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John R Gilbertson, M.D.

TitleAssociate Professor of Pathology
InstitutionMassachusetts General Hospital
DepartmentPathology
AddressMassachusetts General Hospital
Pathology Service, WRN 202
55 Fruit St
Boston MA 02114
Phone617/643-4255

 Bibliographic 
 selected publications
Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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  1. Lee RE, McClintock DS, Balis UJ, Baron JM, Becich MJ, Beckwith BA, Brodsky VB, Carter AB, Dighe AS, Haghighi M, Hipp JD, Henricks WH, Kim JY, Klepseis VE, Kuo FC, Lane WJ, Levy BP, Onozato ML, Park SL, Sinard JH, Tuthill MJ, Gilbertson JR. Pathology informatics fellowship retreats: The use of interactive scenarios and case studies as pathology informatics teaching tools. J Pathol Inform. 2012; 3:41.
    View in: PubMed
  2. Levy BP, McClintock DS, Lee RE, Lane WJ, Klepeis VE, Baron JM, Onozato ML, Kim J, Brodsky V, Beckwith B, Kuo F, Gilbertson JR. Different tracks for pathology informatics fellowship training: Experiences of and input from trainees in a large multisite fellowship program. J Pathol Inform. 2012; 3:30.
    View in: PubMed
  3. McClintock DS, Levy BP, Lane WJ, Lee RE, Baron JM, Klepeis VE, Onozato ML, Kim J, Dighe AS, Beckwith BA, Kuo F, Black-Schaffer S, Gilbertson JR. A core curriculum for clinical fellowship training in pathology informatics. J Pathol Inform. 2012; 3:31.
    View in: PubMed
  4. Gilbertson JR, McClintock DS, Lee RE, Onozato M, Kuo FC, Beckwith BA, Yagi Y, Dighe AS, Gudewicz TM, Le LP, Wilbur DC, Kim JY, Brodsky VB, Black-Schaffer S. Clinical fellowship training in pathology informatics: A program description. J Pathol Inform. 2012; 3:11.
    View in: PubMed
  5. McClintock DS, Lee RE, Gilbertson JR. Using computerized workflow simulations to assess the feasibility of whole slide imaging full adoption in a high-volume histology laboratory. Anal Cell Pathol (Amst). 2012; 35(1):57-64.
    View in: PubMed
  6. Hipp J, Monaco J, Kunju LP, Cheng J, Yagi Y, Rodriguez-Canales J, Emmert-Buck MR, Hewitt S, Feldman MD, Tomaszewski JE, Toner M, Tompkins RG, Flotte T, Lucas D, Gilbertson JR, Madabhushi A, Balis U. Integration of architectural and cytologic driven image algorithms for prostate adenocarcinoma identification. Anal Cell Pathol (Amst). 2012; 35(4):251-65.
    View in: PubMed
  7. Hipp J, Flotte T, Monaco J, Cheng J, Madabhushi A, Yagi Y, Rodriguez-Canales J, Emmert-Buck M, Dugan MC, Hewitt S, Toner M, Tompkins RG, Lucas D, Gilbertson JR, Balis UJ. Computer aided diagnostic tools aim to empower rather than replace pathologists: Lessons learned from computational chess. J Pathol Inform. 2011; 2:25.
    View in: PubMed
  8. Kim JY, Gudewicz TM, Dighe AS, Gilbertson JR. The pathology informatics curriculum wiki: Harnessing the power of user-generated content. J Pathol Inform. 2010; 1.
    View in: PubMed
  9. Daniel C, GarcĂ­a Rojo M, Bourquard K, Henin D, Schrader T, Della Mea V, Gilbertson J, Beckwith BA. Standards to support information systems integration in anatomic pathology. Arch Pathol Lab Med. 2009 Nov; 133(11):1841-9.
    View in: PubMed
  10. Weinstein RS, Graham AR, Richter LC, Barker GP, Krupinski EA, Lopez AM, Erps KA, Bhattacharyya AK, Yagi Y, Gilbertson JR. Overview of telepathology, virtual microscopy, and whole slide imaging: prospects for the future. Hum Pathol. 2009 Aug; 40(8):1057-69.
    View in: PubMed
  11. Schrader T, Beckwith B, Rojo MG, Gilbertson J, Daniel C. [Anatomic pathology workflow. IHE: modeling based on current developments in HL7 and DICOM]. Pathologe. 2008 Nov; 29 Suppl 2:308-13.
    View in: PubMed
  12. Yagi Y, Gilbertson JR. The importance of optical optimization in whole slide imaging (WSI) and digital pathology imaging. Diagn Pathol. 2008; 3 Suppl 1:S1.
    View in: PubMed
  13. Yagi Y, Gilbertson JR. A relationship between slide quality and image quality in whole slide imaging (WSI). Diagn Pathol. 2008; 3 Suppl 1:S12.
    View in: PubMed
  14. Gilbertson J, Yagi Y. Histology, imaging and new diagnostic work-flows in pathology. Diagn Pathol. 2008; 3 Suppl 1:S14.
    View in: PubMed
  15. Fine JL, Grzybicki DM, Silowash R, Ho J, Gilbertson JR, Anthony L, Wilson R, Parwani AV, Bastacky SI, Epstein JI, Jukic DM. Evaluation of whole slide image immunohistochemistry interpretation in challenging prostate needle biopsies. Hum Pathol. 2008 Apr; 39(4):564-72.
    View in: PubMed
  16. Patel AA, Gilbertson JR, Showe LC, London JW, Ross E, Ochs MF, Carver J, Lazarus A, Parwani AV, Dhir R, Beck JR, Liebman M, Garcia FU, Prichard J, Wilkerson M, Herberman RB, Becich MJ. A novel cross-disciplinary multi-institute approach to translational cancer research: lessons learned from Pennsylvania Cancer Alliance Bioinformatics Consortium (PCABC). Cancer Inform. 2007; 3:255-74.
    View in: PubMed
  17. Patel AA, Gupta D, Seligson D, Hattab EM, Balis UJ, Ulbright TM, Kohane IS, Berman JJ, Gilbertson JR, Dry S, Schirripa O, Yu H, Becich MJ, Parwani AV. Availability and quality of paraffin blocks identified in pathology archives: a multi-institutional study by the Shared Pathology Informatics Network (SPIN). BMC Cancer. 2007; 7:37.
    View in: PubMed
  18. Patel AA, Gilbertson JR, Parwani AV, Dhir R, Datta MW, Gupta R, Berman JJ, Melamed J, Kajdacsy-Balla A, Orenstein J, Becich MJ. An informatics model for tissue banks--lessons learned from the Cooperative Prostate Cancer Tissue Resource. BMC Cancer. 2006; 6:120.
    View in: PubMed
  19. Ma C, Lyons-Weiler M, Liang W, LaFramboise W, Gilbertson JR, Becich MJ, Monzon FA. In vitro transcription amplification and labeling methods contribute to the variability of gene expression profiling with DNA microarrays. J Mol Diagn. 2006 May; 8(2):183-92.
    View in: PubMed
  20. Gilbertson JR, Ho J, Anthony L, Jukic DM, Yagi Y, Parwani AV. Primary histologic diagnosis using automated whole slide imaging: a validation study. BMC Clin Pathol. 2006; 6:4.
    View in: PubMed
  21. Ho J, Parwani AV, Jukic DM, Yagi Y, Anthony L, Gilbertson JR. Use of whole slide imaging in surgical pathology quality assurance: design and pilot validation studies. Hum Pathol. 2006 Mar; 37(3):322-31.
    View in: PubMed
  22. Grzybicki DM, Turcsanyi B, Becich MJ, Gupta D, Gilbertson JR, Raab SS. Database construction for improving patient safety by examining pathology errors. Am J Clin Pathol. 2005 Oct; 124(4):500-9.
    View in: PubMed
  23. Patel AA, Kajdacsy-Balla A, Berman JJ, Bosland M, Datta MW, Dhir R, Gilbertson J, Melamed J, Orenstein J, Tai KF, Becich MJ. The development of common data elements for a multi-institute prostate cancer tissue bank: the Cooperative Prostate Cancer Tissue Resource (CPCTR) experience. BMC Cancer. 2005; 5:108.
    View in: PubMed
  24. Chandran UR, Dhir R, Ma C, Michalopoulos G, Becich M, Gilbertson J. Differences in gene expression in prostate cancer, normal appearing prostate tissue adjacent to cancer and prostate tissue from cancer free organ donors. BMC Cancer. 2005; 5:45.
    View in: PubMed
  25. Yagi Y, Gilbertson JR. Digital imaging in pathology: the case for standardization. J Telemed Telecare. 2005; 11(3):109-16.
    View in: PubMed
  26. Becich MJ, Gilbertson JR, Gupta D, Patel A, Grzybicki DM, Raab SS. Pathology and patient safety: the critical role of pathology informatics in error reduction and quality initiatives. Clin Lab Med. 2004 Dec; 24(4):913-43, vi.
    View in: PubMed
  27. Yagi Y, Ahmed I, Gross W, Becich MJ, Demetris AJ, Wells A, Wiley CA, Michalopoulos GK, Yousem SA, Barnes B, Gilbertson JR. Webcasting pathology department conferences in a geographically distributed medical center. Hum Pathol. 2004 Jul; 35(7):790-7.
    View in: PubMed
  28. Gupta D, Saul M, Gilbertson J. Evaluation of a deidentification (De-Id) software engine to share pathology reports and clinical documents for research. Am J Clin Pathol. 2004 Feb; 121(2):176-86.
    View in: PubMed
  29. Gilbertson JR, Gupta R, Nie Y, Patel AA, Becich MJ. Automated clinical annotation of tissue bank specimens. Stud Health Technol Inform. 2004; 107(Pt 1):607-10.
    View in: PubMed
  30. Li S, Becich MJ, Gilbertson J. Microarray data mining using gene ontology. Stud Health Technol Inform. 2004; 107(Pt 2):778-82.
    View in: PubMed
  31. Mitchell KJ, Becich MJ, Berman JJ, Chapman WW, Gilbertson J, Gupta D, Harrison J, Legowski E, Crowley RS. Implementation and evaluation of a negation tagger in a pipeline-based system for information extract from pathology reports. Stud Health Technol Inform. 2004; 107(Pt 1):663-7.
    View in: PubMed
  32. Zheng L, Wetzel AW, Gilbertson J, Becich MJ. Design and analysis of a content-based pathology image retrieval system. IEEE Trans Inf Technol Biomed. 2003 Dec; 7(4):249-55.
    View in: PubMed
  33. Mitchell KJ, Crowley RS, Gupta D, Gilbertson J. A knowledge-based approach to information extraction from surgical pathology reports. AMIA Annu Symp Proc. 2003; 937.
    View in: PubMed
  34. Landman A, Yagi Y, Gilbertson J, Dawson R, Marchevsky A, Becich MJ. Prototype Web-based continuing medical education using FlashPix images. Proc AMIA Symp. 2000; 462-6.
    View in: PubMed
  35. Dawson R, Gilbertson J, Kim S, Becich M. Pathology imaging on the Web. Extending the role of the pathologist as educator to patients. Clin Lab Med. 1999 Dec; 19(4):849-66, vii.
    View in: PubMed
  36. Horn KD, Sholehvar D, Nine J, Gilbertson J, Hatton C, Richert C, Becich MJ. Continuing medical education on the World Wide Web (WWW). Interactive pathology case studies on the Internet. Arch Pathol Lab Med. 1997 Jun; 121(6):641-5.
    View in: PubMed
  37. Gilbertson J, Mango P, McLinden S, Becich MJ, Triulzi D. The Pittsburgh Reference Laboratory Alliance: a model for laboratory medicine in the 21st century. Am J Clin Pathol. 1997 Apr; 107(4):387-94.
    View in: PubMed
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