pathologytrue1Professor of MedicineProfessor of Medicinetrue1Professor of PathologyProfessor of Pathologytrue1Associate Professor of MedicineAssociate Professor of Medicinetrue1Associate Professor of Pathology, Part-timeAssociate Professor of Pathology, Part-timetrue1Elliott T. and Onie H. Adams Professor of Biochemistry and Systems BiologyElliott T. and Onie H. Adams Professor of Biochemistry and Systems Biologytrue1Associate Professor of PathologyAssociate Professor of Pathologytrue1Associate Professor of PathologyAssociate Professor of PathologyAuthorship 1840034Authorship 1261917732620143Creswell R, Tan J, Leff JW, Brooks B, Mahowald MA, Thieroff-Ekerdt R, Gerber GKGenome medicineHigh-resolution temporal profiling of the human gut microbiome reveals consistent and cascading alterations in response to dietary glycans. Genome Med. 2020 07 03; 12(1):59.Genome Med2020-07-03T00:00:002020High-resolution temporal profiling of the human gut microbiome reveals consistent and cascading alterations in response to dietary glycans.Authorship 1324207733499919Kashani A, Brejnrod AD, Jin C, Kern T, Madsen AN, Holm LA, Gerber GK, Holm JC, Hansen T, Holst B, Arumugam MAnimal microbiomeImpaired glucose metabolism and altered gut microbiome despite calorie restriction of ob/ob mice. Anim Microbiome. 2019 Sep 05; 1(1):11.Anim Microbiome2019-09-05T00:00:002019Impaired glucose metabolism and altered gut microbiome despite calorie restriction of ob/ob mice.Authorship 1542081Authorship 14032641534637781Girinathan BP, DiBenedetto N, Worley JN, Peltier J, Arrieta-Ortiz ML, Immanuel SRC, Lavin R, Delaney ML, Cummins CK, Hoffman M, Luo Y, Gonzalez-Escalona N, Allard M, Onderdonk AB, Gerber GK, Sonenshein AL, Baliga NS, Dupuy B, Bry LCell host & microbeIn vivo commensal control of Clostridioides difficile virulence. Cell Host Microbe. 2021 11 10; 29(11):1693-1708.e7.Cell Host Microbe2021-10-11T00:00:002021In vivo commensal control of Clostridioides difficile virulence.Authorship 1449832true1Assistant Professor of PathologyAssistant Professor of PathologyAuthorship 146150412Authorship 1461618735681218Dawkins JJ, Allegretti JR, Gibson TE, McClure E, Delaney M, Bry L, Gerber GKMicrobiomeGut metabolites predict Clostridioides difficile recurrence. Microbiome. 2022 06 09; 10(1):87.Microbiome2022-06-09T00:00:002022Gut metabolites predict Clostridioides difficile recurrence.Authorship 1486760336069455Maringanti VS, Bucci V, Gerber GKmSystemsMDITRE: Scalable and Interpretable Machine Learning for Predicting Host Status from Temporal Microbiome Dynamics. mSystems. 2022 Oct 26; 7(5):e0013222.mSystems2022-09-07T00:00:002022MDITRE: Scalable and Interpretable Machine Learning for Predicting Host Status from Temporal Microbiome Dynamics.true1Associate Professor of MedicineAssociate Professor of MedicineAuthorship 1523214936747646Kim Y, Worby CJ, Acharya S, van Dijk LR, Alfonsetti D, Gromko Z, Azimzadeh P, Dodson K, Gerber G, Hultgren S, Earl AM, Berger B, Gibson TEbioRxiv : the preprint server for biologyStrain Tracking with Uncertainty Quantification. bioRxiv. 2023 Jan 26.bioRxiv2023-01-26T00:00:002023Strain Tracking with Uncertainty Quantification.Authorship 15924541937693180Chen RJ, Ding T, Lu MY, Williamson DFK, Jaume G, Chen B, Zhang A, Shao D, Song AH, Shaban M, Williams M, Vaidya A, Sahai S, Oldenburg L, Weishaupt LL, Wang JJ, Williams W, Le LP, Gerber G, Mahmood FArXivA General-Purpose Self-Supervised Model for Computational Pathology. ArXiv. 2023 Aug 29.ArXiv2023-08-29T00:00:002023A General-Purpose Self-Supervised Model for Computational Pathology.true1Associate Professor of Pathology, Part-timeAssociate Professor of Pathology, Part-time2028-06-30GERBER, GEORG KURT2023-09-01Probabilistic deep learning models and integrated biological experiments for analyzing dynamic and heterogeneous microbiomesR35GM149270Principal Investigatortrue1Denise and David Bunning Professor of Pediatrics in the Field of Allergy and ImmunologyDenise and David Bunning Professor of Pediatrics in the Field of Allergy and Immunologytrue1Scholar, VisitingScholar, Visitingtrue1Professor of Computational Biology and BioinformaticsProfessor of Computational Biology and BioinformaticsTEG8TravisGibsonTravis Eli Gibson, Ph.D.125001Gibson, TravisAssistant Professor of PathologyAuthorship 742105225014551Belzer C, Gerber GK, Roeselers G, Delaney M, DuBois A, Liu Q, Belavusava V, Yeliseyev V, Houseman A, Onderdonk A, Cavanaugh C, Bry LPloS oneDynamics of the microbiota in response to host infection. PLoS One. 2014; 9(7):e95534.PLoS One2014-07-11T00:00:002014Dynamics of the microbiota in response to host infection.Authorship 755101225171694Louis DN, Gerber GK, Baron JM, Bry L, Dighe AS, Getz G, Higgins JM, Kuo FC, Lane WJ, Michaelson JS, Le LP, Mermel CH, Gilbertson JR, Golden JAArchives of pathology & laboratory medicineComputational pathology: an emerging definition. Arch Pathol Lab Med. 2014 Sep; 138(9):1133-8.Arch Pathol Lab Med2014-09-01T00:00:002014Computational pathology: an emerging definition.Authorship 7769312Authorship 776932125532804Carmody RN, Gerber GK, Luevano JM, Gatti DM, Somes L, Svenson KL, Turnbaugh PJCell host & microbeDiet dominates host genotype in shaping the murine gut microbiota. Cell Host Microbe. 2015 Jan 14; 17(1):72-84.Cell Host Microbe2014-12-18T00:00:002014Diet dominates host genotype in shaping the murine gut microbiota.24583074Gerber GKFEBS lettersThe dynamic microbiome. FEBS Lett. 2014 Nov 17; 588(22):4131-9.FEBS Lett2014-02-28T00:00:002014The dynamic microbiome.Authorship 5643881Authorship 4677544Authorship 45634313Authorship 5728676Authorship 301794Authorship 4185427Authorship 805492825762151Yaung SJ, Deng L, Li N, Braff JL, Church GM, Bry L, Wang HH, Gerber GKMolecular systems biologyImproving microbial fitness in the mammalian gut by in vivo temporal functional metagenomics. Mol Syst Biol. 2015 Jan; 11(1):788.Mol Syst Biol2015-03-11T00:00:002015Improving microbial fitness in the mammalian gut by in vivo temporal functional metagenomics.MarikaZiesackMarika Ziesack, Ph.D.101784Ziesack, MarikaScholar, VisitingAuthorship 813843826148351Yaung SJ, Deng L, Li N, Braff JL, Church GM, Bry L, Wang HH, Gerber GKMolecular systems biologyImproving microbial fitness in the mammalian gut by in vivo temporal functional metagenomics. Mol Syst Biol. 2015 Mar; 11(3):788.Mol Syst Biol2015-03-01T00:00:002015Improving microbial fitness in the mammalian gut by in vivo temporal functional metagenomics.Authorship 825699626231118Wang S, Charbonnier LM, Noval Rivas M, Georgiev P, Li N, Gerber G, Bry L, Chatila TAImmunityMyD88 Adaptor-Dependent Microbial Sensing by Regulatory T Cells Promotes Mucosal Tolerance and Enforces Commensalism. Immunity. 2015 Aug 18; 43(2):289-303.Immunity2015-07-28T00:00:002015MyD88 Adaptor-Dependent Microbial Sensing by Regulatory T Cells Promotes Mucosal Tolerance and Enforces Commensalism.Authorship 8553601326098131Louis DN, Feldman M, Carter AB, Dighe AS, Pfeifer JD, Bry L, Almeida JS, Saltz J, Braun J, Tomaszewski JE, Gilbertson JR, Sinard JH, Gerber GK, Galli SJ, Golden JA, Becich MJArchives of pathology & laboratory medicineComputational Pathology: A Path Ahead. Arch Pathol Lab Med. 2016 Jan; 140(1):41-50.Arch Pathol Lab Med2015-06-22T00:00:002015Computational Pathology: A Path Ahead.Authorship 880243627086647Allegretti JR, Kearney S, Li N, Bogart E, Bullock K, Gerber GK, Bry L, Clish CB, Alm E, Korzenik JRAlimentary pharmacology & therapeuticsRecurrent Clostridium difficile infection associates with distinct bile acid and microbiome profiles. Aliment Pharmacol Ther. 2016 06; 43(11):1142-53.Aliment Pharmacol Ther2016-04-18T00:00:002016Recurrent Clostridium difficile infection associates with distinct bile acid and microbiome profiles.Authorship 8858591527259475Bucci V, Tzen B, Li N, Simmons M, Tanoue T, Bogart E, Deng L, Yeliseyev V, Delaney ML, Liu Q, Olle B, Stein RR, Honda K, Bry L, Gerber GKGenome biologyMDSINE: Microbial Dynamical Systems INference Engine for microbiome time-series analyses. Genome Biol. 2016 06 03; 17(1):121.Genome Biol2016-06-03T00:00:002016MDSINE: Microbial Dynamical Systems INference Engine for microbiome time-series analyses.Authorship 968992Authorship 8891792327352007Jangi S, Gandhi R, Cox LM, Li N, von Glehn F, Yan R, Patel B, Mazzola MA, Liu S, Glanz BL, Cook S, Tankou S, Stuart F, Melo K, Nejad P, Smith K, Topçuolu BD, Holden J, Kivisäkk P, Chitnis T, De Jager PL, Quintana FJ, Gerber GK, Bry L, Weiner HLNature communicationsAlterations of the human gut microbiome in multiple sclerosis. Nat Commun. 2016 06 28; 7:12015.Nat Commun2016-06-28T00:00:002016Alterations of the human gut microbiome in multiple sclerosis.2Assistant Professor1Associate Professor0Full Professor5Other Faculty27775551Fujisaka S, Ussar S, Clish C, Devkota S, Dreyfuss JM, Sakaguchi M, Soto M, Konishi M, Softic S, Altindis E, Li N, Gerber G, Bry L, Kahn CRThe Journal of clinical investigationAntibiotic effects on gut microbiota and metabolism are host dependent. J Clin Invest. 2016 12 01; 126(12):4430-4443.J Clin Invest2016-10-24T00:00:002016Antibiotic effects on gut microbiota and metabolism are host dependent.Authorship 5713622Authorship 951070728096258Ussar S, Haering MF, Fujisaka S, Lutter D, Lee KY, Li N, Gerber GK, Bry L, Kahn CRDiabetesRegulation of Glucose Uptake and Enteroendocrine Function by the Intestinal Epithelial Insulin Receptor. Diabetes. 2017 04; 66(4):886-896.Diabetes2017-01-17T00:00:002017Regulation of Glucose Uptake and Enteroendocrine Function by the Intestinal Epithelial Insulin Receptor.16900145Qi Y, Rolfe A, MacIsaac KD, Gerber GK, Pokholok D, Zeitlinger J, Danford T, Dowell RD, Fraenkel E, Jaakkola TS, Young RA, Gifford DKNature biotechnologyHigh-resolution computational models of genome binding events. Nat Biotechnol. 2006 Aug; 24(8):963-70.Nat Biotechnol2006-08-01T00:00:002006High-resolution computational models of genome binding events.12934016Bar-Joseph Z, Gerber G, Simon I, Gifford DK, Jaakkola TSProceedings of the National Academy of Sciences of the United States of AmericaComparing the continuous representation of time-series expression profiles to identify differentially expressed genes. Proc Natl Acad Sci U S A. 2003 Sep 02; 100(18):10146-51.Proc Natl Acad Sci U S A2003-08-21T00:00:002003Comparing the continuous representation of time-series expression profiles to identify differentially expressed genes.17696603Gerber GK, Dowell RD, Jaakkola TS, Gifford DKPLoS computational biologyAutomated discovery of functional generality of human gene expression programs. PLoS Comput Biol. 2007 Aug; 3(8):e148.PLoS Comput Biol2007-06-13T00:00:002007Automated discovery of functional generality of human gene expression programs.14555958Bar-Joseph Z, Gerber GK, Lee TI, Rinaldi NJ, Yoo JY, Robert F, Gordon DB, Fraenkel E, Jaakkola TS, Young RA, Gifford DKNature biotechnologyComputational discovery of gene modules and regulatory networks. Nat Biotechnol. 2003 Nov; 21(11):1337-42.Nat Biotechnol2003-10-12T00:00:002003Computational discovery of gene modules and regulatory networks.Authorship 985746828553941Riglar DT, Giessen TW, Baym M, Kerns SJ, Niederhuber MJ, Bronson RT, Kotula JW, Gerber GK, Way JC, Silver PANature biotechnologyEngineered bacteria can function in the mammalian gut long-term as live diagnostics of inflammation. Nat Biotechnol. 2017 Jul; 35(7):653-658.Nat Biotechnol2017-05-29T00:00:002017Engineered bacteria can function in the mammalian gut long-term as live diagnostics of inflammation.Authorship 9943551328678006Redhu NS, Bakthavatchalu V, Conaway EA, Shouval DS, Tsou A, Goettel JA, Biswas A, Wang C, Field M, Muller W, Bleich A, Li N, Gerber GK, Bry L, Fox JG, Snapper SB, Horwitz BHeLifeMacrophage dysfunction initiates colitis during weaning of infant mice lacking the interleukin-10 receptor. Elife. 2017 07 05; 6.Elife2017-07-05T00:00:002017Macrophage dysfunction initiates colitis during weaning of infant mice lacking the interleukin-10 receptor.12399584Lee TI, Rinaldi NJ, Robert F, Odom DT, Bar-Joseph Z, Gerber GK, Hannett NM, Harbison CT, Thompson CM, Simon I, Zeitlinger J, Jennings EG, Murray HL, Gordon DB, Ren B, Wyrick JJ, Tagne JB, Volkert TL, Fraenkel E, Gifford DK, Young RAScience (New York, N.Y.)Transcriptional regulatory networks in Saccharomyces cerevisiae. Science. 2002 Oct 25; 298(5594):799-804.Science2002-10-25T00:00:002002Transcriptional regulatory networks in Saccharomyces cerevisiae.12935332Bar-Joseph Z, Gerber GK, Gifford DK, Jaakkola TS, Simon IJournal of computational biology : a journal of computational molecular cell biologyContinuous representations of time-series gene expression data. J Comput Biol. 2003; 10(3-4):341-56.J Comput Biol2003-01-01T00:00:002003Continuous representations of time-series gene expression data.60 Fenwood RdBrigham and Women's HospitalHMS Department of Pathology, BTM 8002M60 Fenwood RdBoston02115MA22876171Gerber GK, Onderdonk AB, Bry LPLoS computational biologyInferring dynamic signatures of microbes in complex host ecosystems. PLoS Comput Biol. 2012; 8(8):e1002624.PLoS Comput Biol2012-08-02T00:00:002012Inferring dynamic signatures of microbes in complex host ecosystems.23201093Noval Rivas M, Burton OT, Wise P, Zhang YQ, Hobson SA, Garcia Lloret M, Chehoud C, Kuczynski J, DeSantis T, Warrington J, Hyde ER, Petrosino JF, Gerber GK, Bry L, Oettgen HC, Mazmanian SK, Chatila TAThe Journal of allergy and clinical immunologyA microbiota signature associated with experimental food allergy promotes allergic sensitization and anaphylaxis. J Allergy Clin Immunol. 2013 Jan; 131(1):201-12.J Allergy Clin Immunol2012-11-30T00:00:002012A microbiota signature associated with experimental food allergy promotes allergic sensitization and anaphylaxis.