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Alexis Lomakin, PH.D.

TitleResearch Fellow in Cell Biology (INT)
InstitutionHarvard Medical School
DepartmentCell Biology
AddressHarvard Medical School
Bldg C
240 Longwood Ave
Boston MA 02115

 Biography 
 awards and honors
2000 - 2001The George Soros Foundation Scholar
2001 - 2001UNESCO Natural Sciences Student Prize, Man and the Biosphere Program (MAB)
2005 - 2005The Weizmann Institute of Science's annual Kupcinet-Getz International Science School Scholar
2005 - 2005The President of the Russian Federation Vladimir Putin Award for Academic Excellence
2005 - 2005The Ludwig Institute for Cancer Research International Program Funding, Participant
2006 - 2009The Fogarty International Research Collaboration Award (FIRCA) Program, Participant
2012 - 2015The Leukemia & Lymphoma Society Fellow, Career Development Program
2012 - 2012The American Society for Cell Biology Postdoctoral Award

 Overview 
 overview
Topic: Translating Morphodynamic Signatures of the Cytoskeleton into Large-Scale Cell Organization and Motility

One of the things that I’ve always found most fascinating and really most puzzling about biological cells is their ability to take structural information that is originally encoded at the level of individual proteins and somehow leverage that structural information to build very large objects, large organized structures that can extend throughout the entire size of the cell, many orders of magnitude larger than the individual proteins that make them up. As a particular example of this, I’d like for you to consider my favorite proteins, which are the cytoskeletal proteins, called actin and tubulin. The cytoskeletal proteins serve as building blocks in creating the dynamic cellular architecture that defines functional shape of the cell and enables such fundamental physiological processes as cell motility and cell division. This is why actin filaments and microtubules, assembled from the cytoskeletal proteins, have been extensively studied by biochemists, structural biologists, and microscopists. However, the underlying mechanisms by which the cytoskeletal elements are cooperatively organized and remodeled into specific cellular architectures, which are then conveyed over large scales into observable cell morphologies, remain unclear.

My global objective is to uncover a universal, evolutionary conserved mechanism for how the large-scale cell organization and motility is emerged from a combinatorial interplay among actin filaments and microtubules.

As a cell biologist, I work in an extremely organic manner, combining digital light microscopy, modern genetic and combinatorial chemistry tools, quantitative imaging and biochemical analyses, high performance computing and mathematical modeling.

The ability to work in all those different vocabularies has been offered to me when I joined the Danuser lab of Harvard University. In the lab we maintain an active dialog between research fellows with expertise in computer science, physics, chemistry, and different areas of biology.


 Bibliographic 
 selected publications
Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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  1. Lomakin AJ, Kraikivski P, Semenova I, Ikeda K, Zaliapin I, Tirnauer JS, Akhmanova A, Rodionov V. Stimulation of the CLIP-170--dependent capture of membrane organelles by microtubules through fine tuning of microtubule assembly dynamics. Mol Biol Cell. 2011 Nov; 22(21):4029-37.
    View in: PubMed
  2. Lomakin AY, Nadezhdina ES. Dynamics of nonmembranous cell components: role of active transport along microtubules. Biochemistry (Mosc). 2010 Jan; 75(1):7-18.
    View in: PubMed
  3. Nadezhdina ES, Lomakin AJ, Shpilman AA, Chudinova EM, Ivanov PA. Microtubules govern stress granule mobility and dynamics. Biochim Biophys Acta. 2010 Mar; 1803(3):361-71.
    View in: PubMed
  4. Jeffrey Axelrod (Stanford University School of Medicine, CA, USA, and Faculty of 1000, Section of Developmental Biology). Faculty of 1000 evaluation for Lomakin AJ et al. CLIP-170-dependent capture of membrane organelles by microtubules initiates minus-end directed transport. Dev Cell. 2009 Sep; 17(3):323-33 (Faculty of 1000 rating: 8.0 “Must read” ). 2009.
  5. Lomakin AJ, Semenova I, Zaliapin I, Kraikivski P, Nadezhdina E, Slepchenko BM, Akhmanova A, Rodionov V. CLIP-170-dependent capture of membrane organelles by microtubules initiates minus-end directed transport. Dev Cell. 2009 Sep; 17(3):323-33.
    View in: PubMed
  6. Gasparian ME, Domnina LV, Ivanova OY, Izyumov DS, Lomakin AY, Popova EN, Yagolovich AV, Pletjushkina OY, Dolgikh DA, Chernyak BV. Cytoskeleton inhibitors combined with TRAIL induce apoptosis in HeLa carcinoma cells overexpressing antiapoptotic protein Bcl-2. Biochemistry (Mosc). 2008 Mar; 73(3):358-62.
    View in: PubMed
  7. Timchenko MA, Rybalkina EY, Lomakin AY, Evlakov KI, Serdyuk IN, Ivanovskaya MG. Modified DNA fragments specifically and irreversibly bind transcription factor NF-kappaB in lysates of human tumor cells. Biochemistry (Mosc). 2006 Apr; 71(4):454-60.
    View in: PubMed
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