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Gaudenz Danuser, PH.D.

TitleVisiting Professor of Cell Biology
InstitutionHarvard Medical School
DepartmentCell Biology
AddressHarvard Medical School
Cell Biology LHRRB - 3rd floor
240 Longwood Ave
Boston MA 02115
Phone617/432-7947

 Bibliographic 
 selected publications
Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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  1. Lowery LA, Stout A, Faris AE, Ding L, Baird MA, Davidson MW, Danuser G, Van Vactor D. Growth cone-specific functions of XMAP215 in restricting microtubule dynamics and promoting axonal outgrowth. Neural Dev. 2013; 8:22.
    View in: PubMed
  2. Smole Z, Thoma CR, Applegate KT, Duda M, Gutbrodt KL, Danuser G, Krek W. Tumor Suppressor NF2/Merlin Is a Microtubule Stabilizer. Cancer Res. 2014 Jan 1; 74(1):353-62.
    View in: PubMed
  3. Zawistowski JS, Sabouri-Ghomi M, Danuser G, Hahn KM, Hodgson L. A RhoC Biosensor Reveals Differences in the Activation Kinetics of RhoA and RhoC in Migrating Cells. PLoS One. 2013; 8(11):e79877.
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  4. Marco E, Dorn JF, Hsu PH, Jaqaman K, Sorger PK, Danuser G. S. cerevisiae Chromosomes Biorient via Gradual Resolution of Syntely between S Phase and Anaphase. Cell. 2013 Aug 29; 154(5):1127-39.
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  5. Aguet F, Antonescu CN, Mettlen M, Schmid SL, Danuser G. Advances in Analysis of Low Signal-to-Noise Images Link Dynamin and AP2 to the Functions of an Endocytic Checkpoint. Dev Cell. 2013 Aug 12; 26(3):279-91.
    View in: PubMed
  6. Danuser G, Allard J, Mogilner A. Mathematical modeling of eukaryotic cell migration: insights beyond experiments. Annu Rev Cell Dev Biol. 2013 Oct 6; 29:501-28.
    View in: PubMed
  7. Thievessen I, Thompson PM, Berlemont S, Plevock KM, Plotnikov SV, Zemljic-Harpf A, Ross RS, Davidson MW, Danuser G, Campbell SL, Waterman CM. Vinculin-actin interaction couples actin retrograde flow to focal adhesions, but is dispensable for focal adhesion growth. J Cell Biol. 2013 Jul 8; 202(1):163-77.
    View in: PubMed
  8. Long JB, Bagonis M, Lowery LA, Lee H, Danuser G, Van Vactor D. Multiparametric Analysis of CLASP-Interacting Protein Functions during Interphase Microtubule Dynamics. Mol Cell Biol. 2013 Apr; 33(8):1528-45.
    View in: PubMed
  9. Vilela M, Halidi N, Besson S, Elliott H, Hahn K, Tytell J, Danuser G. Fluctuation analysis of activity biosensor images for the study of information flow in signaling pathways. Methods Enzymol. 2013; 519:253-76.
    View in: PubMed
  10. Ng MR, Besser A, Danuser G, Brugge JS. Substrate stiffness regulates cadherin-dependent collective migration through myosin-II contractility. J Cell Biol. 2012 Oct 29; 199(3):545-63.
    View in: PubMed
  11. Mendoza MC, Besson S, Danuser G. Quantitative fluorescent speckle microscopy (QFSM) to measure actin dynamics. Curr Protoc Cytom. 2012 Oct; Chapter 2:Unit2.18.
    View in: PubMed
  12. Nishimura Y, Applegate K, Davidson MW, Danuser G, Waterman CM. Automated screening of microtubule growth dynamics identifies MARK2 as a regulator of leading edge microtubules downstream of Rac1 in migrating cells. PLoS One. 2012; 7(7):e41413.
    View in: PubMed
  13. Loerke D, le Duc Q, Blonk I, Kerstens A, Spanjaard E, Machacek M, Danuser G, de Rooij J. Quantitative imaging of epithelial cell scattering identifies specific inhibitors of cell motility and cell-cell dissociation. Sci Signal. 2012 Jul 3; 5(231):rs5.
    View in: PubMed
  14. Reis GF, Yang G, Szpankowski L, Weaver C, Shah SB, Robinson JT, Hays TS, Danuser G, Goldstein LS. Molecular motor function in axonal transport in vivo probed by genetic and computational analysis in Drosophila. Mol Biol Cell. 2012 May; 23(9):1700-14.
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  15. Swedlow J, Danuser G. Scale integration: the structure and dynamics of macromolecular assemblies, cells and tissues. Curr Opin Cell Biol. 2012 Feb; 24(1):1-3.
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  16. Dittrich C, Burckhardt CJ, Danuser G. Delivery of membrane impermeable cargo into CHO cells by peptide nanoparticles targeted by a protein corona. Biomaterials. 2012 Mar; 33(9):2746-53.
    View in: PubMed
  17. Danuser G. Computer vision in cell biology. Cell. 2011 Nov 23; 147(5):973-8.
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  18. Welch CM, Elliott H, Danuser G, Hahn KM. Imaging the coordination of multiple signalling activities in living cells. Nat Rev Mol Cell Biol. 2011 Nov; 12(11):749-56.
    View in: PubMed
  19. Nunez D, Antonescu C, Mettlen M, Liu A, Schmid SL, Loerke D, Danuser G. Hotspots organize clathrin-mediated endocytosis by efficient recruitment and retention of nucleating resources. Traffic. 2011 Dec; 12(12):1868-78.
    View in: PubMed
  20. Gutierrez E, Tkachenko E, Besser A, Sundd P, Ley K, Danuser G, Ginsberg MH, Groisman A. High refractive index silicone gels for simultaneous total internal reflection fluorescence and traction force microscopy of adherent cells. PLoS One. 2011; 6(9):e23807.
    View in: PubMed
  21. Vilela M, Danuser G. What's wrong with correlative experiments? Nat Cell Biol. 2011 Sep; 13(9):1011.
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  22. Jaqaman K, Kuwata H, Touret N, Collins R, Trimble WS, Danuser G, Grinstein S. Cytoskeletal control of CD36 diffusion promotes its receptor and signaling function. Cell. 2011 Aug 19; 146(4):593-606.
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  23. Applegate KT, Besson S, Matov A, Bagonis MH, Jaqaman K, Danuser G. plusTipTracker: Quantitative image analysis software for the measurement of microtubule dynamics. J Struct Biol. 2011 Nov; 176(2):168-84.
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  24. Iwanicki MP, Davidowitz RA, Ng MR, Besser A, Muranen T, Merritt M, Danuser G, Ince TA, Ince T, Brugge JS. Ovarian cancer spheroids use myosin-generated force to clear the mesothelium. Cancer Discov. 2011 Jul; 1(2):144-57.
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  25. Delorme-Walker VD, Peterson JR, Chernoff J, Waterman CM, Danuser G, DerMardirossian C, Bokoch GM. Pak1 regulates focal adhesion strength, myosin IIA distribution, and actin dynamics to optimize cell migration. J Cell Biol. 2011 Jun 27; 193(7):1289-303.
    View in: PubMed
  26. Antonescu CN, Aguet F, Danuser G, Schmid SL. Phosphatidylinositol-(4,5)-bisphosphate regulates clathrin-coated pit initiation, stabilization, and size. Mol Biol Cell. 2011 Jul 15; 22(14):2588-600.
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  27. Tkachenko E, Sabouri-Ghomi M, Pertz O, Kim C, Gutierrez E, Machacek M, Groisman A, Danuser G, Ginsberg MH. Protein kinase A governs a RhoA-RhoGDI protrusion-retraction pacemaker in migrating cells. Nat Cell Biol. 2011 Jun; 13(6):660-7.
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  28. Loerke D, Mettlen M, Schmid SL, Danuser G. Measuring the hierarchy of molecular events during clathrin-mediated endocytosis. Traffic. 2011 Jul; 12(7):815-25.
    View in: PubMed
  29. Mendoza MC, Er EE, Zhang W, Ballif BA, Elliott HL, Danuser G, Blenis J. ERK-MAPK drives lamellipodia protrusion by activating the WAVE2 regulatory complex. Mol Cell. 2011 Mar 18; 41(6):661-71.
    View in: PubMed
  30. Myers KA, Applegate KT, Danuser G, Fischer RS, Waterman CM. Distinct ECM mechanosensing pathways regulate microtubule dynamics to control endothelial cell branching morphogenesis. J Cell Biol. 2011 Jan 24; 192(2):321-34.
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  31. Liu AP, Aguet F, Danuser G, Schmid SL. Local clustering of transferrin receptors promotes clathrin-coated pit initiation. J Cell Biol. 2010 Dec 27; 191(7):1381-93.
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  32. Thoma CR, Matov A, Gutbrodt KL, Hoerner CR, Smole Z, Krek W, Danuser G. Quantitative image analysis identifies pVHL as a key regulator of microtubule dynamic instability. J Cell Biol. 2010 Sep 20; 190(6):991-1003.
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  33. Matov A, Applegate K, Kumar P, Thoma C, Krek W, Danuser G, Wittmann T. Analysis of microtubule dynamic instability using a plus-end growth marker. Nat Methods. 2010 Sep; 7(9):761-8.
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  34. Antonescu CN, Danuser G, Schmid SL. Phosphatidic acid plays a regulatory role in clathrin-mediated endocytosis. Mol Biol Cell. 2010 Aug 15; 21(16):2944-52.
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  35. Wilson CA, Tsuchida MA, Allen GM, Barnhart EL, Applegate KT, Yam PT, Ji L, Keren K, Danuser G, Theriot JA. Myosin II contributes to cell-scale actin network treadmilling through network disassembly. Nature. 2010 May 20; 465(7296):373-7.
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  36. Enculescu M, Sabouri-Ghomi M, Danuser G, Falcke M. Modeling of protrusion phenotypes driven by the actin-membrane interaction. Biophys J. 2010 Apr 21; 98(8):1571-81.
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  37. Lim JI, Sabouri-Ghomi M, Machacek M, Waterman CM, Danuser G. Protrusion and actin assembly are coupled to the organization of lamellar contractile structures. Exp Cell Res. 2010 Aug 1; 316(13):2027-41.
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  38. Mettlen M, Loerke D, Yarar D, Danuser G, Schmid SL. Cargo- and adaptor-specific mechanisms regulate clathrin-mediated endocytosis. J Cell Biol. 2010 Mar 22; 188(6):919-33.
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  39. Jaqaman K, King EM, Amaro AC, Winter JR, Dorn JF, Elliott HL, McHedlishvili N, McClelland SE, Porter IM, Posch M, Toso A, Danuser G, McAinsh AD, Meraldi P, Swedlow JR. Kinetochore alignment within the metaphase plate is regulated by centromere stiffness and microtubule depolymerases. J Cell Biol. 2010 Mar 8; 188(5):665-79.
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  40. Gatlin JC, Matov A, Danuser G, Mitchison TJ, Salmon ED. Directly probing the mechanical properties of the spindle and its matrix. J Cell Biol. 2010 Feb 22; 188(4):481-9.
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  41. Jaqaman K, Danuser G. Computational image analysis of cellular dynamics: a case study based on particle tracking. Cold Spring Harb Protoc. 2009 Dec; 2009(12):pdb.top65.
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  42. Liu AP, Loerke D, Schmid SL, Danuser G. Global and local regulation of clathrin-coated pit dynamics detected on patterned substrates. Biophys J. 2009 Aug 19; 97(4):1038-47.
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  43. Houghtaling BR, Yang G, Matov A, Danuser G, Kapoor TM. Op18 reveals the contribution of nonkinetochore microtubules to the dynamic organization of the vertebrate meiotic spindle. Proc Natl Acad Sci U S A. 2009 Sep 8; 106(36):15338-43.
    View in: PubMed
  44. Machacek M, Hodgson L, Welch C, Elliott H, Pertz O, Nalbant P, Abell A, Johnson GL, Hahn KM, Danuser G. Coordination of Rho GTPase activities during cell protrusion. Nature. 2009 Sep 3; 461(7260):99-103.
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  45. Lim J, Danuser G. Live cell imaging of F-actin dynamics via Fluorescent Speckle Microscopy (FSM). J Vis Exp. 2009; (30).
    View in: PubMed
  46. Danuser G. Testing the lamella hypothesis: the next steps on the agenda. J Cell Sci. 2009 Jun 15; 122(Pt 12):1959-62.
    View in: PubMed
  47. Mettlen M, Stoeber M, Loerke D, Antonescu CN, Danuser G, Schmid SL. Endocytic accessory proteins are functionally distinguished by their differential effects on the maturation of clathrin-coated pits. Mol Biol Cell. 2009 Jul; 20(14):3251-60.
    View in: PubMed
  48. Loerke D, Mettlen M, Yarar D, Jaqaman K, Jaqaman H, Danuser G, Schmid SL. Cargo and dynamin regulate clathrin-coated pit maturation. PLoS Biol. 2009 Mar 17; 7(3):e57.
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  49. Kumar P, Lyle KS, Gierke S, Matov A, Danuser G, Wittmann T. GSK3beta phosphorylation modulates CLASP-microtubule association and lamella microtubule attachment. J Cell Biol. 2009 Mar 23; 184(6):895-908.
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  50. Gatlin JC, Matov A, Groen AC, Needleman DJ, Maresca TJ, Danuser G, Mitchison TJ, Salmon ED. Spindle fusion requires dynein-mediated sliding of oppositely oriented microtubules. Curr Biol. 2009 Feb 24; 19(4):287-96.
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  51. Gardel ML, Sabass B, Ji L, Danuser G, Schwarz US, Waterman CM. Traction stress in focal adhesions correlates biphasically with actin retrograde flow speed. J Cell Biol. 2008 Dec 15; 183(6):999-1005.
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  52. Ji L, Lim J, Danuser G. Fluctuations of intracellular forces during cell protrusion. Nat Cell Biol. 2008 Dec; 10(12):1393-400.
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  53. Yang G, Cameron LA, Maddox PS, Salmon ED, Danuser G. Regional variation of microtubule flux reveals microtubule organization in the metaphase meiotic spindle. J Cell Biol. 2008 Aug 25; 182(4):631-9.
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  54. Jaqaman K, Loerke D, Mettlen M, Kuwata H, Grinstein S, Schmid SL, Danuser G. Robust single-particle tracking in live-cell time-lapse sequences. Nat Methods. 2008 Aug; 5(8):695-702.
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  55. Schaefer AW, Schoonderwoert VT, Ji L, Mederios N, Danuser G, Forscher P. Coordination of actin filament and microtubule dynamics during neurite outgrowth. Dev Cell. 2008 Jul; 15(1):146-62.
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  56. Burnette DT, Ji L, Schaefer AW, Medeiros NA, Danuser G, Forscher P. Myosin II activity facilitates microtubule bundling in the neuronal growth cone neck. Dev Cell. 2008 Jul; 15(1):163-9.
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  57. Sabouri-Ghomi M, Wu Y, Hahn K, Danuser G. Visualizing and quantifying adhesive signals. Curr Opin Cell Biol. 2008 Oct; 20(5):541-50.
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  58. Dorn JF, Danuser G, Yang G. Computational processing and analysis of dynamic fluorescence image data. Methods Cell Biol. 2008; 85:497-538.
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  59. Burnette DT, Schaefer AW, Ji L, Danuser G, Forscher P. Filopodial actin bundles are not necessary for microtubule advance into the peripheral domain of Aplysia neuronal growth cones. Nat Cell Biol. 2007 Dec; 9(12):1360-9.
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  60. Csucs G, Quirin K, Danuser G. Locomotion of fish epidermal keratocytes on spatially selective adhesion patterns. Cell Motil Cytoskeleton. 2007 Nov; 64(11):856-67.
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  61. Delorme V, Machacek M, DerMardirossian C, Anderson KL, Wittmann T, Hanein D, Waterman-Storer C, Danuser G, Bokoch GM. Cofilin activity downstream of Pak1 regulates cell protrusion efficiency by organizing lamellipodium and lamella actin networks. Dev Cell. 2007 Nov; 13(5):646-62.
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  62. Yang G, Houghtaling BR, Gaetz J, Liu JZ, Danuser G, Kapoor TM. Architectural dynamics of the meiotic spindle revealed by single-fluorophore imaging. Nat Cell Biol. 2007 Nov; 9(11):1233-42.
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  63. Yam PT, Wilson CA, Ji L, Hebert B, Barnhart EL, Dye NA, Wiseman PW, Danuser G, Theriot JA. Actin-myosin network reorganization breaks symmetry at the cell rear to spontaneously initiate polarized cell motility. J Cell Biol. 2007 Sep 24; 178(7):1207-21.
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  64. Soutoglou E, Dorn JF, Sengupta K, Jasin M, Nussenzweig A, Ried T, Danuser G, Misteli T. Positional stability of single double-strand breaks in mammalian cells. Nat Cell Biol. 2007 Jun; 9(6):675-82.
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  65. Jaqaman K, Dorn JF, Marco E, Sorger PK, Danuser G. Phenotypic clustering of yeast mutants based on kinetochore microtubule dynamics. Bioinformatics. 2007 Jul 1; 23(13):1666-73.
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  66. Hu K, Ji L, Applegate KT, Danuser G, Waterman-Storer CM. Differential transmission of actin motion within focal adhesions. Science. 2007 Jan 5; 315(5808):111-5.
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  67. Ji L, Loerke D, Gardel M, Danuser G. Probing intracellular force distributions by high-resolution live cell imaging and inverse dynamics. Methods Cell Biol. 2007; 83:199-235.
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  68. Jaqaman K, Danuser G. Linking data to models: data regression. Nat Rev Mol Cell Biol. 2006 Nov; 7(11):813-9.
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  69. Jaqaman K, Dorn JF, Jelson GS, Tytell JD, Sorger PK, Danuser G. Comparative autoregressive moving average analysis of kinetochore microtubule dynamics in yeast. Biophys J. 2006 Sep 15; 91(6):2312-25.
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  70. Cameron LA, Yang G, Cimini D, Canman JC, Kisurina-Evgenieva O, Khodjakov A, Danuser G, Salmon ED. Kinesin 5-independent poleward flux of kinetochore microtubules in PtK1 cells. J Cell Biol. 2006 Apr 24; 173(2):173-9.
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  71. Danuser G, Waterman-Storer CM. Quantitative fluorescent speckle microscopy of cytoskeleton dynamics. Annu Rev Biophys Biomol Struct. 2006; 35:361-87.
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  72. Machacek M, Danuser G. Morphodynamic profiling of protrusion phenotypes. Biophys J. 2006 Feb 15; 90(4):1439-52.
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  73. Danuser G. Coupling the dynamics of two actin networks--new views on the mechanics of cell protrusion. Biochem Soc Trans. 2005 Dec; 33(Pt 6):1250-3.
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  74. Ji L, Danuser G. Tracking quasi-stationary flow of weak fluorescent signals by adaptive multi-frame correlation. J Microsc. 2005 Dec; 220(Pt 3):150-67.
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  75. de Rooij J, Kerstens A, Danuser G, Schwartz MA, Waterman-Storer CM. Integrin-dependent actomyosin contraction regulates epithelial cell scattering. J Cell Biol. 2005 Oct 10; 171(1):153-64.
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  76. Dorn JF, Jaqaman K, Rines DR, Jelson GS, Sorger PK, Danuser G. Yeast kinetochore microtubule dynamics analyzed by high-resolution three-dimensional microscopy. Biophys J. 2005 Oct; 89(4):2835-54.
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  77. Ponti A, Matov A, Adams M, Gupton S, Waterman-Storer CM, Danuser G. Periodic patterns of actin turnover in lamellipodia and lamellae of migrating epithelial cells analyzed by quantitative Fluorescent Speckle Microscopy. Biophys J. 2005 Nov; 89(5):3456-69.
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  78. Gupton SL, Anderson KL, Kole TP, Fischer RS, Ponti A, Hitchcock-DeGregori SE, Danuser G, Fowler VM, Wirtz D, Hanein D, Waterman-Storer CM. Cell migration without a lamellipodium: translation of actin dynamics into cell movement mediated by tropomyosin. J Cell Biol. 2005 Feb 14; 168(4):619-31.
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  79. Vallotton P, Danuser G, Bohnet S, Meister JJ, Verkhovsky AB. Tracking retrograde flow in keratocytes: news from the front. Mol Biol Cell. 2005 Mar; 16(3):1223-31.
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  80. Adams MC, Matov A, Yarar D, Gupton SL, Danuser G, Waterman-Storer CM. Signal analysis of total internal reflection fluorescent speckle microscopy (TIR-FSM) and wide-field epi-fluorescence FSM of the actin cytoskeleton and focal adhesions in living cells. J Microsc. 2004 Nov; 216(Pt 2):138-52.
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  81. Ponti A, Machacek M, Gupton SL, Waterman-Storer CM, Danuser G. Two distinct actin networks drive the protrusion of migrating cells. Science. 2004 Sep 17; 305(5691):1782-6.
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  82. Vallotton P, Gupton SL, Waterman-Storer CM, Danuser G. Simultaneous mapping of filamentous actin flow and turnover in migrating cells by quantitative fluorescent speckle microscopy. Proc Natl Acad Sci U S A. 2004 Jun 29; 101(26):9660-5.
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  83. Danuser G, Waterman-Storer CM. Quantitative fluorescent speckle microscopy: where it came from and where it is going. J Microsc. 2003 Sep; 211(Pt 3):191-207.
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  84. Thomann D, Dorn J, Sorger PK, Danuser G. Automatic fluorescent tag localization II: Improvement in super-resolution by relative tracking. J Microsc. 2003 Sep; 211(Pt 3):230-48.
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  85. Vallotton P, Ponti A, Waterman-Storer CM, Salmon ED, Danuser G. Recovery, visualization, and analysis of actin and tubulin polymer flow in live cells: a fluorescent speckle microscopy study. Biophys J. 2003 Aug; 85(2):1289-306.
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  86. Müller M, Vörös J, Csúcs G, Walter E, Danuser G, Merkle HP, Spencer ND, Textor M. Surface modification of PLGA microspheres. J Biomed Mater Res A. 2003 Jul 1; 66(1):55-61.
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  87. Berney C, Danuser G. FRET or no FRET: a quantitative comparison. Biophys J. 2003 Jun; 84(6):3992-4010.
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  88. Ponti A, Vallotton P, Salmon WC, Waterman-Storer CM, Danuser G. Computational analysis of F-actin turnover in cortical actin meshworks using fluorescent speckle microscopy. Biophys J. 2003 May; 84(5):3336-52.
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  89. Csucs G, Michel R, Lussi JW, Textor M, Danuser G. Microcontact printing of novel co-polymers in combination with proteins for cell-biological applications. Biomaterials. 2003 May; 24(10):1713-20.
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  90. Scotchford CA, Ball M, Winkelmann M, Vörös J, Csucs C, Brunette DM, Danuser G, Textor M. Chemically patterned, metal-oxide-based surfaces produced by photolithographic techniques for studying protein- and cell-interactions. II: Protein adsorption and early cell interactions. Biomaterials. 2003 Mar; 24(7):1147-58.
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  91. Thomann D, Rines DR, Sorger PK, Danuser G. Automatic fluorescent tag detection in 3D with super-resolution: application to the analysis of chromosome movement. J Microsc. 2002 Oct; 208(Pt 1):49-64.
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  92. Waterman-Storer CM, Danuser G. New directions for fluorescent speckle microscopy. Curr Biol. 2002 Sep 17; 12(18):R633-40.
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  93. Denoth J, Stüssi E, Csucs G, Danuser G. Single muscle fiber contraction is dictated by inter-sarcomere dynamics. J Theor Biol. 2002 May 7; 216(1):101-22.
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  94. Danuser G. Super-resolution microscopy using normal flow decoding and geometric constraints. J Microsc. 2001 Nov; 204(Pt 2):136-49.
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  95. Danuser G, Oldenbourg R. Probing f-actin flow by tracking shape fluctuations of radial bundles in lamellipodia of motile cells. Biophys J. 2000 Jul; 79(1):191-201.
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  96. Danuser G, Tran PT, Salmon ED. Tracking differential interference contrast diffraction line images with nanometre sensitivity. J Microsc. 2000 Apr; 198(Pt 1):34-53.
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  97. Oldenbourg R, Katoh K, Danuser G. Mechanism of lateral movement of filopodia and radial actin bundles across neuronal growth cones. Biophys J. 2000 Mar; 78(3):1176-82.
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  98. Messerli MA, Danuser G, Robinson KR. Pulsatile influxes of H+, K+ and Ca2+ lag growth pulses of Lilium longiflorum pollen tubes. J Cell Sci. 1999 May; 112 ( Pt 10):1497-509.
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