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Last Name
Institution

Jeffrey Daniel Macklis, M.D., Dr.Sc.Tech.

TitleProfessor of Stem Cell and Regenerative Biology
InstitutionFaculty of Arts & Sciences
DepartmentStem Cell and Regenerative Biology
AddressFAS - Harvard, Bauer Laboratories, 1st floor,
Depts of Stem Cell & Regenerative Biology; Neurology
7 Divinity Ave
Cambridge MA 02138
Phone617/495-5413
Fax617/726-2310
Other Positions
TitleMember of the Affiliated Faculty of the Harvard-MIT Division of Health Sciences and Technology
InstitutionMassachusetts Institute of Technology
DepartmentHealth Sciences and Technology

TitleProfessor of Neurology
InstitutionMassachusetts General Hospital
DepartmentNeurology

TitleProfessor of Surgery
InstitutionMassachusetts General Hospital
DepartmentSurgery


 Mentoring 
 current student opportunities
Available: 07/01/12, Expires: 12/31/15

Depending on the student's background and extent of undergraduate research experience in neuroscience, developmental biology, molecular biology, and related fields, a four-year or five-year (e.g. with HHMI year-long funding) HMS/HST research project can be planned and undertaken.

 completed student projects
Molecular Development of Corticospinal Motor Neurons in vivo
Summer, 05/01/05 - 08/26/05
Computational Tools for Mapping Gene Regulatory Networks of Projection Neuron Subtype Differentiation
Summer, 05/30/07 - 08/30/07
Molecular Mechanisms of Cortical Projection Neuron Differentiation and Neurogenesis
Summer, 06/01/01 - 08/31/01
Genetic Expression Profile of Corticospinal Motor Neurons in Ctip2-deficient mice
Summer, 06/19/06 - 08/18/06

 Bibliographic 
 selected publications
Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
List All   |   Timeline
  1. Greig LC, Woodworth MB, Galazo MJ, Padmanabhan H, Macklis JD. Molecular logic of neocortical projection neuron specification, development and diversity. Nat Rev Neurosci. 2013 Nov; 14(11):755-69.
    View in: PubMed
  2. Ravits J, Appel S, Baloh RH, Barohn R, Rix Brooks B, Elman L, Floeter MK, Henderson C, Lomen-Hoerth C, Macklis JD, McCluskey L, Mitsumoto H, Przedborski S, Rothstein J, Trojanowski JQ, van den Berg LH, Ringel S. Deciphering amyotrophic lateral sclerosis: What phenotype, neuropathology and genetics are telling us about pathogenesis. Amyotroph Lateral Scler Frontotemporal Degener. 2013 May; 14 Suppl 1:5-18.
    View in: PubMed
  3. Cederquist GY, Azim E, Shnider SJ, Padmanabhan H, Macklis JD. Lmo4 establishes rostral motor cortex projection neuron subtype diversity. J Neurosci. 2013 Apr 10; 33(15):6321-32.
    View in: PubMed
  4. Woodworth MB, Custo Greig L, Kriegstein AR, Macklis JD. SnapShot: Cortical Development. Cell. 2012 Nov 9; 151(4):918-918.e1.
    View in: PubMed
  5. Sohur US, Padmanabhan HK, Kotchetkov IS, Menezes JR, Macklis JD. Anatomic and molecular development of corticostriatal projection neurons in mice. Cereb Cortex. 2014 Feb; 24(2):293-303.
    View in: PubMed
  6. Tharin S, Kothapalli CR, Ozdinler PH, Pasquina L, Chung S, Varner J, Devalence S, Kamm R, Macklis JD. A microfluidic device to investigate axon targeting by limited numbers of purified cortical projection neuron subtypes. Integr Biol (Camb). 2012 Oct 22; 4(11):1398-405.
    View in: PubMed
  7. Macklis JD. Human adult olfactory bulb neurogenesis? Novelty is the best policy. Neuron. 2012 May 24; 74(4):595-6.
    View in: PubMed
  8. Emsley JG, Menezes JR, Madeiro Da Costa RF, Martinez AM, Macklis JD. Identification of radial glia-like cells in the adult mouse olfactory bulb. Exp Neurol. 2012 Aug; 236(2):283-97.
    View in: PubMed
  9. Sohur US, Arlotta P, Macklis JD. Developmental Controls are Re-Expressed during Induction of Neurogenesis in the Neocortex of Young Adult Mice. Front Neurosci. 2012; 6:12.
    View in: PubMed
  10. Czupryn A, Zhou YD, Chen X, McNay D, Anderson MP, Flier JS, Macklis JD. Transplanted hypothalamic neurons restore leptin signaling and ameliorate obesity in db/db mice. Science. 2011 Nov 25; 334(6059):1133-7.
    View in: PubMed
  11. Jabaudon D, Shnider SJ, Tischfield DJ, Galazo MJ, Macklis JD. RORß induces barrel-like neuronal clusters in the developing neocortex. Cereb Cortex. 2012 May; 22(5):996-1006.
    View in: PubMed
  12. Ozdinler PH, Benn S, Yamamoto TH, Güzel M, Brown RH, Macklis JD. Corticospinal motor neurons and related subcerebral projection neurons undergo early and specific neurodegeneration in hSOD1G?³A transgenic ALS mice. J Neurosci. 2011 Mar 16; 31(11):4166-77.
    View in: PubMed
  13. Fame RM, MacDonald JL, Macklis JD. Development, specification, and diversity of callosal projection neurons. Trends Neurosci. 2011 Jan; 34(1):41-50.
    View in: PubMed
  14. Tomassy GS, De Leonibus E, Jabaudon D, Lodato S, Alfano C, Mele A, Macklis JD, Studer M. Area-specific temporal control of corticospinal motor neuron differentiation by COUP-TFI. Proc Natl Acad Sci U S A. 2010 Feb 23; 107(8):3576-81.
    View in: PubMed
  15. Kishi N, Macklis JD. MeCP2 functions largely cell-autonomously, but also non-cell-autonomously, in neuronal maturation and dendritic arborization of cortical pyramidal neurons. Exp Neurol. 2010 Mar; 222(1):51-8.
    View in: PubMed
  16. Molyneaux BJ, Arlotta P, Fame RM, MacDonald JL, MacQuarrie KL, Macklis JD. Novel subtype-specific genes identify distinct subpopulations of callosal projection neurons. J Neurosci. 2009 Sep 30; 29(39):12343-54.
    View in: PubMed
  17. Azim E, Jabaudon D, Fame RM, Macklis JD. SOX6 controls dorsal progenitor identity and interneuron diversity during neocortical development. Nat Neurosci. 2009 Oct; 12(10):1238-47.
    View in: PubMed
  18. Azim E, Shnider SJ, Cederquist GY, Sohur US, Macklis JD. Lmo4 and Clim1 progressively delineate cortical projection neuron subtypes during development. Cereb Cortex. 2009 Jul; 19 Suppl 1:i62-9.
    View in: PubMed
  19. Joshi PS, Molyneaux BJ, Feng L, Xie X, Macklis JD, Gan L. Bhlhb5 regulates the postmitotic acquisition of area identities in layers II-V of the developing neocortex. Neuron. 2008 Oct 23; 60(2):258-72.
    View in: PubMed
  20. Lai T, Jabaudon D, Molyneaux BJ, Azim E, Arlotta P, Menezes JR, Macklis JD. SOX5 controls the sequential generation of distinct corticofugal neuron subtypes. Neuron. 2008 Jan 24; 57(2):232-47.
    View in: PubMed
  21. Arlotta P, Molyneaux BJ, Jabaudon D, Yoshida Y, Macklis JD. Ctip2 controls the differentiation of medium spiny neurons and the establishment of the cellular architecture of the striatum. J Neurosci. 2008 Jan 16; 28(3):622-32.
    View in: PubMed
  22. Magavi SS, Macklis JD. Immunocytochemical analysis of neuronal differentiation. Methods Mol Biol. 2008; 438:345-52.
    View in: PubMed
  23. Magavi SS, Macklis JD. Identification of newborn cells by BrdU labeling and immunocytochemistry in vivo. Methods Mol Biol. 2008; 438:335-43.
    View in: PubMed
  24. Catapano LA, Magavi SS, Macklis JD. Neuroanatomical tracing of neuronal projections with Fluoro-Gold. Methods Mol Biol. 2008; 438:353-9.
    View in: PubMed
  25. Gao X, Arlotta P, Macklis JD, Chen J. Conditional knock-out of beta-catenin in postnatal-born dentate gyrus granule neurons results in dendritic malformation. J Neurosci. 2007 Dec 26; 27(52):14317-25.
    View in: PubMed
  26. Breunig JJ, Arellano JI, Macklis JD, Rakic P. Everything that glitters isn't gold: a critical review of postnatal neural precursor analyses. Cell Stem Cell. 2007 Dec 13; 1(6):612-27.
    View in: PubMed
  27. Molyneaux BJ, Arlotta P, Menezes JR, Macklis JD. Neuronal subtype specification in the cerebral cortex. Nat Rev Neurosci. 2007 Jun; 8(6):427-37.
    View in: PubMed
  28. Molyneaux BJ, Arlotta P, Macklis JD. Molecular development of corticospinal motor neuron circuitry. Novartis Found Symp. 2007; 288:3-15; discussion 15-20, 96-8.
    View in: PubMed
  29. Ozdinler PH, Macklis JD. IGF-I specifically enhances axon outgrowth of corticospinal motor neurons. Nat Neurosci. 2006 Nov; 9(11):1371-81.
    View in: PubMed
  30. Sohur US, Emsley JG, Mitchell BD, Macklis JD. Adult neurogenesis and cellular brain repair with neural progenitors, precursors and stem cells. Philos Trans R Soc Lond B Biol Sci. 2006 Sep 29; 361(1473):1477-97.
    View in: PubMed
  31. Emsley JG, Macklis JD. Astroglial heterogeneity closely reflects the neuronal-defined anatomy of the adult murine CNS. Neuron Glia Biol. 2006 Aug; 2(3):175-86.
    View in: PubMed
  32. Steele AD, Emsley JG, Ozdinler PH, Lindquist S, Macklis JD. Prion protein (PrPc) positively regulates neural precursor proliferation during developmental and adult mammalian neurogenesis. Proc Natl Acad Sci U S A. 2006 Feb 28; 103(9):3416-21.
    View in: PubMed
  33. Magavi SS, Mitchell BD, Szentirmai O, Carter BS, Macklis JD. Adult-born and preexisting olfactory granule neurons undergo distinct experience-dependent modifications of their olfactory responses in vivo. J Neurosci. 2005 Nov 16; 25(46):10729-39.
    View in: PubMed
  34. Molyneaux BJ, Arlotta P, Hirata T, Hibi M, Macklis JD. Fezl is required for the birth and specification of corticospinal motor neurons. Neuron. 2005 Sep 15; 47(6):817-31.
    View in: PubMed
  35. Kishi N, Macklis JD. Dissecting MECP2 function in the central nervous system. J Child Neurol. 2005 Sep; 20(9):753-9.
    View in: PubMed
  36. Arlotta P, Macklis JD. Archeo-cell biology: carbon dating is not just for pots and dinosaurs. Cell. 2005 Jul 15; 122(1):4-6.
    View in: PubMed
  37. Emsley JG, Mitchell BD, Kempermann G, Macklis JD. Adult neurogenesis and repair of the adult CNS with neural progenitors, precursors, and stem cells. Prog Neurobiol. 2005 Apr; 75(5):321-41.
    View in: PubMed
  38. Mitchell BD, Macklis JD. Large-scale maintenance of dual projections by callosal and frontal cortical projection neurons in adult mice. J Comp Neurol. 2005 Jan 31; 482(1):17-32.
    View in: PubMed
  39. Arlotta P, Molyneaux BJ, Chen J, Inoue J, Kominami R, Macklis JD. Neuronal subtype-specific genes that control corticospinal motor neuron development in vivo. Neuron. 2005 Jan 20; 45(2):207-21.
    View in: PubMed
  40. Chen J, Magavi SS, Macklis JD. Neurogenesis of corticospinal motor neurons extending spinal projections in adult mice. Proc Natl Acad Sci U S A. 2004 Nov 16; 101(46):16357-62.
    View in: PubMed
  41. Kishi N, Macklis JD. MECP2 is progressively expressed in post-migratory neurons and is involved in neuronal maturation rather than cell fate decisions. Mol Cell Neurosci. 2004 Nov; 27(3):306-21.
    View in: PubMed
  42. Emsley JG, Mitchell BD, Magavi SS, Arlotta P, Macklis JD. The repair of complex neuronal circuitry by transplanted and endogenous precursors. NeuroRx. 2004 Oct; 1(4):452-71.
    View in: PubMed
  43. Emsley JG, Arlotta P, Macklis JD. Star-cross'd neurons: astroglial effects on neural repair in the adult mammalian CNS. Trends Neurosci. 2004 May; 27(5):238-40.
    View in: PubMed
  44. Catapano LA, Arlotta P, Cage TA, Macklis JD. Stage-specific and opposing roles of BDNF, NT-3 and bFGF in differentiation of purified callosal projection neurons toward cellular repair of complex circuitry. Eur J Neurosci. 2004 May; 19(9):2421-34.
    View in: PubMed
  45. Mellough CB, Cui Q, Spalding KL, Symons NA, Pollett MA, Snyder EY, Macklis JD, Harvey AR. Fate of multipotent neural precursor cells transplanted into mouse retina selectively depleted of retinal ganglion cells. Exp Neurol. 2004 Mar; 186(1):6-19.
    View in: PubMed
  46. Mitchell BD, Emsley JG, Magavi SS, Arlotta P, Macklis JD. Constitutive and induced neurogenesis in the adult mammalian brain: manipulation of endogenous precursors toward CNS repair. Dev Neurosci. 2004 Mar-Aug; 26(2-4):101-17.
    View in: PubMed
  47. Eyding D, Macklis JD, Neubacher U, Funke K, Wörgötter F. Selective elimination of corticogeniculate feedback abolishes the electroencephalogram dependence of primary visual cortical receptive fields and reduces their spatial specificity. J Neurosci. 2003 Aug 6; 23(18):7021-33.
    View in: PubMed
  48. Arlotta P, Magavi SS, Macklis JD. Induction of adult neurogenesis: molecular manipulation of neural precursors in situ. Ann N Y Acad Sci. 2003 Jun; 991:229-36.
    View in: PubMed
  49. Arlotta P, Magavi SS, Macklis JD. Molecular manipulation of neural precursors in situ: induction of adult cortical neurogenesis. Exp Gerontol. 2003 Jan-Feb; 38(1-2):173-82.
    View in: PubMed
  50. Wörgötter F, Eyding D, Macklis JD, Funke K. The influence of the corticothalamic projection on responses in thalamus and cortex. Philos Trans R Soc Lond B Biol Sci. 2002 Dec 29; 357(1428):1823-34.
    View in: PubMed
  51. Fricker-Gates RA, Shin JJ, Tai CC, Catapano LA, Macklis JD. Late-stage immature neocortical neurons reconstruct interhemispheric connections and form synaptic contacts with increased efficiency in adult mouse cortex undergoing targeted neurodegeneration. J Neurosci. 2002 May 15; 22(10):4045-56.
    View in: PubMed
  52. Magavi SS, Macklis JD. Induction of neuronal type-specific neurogenesis in the cerebral cortex of adult mice: manipulation of neural precursors in situ. Brain Res Dev Brain Res. 2002 Mar 31; 134(1-2):57-76.
    View in: PubMed
  53. Magavi SS, Macklis JD. Identification of newborn cells by BrdU labeling and immunocytochemistry in vivo. Methods Mol Biol. 2002; 198:283-90.
    View in: PubMed
  54. Catapano LA, Magavi SS, Macklis JD. Neuroanatomical tracing of neuronal projections with Fluoro-Gold. Methods Mol Biol. 2002; 198:299-304.
    View in: PubMed
  55. Magavi SS, Macklis JD. Immunocytochemical analysis of neuronal differentiation. Methods Mol Biol. 2002; 198:291-7.
    View in: PubMed
  56. Magavi SS, Macklis JD. Manipulation of neural precursors in situ: induction of neurogenesis in the neocortex of adult mice. Neuropsychopharmacology. 2001 Dec; 25(6):816-35.
    View in: PubMed
  57. Catapano LA, Arnold MW, Perez FA, Macklis JD. Specific neurotrophic factors support the survival of cortical projection neurons at distinct stages of development. J Neurosci. 2001 Nov 15; 21(22):8863-72.
    View in: PubMed
  58. Macklis JD. Neurobiology: New memories from new neurons. Nature. 2001 Mar 15; 410(6826):314-5, 317.
    View in: PubMed
  59. Shin JJ, Fricker-Gates RA, Perez FA, Leavitt BR, Zurakowski D, Macklis JD. Transplanted neuroblasts differentiate appropriately into projection neurons with correct neurotransmitter and receptor phenotype in neocortex undergoing targeted projection neuron degeneration. J Neurosci. 2000 Oct 1; 20(19):7404-16.
    View in: PubMed
  60. Magavi SS, Leavitt BR, Macklis JD. Induction of neurogenesis in the neocortex of adult mice. Nature. 2000 Jun 22; 405(6789):951-5.
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  61. Scharff C, Kirn JR, Grossman M, Macklis JD, Nottebohm F. Targeted neuronal death affects neuronal replacement and vocal behavior in adult songbirds. Neuron. 2000 Feb; 25(2):481-92.
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  62. Gates MA, Tai CC, Macklis JD. Neocortical neurons lacking the protein-tyrosine kinase B receptor display abnormal differentiation and process elongation in vitro and in vivo. Neuroscience. 2000; 98(3):437-47.
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  63. Gates MA, Fricker-Gates RA, Macklis JD. Reconstruction of cortical circuitry. Prog Brain Res. 2000; 127:115-56.
    View in: PubMed
  64. Catapano LA, Sheen VL, Leavitt BR, Macklis JD. Differentiation of transplanted neural precursors varies regionally in adults striatum. Neuroreport. 1999 Dec 16; 10(18):3971-7.
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  65. Sheen VL, Arnold MW, Wang Y, Macklis JD. Neural precursor differentiation following transplantation into neocortex is dependent on intrinsic developmental state and receptor competence. Exp Neurol. 1999 Jul; 158(1):47-62.
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  66. Leavitt BR, Hernit-Grant CS, Macklis JD. Mature astrocytes transform into transitional radial glia within adult mouse neocortex that supports directed migration of transplanted immature neurons. Exp Neurol. 1999 May; 157(1):43-57.
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  67. Lanier LM, Gates MA, Witke W, Menzies AS, Wehman AM, Macklis JD, Kwiatkowski D, Soriano P, Gertler FB. Mena is required for neurulation and commissure formation. Neuron. 1999 Feb; 22(2):313-25.
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  68. Wang Y, Sheen VL, Macklis JD. Cortical interneurons upregulate neurotrophins in vivo in response to targeted apoptotic degeneration of neighboring pyramidal neurons. Exp Neurol. 1998 Dec; 154(2):389-402.
    View in: PubMed
  69. Snyder EY, Yoon C, Flax JD, Macklis JD. Multipotent neural precursors can differentiate toward replacement of neurons undergoing targeted apoptotic degeneration in adult mouse neocortex. Proc Natl Acad Sci U S A. 1997 Oct 14; 94(21):11663-8.
    View in: PubMed
  70. Hernit-Grant CS, Macklis JD. Embryonic neurons transplanted to regions of targeted photolytic cell death in adult mouse somatosensory cortex re-form specific callosal projections. Exp Neurol. 1996 May; 139(1):131-42.
    View in: PubMed
  71. Sheen VL, Macklis JD. Targeted neocortical cell death in adult mice guides migration and differentiation of transplanted embryonic neurons. J Neurosci. 1995 Dec; 15(12):8378-92.
    View in: PubMed
  72. Snyder EY, Macklis JD. Multipotent neural progenitor or stem-like cells may be uniquely suited for therapy for some neurodegenerative conditions. Clin Neurosci. 1995-1996; 3(5):310-6.
    View in: PubMed
  73. Sheen VL, Macklis JD. Apoptotic mechanisms in targeted neuronal cell death by chromophore-activated photolysis. Exp Neurol. 1994 Nov; 130(1):67-81.
    View in: PubMed
  74. Macklis JD. Transplanted neocortical neurons migrate selectively into regions of neuronal degeneration produced by chromophore-targeted laser photolysis. J Neurosci. 1993 Sep; 13(9):3848-63.
    View in: PubMed
  75. Madison RD, Macklis JD. Noninvasively induced degeneration of neocortical pyramidal neurons in vivo: selective targeting by laser activation of retrogradely transported photolytic chromophore. Exp Neurol. 1993 Jun; 121(2):153-9.
    View in: PubMed
  76. Sheen VL, Dreyer EB, Macklis JD. Calcium-mediated neuronal degeneration following singlet oxygen production. Neuroreport. 1992 Aug; 3(8):705-8.
    View in: PubMed
  77. Macklis RM, Macklis JD. Historical and phrenologic reflections on the nonmotor functions of the cerebellum: love under the tent? Neurology. 1992 Apr; 42(4):928-32.
    View in: PubMed
  78. Liu GT, Carrazana EJ, Macklis JD, Mikati MA. Delayed oculogyric crises associated with striatocapsular infarction. J Clin Neuroophthalmol. 1991 Sep; 11(3):198-201.
    View in: PubMed
  79. Macklis JD, Madison RD. Neuroblastoma grafts are noninvasively removed within mouse neocortex by selective laser activation of intracellular photolytic chromophore. J Neurosci. 1991 Jul; 11(7):2055-62.
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  80. Macklis JD, Quattrochi JJ. Restricted diffusion and stability of carbachol-fluorescent nanospheres in-vivo. Neuroreport. 1991 May; 2(5):247-50.
    View in: PubMed
  81. Madison R, Macklis JD, Thies C. Latex nanosphere delivery system (LNDS): novel nanometer-sized carriers of fluorescent dyes and active agents selectively target neuronal subpopulations via uptake and retrograde transport. Brain Res. 1990 Jul 2; 522(1):90-8.
    View in: PubMed
  82. Macklis JD, Madison RD. Progressive incorporation of propidium iodide in cultured mouse neurons correlates with declining electrophysiological status: a fluorescence scale of membrane integrity. J Neurosci Methods. 1990 Jan; 31(1):43-6.
    View in: PubMed
  83. Quattrochi JJ, Mamelak AN, Madison RD, Macklis JD, Hobson JA. Mapping neuronal inputs to REM sleep induction sites with carbachol-fluorescent microspheres. Science. 1989 Sep 1; 245(4921):984-6.
    View in: PubMed
  84. Schick RM, Jolesz F, Barnes PD, Macklis JD. MR diagnosis of dural venous sinus thrombosis complicating L-asparaginase therapy. Comput Med Imaging Graph. 1989 Jul-Aug; 13(4):319-27.
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  85. Madison RD, Macklis JD, Frosch MP. Non-invasive laser microsurgery selectively damages populations of labeled mouse neurons: dependence on incident laser dose and absorption. Brain Res. 1988 Mar 29; 445(1):101-10.
    View in: PubMed
  86. Brasier AR, Macklis JD, Vaughan D, Warner L, Kirshenbaum JM. Myopericarditis as an initial presentation of meningococcemia. Unusual manifestation of infection with serotype W135. Am J Med. 1987 Mar 23; 82(3 Spec No):641-4.
    View in: PubMed
  87. Macklis JD, Madison R. Unfocused laser illumination kills dye-targeted mouse neurons by selective photothermolysis. Brain Res. 1985 Dec 16; 359(1-2):158-65.
    View in: PubMed
  88. Anderson P, Macklis J, Brown M, Ory D. Eosinophilic cerebrospinal fluid pleocytosis and cryptococcal meningitis. Ann Intern Med. 1985 Aug; 103(2):306-7.
    View in: PubMed
  89. Macklis JD, Sidman RL, Shine HD. Cross-linked collagen surface for cell culture that is stable, uniform, and optically superior to conventional surfaces. In Vitro Cell Dev Biol. 1985 Mar; 21(3 Pt 1):189-94.
    View in: PubMed
  90. Macklis JD, Ketterer FD, Cravalho EG. Temperature dependence of the microwave properties of aqueous solutions of ethylene glycol between +15 degrees C and -70 degrees C. Cryobiology. 1979 Jun; 16(3):272-86.
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  91. Macklis JD, Ketterer FD. Microwave properties of cryoprotectants. Cryobiology. 1978 Dec; 15(6):627-35.
    View in: PubMed
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