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Simon Keith Warfield, PH.D.

TitleProfessor of Radiology
InstitutionChildren's Hospital Boston
DepartmentRadiology
AddressChildrens Hospital
Radiology, Wolbach 215
300 Longwood Ave
Boston MA 02115
Phone617/732-7090
Fax617/730-0635

 Research 
 research resources
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in the eagle-i Network. To update or add resource records, contact
eagle-i@hms.harvard.edu.
Computational Radiology Laboratory (CHB) - Core services (3) and Software (1)

 Bibliographic 
 selected publications
Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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  1. Suinesiaputra A, Cowan BR, Al-Agamy AO, Elattar MA, Ayache N, Fahmy AS, Khalifa AM, Medrano-Gracia P, Jolly MP, Kadish AH, Lee DC, Margeta J, Warfield SK, Young AA. A collaborative resource to build consensus for automated left ventricular segmentation of cardiac MR images. Med Image Anal. 2014 Jan; 18(1):50-62.
    View in: PubMed
  2. Liszewski MC, Hersman FW, Altes TA, Ohno Y, Ciet P, Warfield SK, Lee EY. Magnetic resonance imaging of pediatric lung parenchyma, airways, vasculature, ventilation, and perfusion: state of the art. Radiol Clin North Am. 2013 Jul; 51(4):555-82.
    View in: PubMed
  3. Hammond DK, Scherrer B, Warfield SK. Cortical Graph Smoothing: A Novel Method for Exploiting DWI-Derived Anatomical Brain Connectivity to Improve EEG Source Estimation. IEEE Trans Med Imaging. 2013 Oct; 32(10):1952-63.
    View in: PubMed
  4. Taimouri V, Akhondi-Asl A, Tomas-Fernandez X, Peters JM, Prabhu SP, Poduri A, Takeoka M, Loddenkemper T, Bergin AM, Harini C, Madsen JR, Warfield SK. Electrode localization for planning surgical resection of the epileptogenic zone in pediatric epilepsy. Int J Comput Assist Radiol Surg. 2014 Jan; 9(1):91-105.
    View in: PubMed
  5. Mostayed A, Garlapati RR, Joldes GR, Wittek A, Roy A, Kikinis R, Warfield SK, Miller K. Biomechanical Model as a Registration Tool for Image-Guided Neurosurgery: Evaluation Against BSpline Registration. Ann Biomed Eng. 2013 Nov; 41(11):2409-25.
    View in: PubMed
  6. Akhondi-Asl A, Warfield SK. Simultaneous truth and performance level estimation through fusion of probabilistic segmentations. IEEE Trans Med Imaging. 2013 Oct; 32(10):1840-52.
    View in: PubMed
  7. Wintermark P, Hansen A, Warfield SK, Dukhovny D, Soul JS. Near-infrared spectroscopy versus magnetic resonance imaging to study brain perfusion in newborns with hypoxic-ischemic encephalopathy treated with hypothermia. Neuroimage. 2014 Jan 15; 85 Pt 1:287-93.
    View in: PubMed
  8. Peters JM, Taquet M, Vega C, Jeste SS, Fernández IS, Tan J, Nelson CA, Sahin M, Warfield SK. Brain functional networks in syndromic and non-syndromic autism: a graph theoretical study of EEG connectivity. BMC Med. 2013; 11:54.
    View in: PubMed
  9. McAnulty G, Duffy FH, Kosta S, Weisenfeld NI, Warfield SK, Butler SC, Alidoost M, Bernstein JH, Robertson R, Zurakowski D, Als H. School-age effects of the newborn individualized developmental care and assessment program for preterm infants with intrauterine growth restriction: preliminary findings. BMC Pediatr. 2013; 13:25.
    View in: PubMed
  10. Weisenfeld NI, Peters JM, Tsai PT, Prabhu SP, Dies KA, Sahin M, Warfield SK. A magnetic resonance imaging study of cerebellar volume in tuberous sclerosis complex. Pediatr Neurol. 2013 Feb; 48(2):105-10.
    View in: PubMed
  11. Thompson DK, Adamson C, Roberts G, Faggian N, Wood SJ, Warfield SK, Doyle LW, Anderson PJ, Egan GF, Inder TE. Hippocampal shape variations at term equivalent age in very preterm infants compared with term controls: Perinatal predictors and functional significance at age 7. Neuroimage. 2013 Apr 15; 70:278-87.
    View in: PubMed
  12. Freiman M, Perez-Rossello JM, Callahan MJ, Voss SD, Ecklund K, Mulkern RV, Warfield SK. Reliable estimation of incoherent motion parametric maps from diffusion-weighted MRI using fusion bootstrap moves. Med Image Anal. 2013 Apr; 17(3):325-36.
    View in: PubMed
  13. Benjamin CF, Singh JM, Prabhu SP, Warfield SK. Optimization of tractography of the optic radiations. Hum Brain Mapp. 2014 Feb; 35(2):683-97.
    View in: PubMed
  14. Scherrer B, Warfield SK. Parametric representation of multiple white matter fascicles from cube and sphere diffusion MRI. PLoS One. 2012; 7(11):e48232.
    View in: PubMed
  15. Clouchoux C, du Plessis AJ, Bouyssi-Kobar M, Tworetzky W, McElhinney DB, Brown DW, Gholipour A, Kudelski D, Warfield SK, McCarter RJ, Robertson RL, Evans AC, Newburger JW, Limperopoulos C. Delayed cortical development in fetuses with complex congenital heart disease. Cereb Cortex. 2013 Dec; 23(12):2932-43.
    View in: PubMed
  16. Freiman M, Perez-Rossello JM, Callahan MJ, Bittman M, Mulkern RV, Bousvaros A, Warfield SK. Characterization of fast and slow diffusion from diffusion-weighted MRI of pediatric Crohn's disease. J Magn Reson Imaging. 2013 Jan; 37(1):156-63.
    View in: PubMed
  17. Freiman M, Voss SD, Mulkern RV, Perez-Rossello JM, Callahan MJ, Warfield SK. In vivo assessment of optimal b-value range for perfusion-insensitive apparent diffusion coefficient imaging. Med Phys. 2012 Aug; 39(8):4832-9.
    View in: PubMed
  18. Scherrer B, Gholipour A, Warfield SK. Super-resolution reconstruction to increase the spatial resolution of diffusion weighted images from orthogonal anisotropic acquisitions. Med Image Anal. 2012 Oct; 16(7):1465-76.
    View in: PubMed
  19. Lewis WW, Sahin M, Scherrer B, Peters JM, Suarez RO, Vogel-Farley VK, Jeste SS, Gregas MC, Prabhu SP, Nelson CA, Warfield SK. Impaired language pathways in tuberous sclerosis complex patients with autism spectrum disorders. Cereb Cortex. 2013 Jul; 23(7):1526-32.
    View in: PubMed
  20. Hyde DE, Duffy FH, Warfield SK. Anisotropic partial volume CSF modeling for EEG source localization. Neuroimage. 2012 Sep; 62(3):2161-70.
    View in: PubMed
  21. Commowick O, Akhondi-Asl A, Warfield SK. Estimating a reference standard segmentation with spatially varying performance parameters: local MAP STAPLE. IEEE Trans Med Imaging. 2012 Aug; 31(8):1593-606.
    View in: PubMed
  22. Thompson DK, Ahmadzai ZM, Wood SJ, Inder TE, Warfield SK, Doyle LW, Egan GF. Optimizing hippocampal segmentation in infants utilizing MRI post-acquisition processing. Neuroinformatics. 2012 Apr; 10(2):173-80.
    View in: PubMed
  23. Gholipour A, Akhondi-Asl A, Estroff JA, Warfield SK. Multi-atlas multi-shape segmentation of fetal brain MRI for volumetric and morphometric analysis of ventriculomegaly. Neuroimage. 2012 Apr 15; 60(3):1819-31.
    View in: PubMed
  24. Als H, Duffy FH, McAnulty G, Butler SC, Lightbody L, Kosta S, Weisenfeld NI, Robertson R, Parad RB, Ringer SA, Blickman JG, Zurakowski D, Warfield SK. NIDCAP improves brain function and structure in preterm infants with severe intrauterine growth restriction. J Perinatol. 2012 Oct; 32(10):797-803.
    View in: PubMed
  25. Vigneron LM, Noels L, Warfield SK, Verly JG, Robe PA. Serial FEM/XFEM-Based Update of Preoperative Brain Images Using Intraoperative MRI. Int J Biomed Imaging. 2012; 2012:872783.
    View in: PubMed
  26. Taquet M, Scherrer B, Commowick O, Peters J, Sahin M, Macq B, Warfield SK. Registration and analysis of white matter group differences with a multi-fiber model. Med Image Comput Comput Assist Interv. 2012; 15(Pt 3):313-20.
    View in: PubMed
  27. Freiman M, Voss SD, Mulkern RV, Perez-Rossello JM, Callahan MJ, Warfield SK. Reliable assessment of perfusivity and diffusivity from diffusion imaging of the body. Med Image Comput Comput Assist Interv. 2012; 15(Pt 1):1-9.
    View in: PubMed
  28. Akhondi-Asl A, Warfield SK. Estimation of the prior distribution of ground truth in the STAPLE algorithm: an empirical Bayesian approach. Med Image Comput Comput Assist Interv. 2012; 15(Pt 1):593-600.
    View in: PubMed
  29. Peters JM, Sahin M, Vogel-Farley VK, Jeste SS, Nelson CA, Gregas MC, Prabhu SP, Scherrer B, Warfield SK. Loss of white matter microstructural integrity is associated with adverse neurological outcome in tuberous sclerosis complex. Acad Radiol. 2012 Jan; 19(1):17-25.
    View in: PubMed
  30. Thompson DK, Inder TE, Faggian N, Warfield SK, Anderson PJ, Doyle LW, Egan GF. Corpus callosum alterations in very preterm infants: perinatal correlates and 2 year neurodevelopmental outcomes. Neuroimage. 2012 Feb 15; 59(4):3571-81.
    View in: PubMed
  31. Suarez RO, Commowick O, Prabhu SP, Warfield SK. Automated delineation of white matter fiber tracts with a multiple region-of-interest approach. Neuroimage. 2012 Feb 15; 59(4):3690-700.
    View in: PubMed
  32. Wintermark P, Warfield SK. New insights in perinatal arterial ischemic stroke by assessing brain perfusion. Transl Stroke Res. 2012 Jun; 3(2):255-62.
    View in: PubMed
  33. Wintermark P, Hansen A, Gregas MC, Soul J, Labrecque M, Robertson RL, Warfield SK. Brain perfusion in asphyxiated newborns treated with therapeutic hypothermia. AJNR Am J Neuroradiol. 2011 Dec; 32(11):2023-9.
    View in: PubMed
  34. Clouchoux C, Kudelski D, Gholipour A, Warfield SK, Viseur S, Bouyssi-Kobar M, Mari JL, Evans AC, du Plessis AJ, Limperopoulos C. Quantitative in vivo MRI measurement of cortical development in the fetus. Brain Struct Funct. 2012 Jan; 217(1):127-39.
    View in: PubMed
  35. Akselrod-Ballin A, Bock D, Reid RC, Warfield SK. Accelerating image registration with the Johnson-Lindenstrauss lemma: application to imaging 3-D neural ultrastructure with electron microscopy. IEEE Trans Med Imaging. 2011 Jul; 30(7):1427-38.
    View in: PubMed
  36. Hoyte L, Ye W, Brubaker L, Fielding JR, Lockhart ME, Heilbrun ME, Brown MB, Warfield SK. Segmentations of MRI images of the female pelvic floor: a study of inter- and intra-reader reliability. J Magn Reson Imaging. 2011 Mar; 33(3):684-91.
    View in: PubMed
  37. Vigneron LM, Warfield SK, Robe PA, Verly JG. 3D XFEM-based modeling of retraction for preoperative image update. Comput Aided Surg. 2011; 16(3):121-34.
    View in: PubMed
  38. Gholipour A, Kehtarnavaz N, Scherrer B, Warfield SK. On the accuracy of unwarping techniques for the correction of susceptibility-induced geometric distortion in magnetic resonance Echo-planar images. Conf Proc IEEE Eng Med Biol Soc. 2011; 2011:6997-7000.
    View in: PubMed
  39. Taquet M, Macq B, Warfield SK. Spatially adaptive log-euclidean polyaffine registration based on sparse matches. Med Image Comput Comput Assist Interv. 2011; 14(Pt 2):590-7.
    View in: PubMed
  40. Freiman M, Voss SD, Mulkern RV, Perez-Rossello JM, Warfield SK. Quantitative body DW-MRI biomarkers uncertainty estimation using unscented wild-bootstrap. Med Image Comput Comput Assist Interv. 2011; 14(Pt 2):74-81.
    View in: PubMed
  41. Weisenfeld NI, Warfield SK. Learning likelihoods for labeling (L3): a general multi-classifier segmentation algorithm. Med Image Comput Comput Assist Interv. 2011; 14(Pt 3):322-9.
    View in: PubMed
  42. Gholipour A, Polak M, van der Kouwe A, Nevo E, Warfield SK. Motion-robust MRI through real-time motion tracking and retrospective super-resolution volume reconstruction. Conf Proc IEEE Eng Med Biol Soc. 2011; 2011:5722-5.
    View in: PubMed
  43. Scherrer B, Gholipour A, Warfield SK. Super-resolution in diffusion-weighted imaging. Med Image Comput Comput Assist Interv. 2011; 14(Pt 2):124-32.
    View in: PubMed
  44. Thompson DK, Inder TE, Faggian N, Johnston L, Warfield SK, Anderson PJ, Doyle LW, Egan GF. Characterization of the corpus callosum in very preterm and full-term infants utilizing MRI. Neuroimage. 2011 Mar 15; 55(2):479-90.
    View in: PubMed
  45. Wittek A, Joldes G, Couton M, Warfield SK, Miller K. Patient-specific non-linear finite element modelling for predicting soft organ deformation in real-time: application to non-rigid neuroimage registration. Prog Biophys Mol Biol. 2010 Dec; 103(2-3):292-303.
    View in: PubMed
  46. Wintermark P, Labrecque M, Warfield SK, DeHart S, Hansen A. Can induced hypothermia be assured during brain MRI in neonates with hypoxic-ischemic encephalopathy? Pediatr Radiol. 2010 Dec; 40(12):1950-4.
    View in: PubMed
  47. Wintermark P, Hansen A, Soul J, Labrecque M, Robertson RL, Warfield SK. Early versus late MRI in asphyxiated newborns treated with hypothermia. Arch Dis Child Fetal Neonatal Ed. 2011 Jan; 96(1):F36-44.
    View in: PubMed
  48. Gholipour A, Estroff JA, Barnewolt CE, Connolly SA, Warfield SK. Fetal brain volumetry through MRI volumetric reconstruction and segmentation. Int J Comput Assist Radiol Surg. 2011 May; 6(3):329-39.
    View in: PubMed
  49. Gholipour A, Estroff JA, Warfield SK. Robust super-resolution volume reconstruction from slice acquisitions: application to fetal brain MRI. IEEE Trans Med Imaging. 2010 Oct; 29(10):1739-58.
    View in: PubMed
  50. Lee JW, Wen PY, Hurwitz S, Black P, Kesari S, Drappatz J, Golby AJ, Wells WM, Warfield SK, Kikinis R, Bromfield EB. Morphological characteristics of brain tumors causing seizures. Arch Neurol. 2010 Mar; 67(3):336-42.
    View in: PubMed
  51. Commowick O, Warfield SK. Estimation of inferential uncertainty in assessing expert segmentation performance from STAPLE. IEEE Trans Med Imaging. 2010 Mar; 29(3):771-80.
    View in: PubMed
  52. Krishnan ML, Commowick O, Jeste SS, Weisenfeld N, Hans A, Gregas MC, Sahin M, Warfield SK. Diffusion features of white matter in tuberous sclerosis with tractography. Pediatr Neurol. 2010 Feb; 42(2):101-6.
    View in: PubMed
  53. Commowick O, Warfield SK. Incorporating priors on expert performance parameters for segmentation validation and label fusion: a maximum a posteriori STAPLE. Med Image Comput Comput Assist Interv. 2010; 13(Pt 3):25-32.
    View in: PubMed
  54. Gholipour A, Estroff JA, Sahin M, Prabhu SP, Warfield SK. Maximum a posteriori estimation of isotropic high-resolution volumetric MRI from orthogonal thick-slice scans. Med Image Comput Comput Assist Interv. 2010; 13(Pt 2):109-16.
    View in: PubMed
  55. Benders MJ, Groenendaal F, van Bel F, Ha Vinh R, Dubois J, Lazeyras F, Warfield SK, Hüppi PS, de Vries LS. Brain development of the preterm neonate after neonatal hydrocortisone treatment for chronic lung disease. Pediatr Res. 2009 Nov; 66(5):555-9.
    View in: PubMed
  56. Wintermark P, Boyd T, Parast MM, Van Marter LJ, Warfield SK, Robertson RL, Ringer SA. Fetal placental thrombosis and neonatal implications. Am J Perinatol. 2010 Mar; 27(3):251-6.
    View in: PubMed
  57. Schaap M, Metz CT, van Walsum T, van der Giessen AG, Weustink AC, Mollet NR, Bauer C, Bogunovic H, Castro C, Deng X, Dikici E, O'Donnell T, Frenay M, Friman O, Hernández Hoyos M, Kitslaar PH, Krissian K, Kühnel C, Luengo-Oroz MA, Orkisz M, Smedby O, Styner M, Szymczak A, Tek H, Wang C, Warfield SK, Zambal S, Zhang Y, Krestin GP, Niessen WJ. Standardized evaluation methodology and reference database for evaluating coronary artery centerline extraction algorithms. Med Image Anal. 2009 Oct; 13(5):701-14.
    View in: PubMed
  58. Fripp J, Crozier S, Warfield SK, Ourselin S. Automatic segmentation and quantitative analysis of the articular cartilages from magnetic resonance images of the knee. IEEE Trans Med Imaging. 2010 Jan; 29(1):55-64.
    View in: PubMed
  59. Weisenfeld NI, Warfield SK. Automatic segmentation of newborn brain MRI. Neuroimage. 2009 Aug 15; 47(2):564-72.
    View in: PubMed
  60. Thompson DK, Wood SJ, Doyle LW, Warfield SK, Egan GF, Inder TE. MR-determined hippocampal asymmetry in full-term and preterm neonates. Hippocampus. 2009 Feb; 19(2):118-23.
    View in: PubMed
  61. Commowick O, Warfield SK. Estimation of inferential uncertainty in assessing expert segmentation performance from STAPLE. Inf Process Med Imaging. 2009; 21:701-12.
    View in: PubMed
  62. Joldes GR, Wittek A, Couton M, Warfield SK, Miller K. Real-time prediction of brain shift using nonlinear finite element algorithms. Med Image Comput Comput Assist Interv. 2009; 12(Pt 2):300-7.
    View in: PubMed
  63. Commowick O, Warfield SK. A Continuous STAPLE for Scalar, Vector and Tensor Images: An Application to DTI Analysis. IEEE TMI. 2009.
  64. Akselrod-Ballin A, Bock D, Reid RC, Warfield SK. Accelerating feature based registration using the Johnson-Lindenstrauss Lemma. Med Image Comput Comput Assist Interv. 2009; 12(Pt 1):632-9.
    View in: PubMed
  65. Commowick O, Warfield SK, Malandain G. Using Frankenstein's creature paradigm to build a patient specific atlas. Med Image Comput Comput Assist Interv. 2009; 12(Pt 2):993-1000.
    View in: PubMed
  66. Vigneron LM, Duflot MP, Robe PA, Warfield SK, Verly JG. 2D XFEM-based modeling of retraction and successive resections for preoperative image update. Comput Aided Surg. 2009; 14(1-3):1-20.
    View in: PubMed
  67. De Craene MS, Macq B, Marquesc F, Salembierc P, Warfield SK. Unbiased Group-wise Alignment by Iterative Central Tendency Estimation. Math. Model. Nat. Phenom. 2008; 3(6):2-32.
  68. Commowick O, Warfield SK. A continuous STAPLE for scalar, vector, and tensor images: an application to DTI analysis. IEEE Trans Med Imaging. 2009 Jun; 28(6):838-46.
    View in: PubMed
  69. Rullmann M, Anwander A, Dannhauer M, Warfield SK, Duffy FH, Wolters CH. EEG source analysis of epileptiform activity using a 1 mm anisotropic hexahedra finite element head model. Neuroimage. 2009 Jan 15; 44(2):399-410.
    View in: PubMed
  70. Spiclin Z, Hans A, Duffy FH, Warfield SK, Likar B, Pernus F. . EEG to MRI registration based on global and local similarities of MRI intensity distributions. Med Image Comput Comput Assist Interv Int Conf Med Image Comput Comput Assist Interv. 2008; 11(Pt 1):762-70.
  71. Commowick O, Fillard P, Clatz O, Warfield SK. Detection of DTI white matter abnormalities in multiple sclerosis patients. Med Image Comput Comput Assist Interv Int Conf Med Image Comput Comput Assist Interv. 2008; 11(Pt 1):975-82.
  72. Warfield SK, Zou KH, Wells WM. Validation of image segmentation by estimating rater bias and variance. Philos Transact A Math Phys Eng Sci. 2008 Jul 13; 366(1874):2361-75.
    View in: PubMed
  73. Dubois J, Benders M, Borradori-Tolsa C, Cachia A, Lazeyras F, Ha-Vinh Leuchter R, Sizonenko SV, Warfield SK, Mangin JF, Hüppi PS. Primary cortical folding in the human newborn: an early marker of later functional development. Brain. 2008 Aug; 131(Pt 8):2028-41.
    View in: PubMed
  74. Hoyte L, Damaser MS, Warfield SK, Chukkapalli G, Majumdar A, Choi DJ, Trivedi A, Krysl P. Quantity and distribution of levator ani stretch during simulated vaginal childbirth. Am J Obstet Gynecol. 2008 Aug; 199(2):198.e1-5.
    View in: PubMed
  75. Wisco JJ, Rosene DL, Killiany RJ, Moss MB, Warfield SK, Egorova S, Wu Y, Liptak Z, Warner J, Guttmann CR. A rhesus monkey reference label atlas for template driven segmentation. J Med Primatol. 2008 Oct; 37(5):250-60.
    View in: PubMed
  76. Thompson DK, Wood SJ, Doyle LW, Warfield SK, Lodygensky GA, Anderson PJ, Egan GF, Inder TE. Neonate hippocampal volumes: prematurity, perinatal predictors, and 2-year outcome. Ann Neurol. 2008 May; 63(5):642-51.
    View in: PubMed
  77. Rivkin MJ, Davis PE, Lemaster JL, Cabral HJ, Warfield SK, Mulkern RV, Robson CD, Rose-Jacobs R, Frank DA. Volumetric MRI study of brain in children with intrauterine exposure to cocaine, alcohol, tobacco, and marijuana. Pediatrics. 2008 Apr; 121(4):741-50.
    View in: PubMed
  78. Lodygensky GA, Seghier ML, Warfield SK, Tolsa CB, Sizonenko S, Lazeyras F, Hüppi PS. Intrauterine growth restriction affects the preterm infant's hippocampus. Pediatr Res. 2008 Apr; 63(4):438-43.
    View in: PubMed
  79. Archip N, Clatz O, Whalen S, Dimaio SP, Black PM, Jolesz FA, Golby A, Warfield SK. Compensation of geometric distortion effects on intraoperative magnetic resonance imaging for enhanced visualization in image-guided neurosurgery. Neurosurgery. 2008 Mar; 62(3 Suppl 1):209-15; discussion 215-6.
    View in: PubMed
  80. Commowick O, Fillard P, Clatz O, Warfield SK. Detection of DTI white matter abnormalities in multiple sclerosis patients. Med Image Comput Comput Assist Interv. 2008; 11(Pt 1):975-82.
    View in: PubMed
  81. Spiclin Z, Hans A, Duffy FH, Warfield SK, Likar B, Pernus F. EEG to MRI registration based on global and local similarities of MRI intensity distributions. Med Image Comput Comput Assist Interv. 2008; 11(Pt 1):762-70.
    View in: PubMed
  82. Comparison of the deformations of brain tissues caused by tumor in seizure and non-seizure patients. 2008.
  83. Downing KT, Hoyte LP, Warfield SK, Weidner AC. Racial differences in pelvic floor muscle thickness in asymptomatic nulliparas as seen on magnetic resonance imaging-based three-dimensional color thickness mapping. Am J Obstet Gynecol. 2007 Dec; 197(6):625.e1-4.
    View in: PubMed
  84. Maddah M, Grimson WE, Warfield SK, Wells WM. A unified framework for clustering and quantitative analysis of white matter fiber tracts. Med Image Anal. 2008 Apr; 12(2):191-202.
    View in: PubMed
  85. Archip N, Jolesz FA, Warfield SK. A validation framework for brain tumor segmentation. Acad Radiol. 2007 Oct; 14(10):1242-51.
    View in: PubMed
  86. Dauguet J, Peled S, Berezovskii V, Delzescaux T, Warfield SK, Born R, Westin CF. Comparison of fiber tracts derived from in-vivo DTI tractography with 3D histological neural tract tracer reconstruction on a macaque brain. Neuroimage. 2007 Aug 15; 37(2):530-8.
    View in: PubMed
  87. Wisco JJ, Killiany RJ, Guttmann CR, Warfield SK, Moss MB, Rosene DL. An MRI study of age-related white and gray matter volume changes in the rhesus monkey. Neurobiol Aging. 2008 Oct; 29(10):1563-75.
    View in: PubMed
  88. Mewes AU, Zöllei L, Hüppi PS, Als H, McAnulty GB, Inder TE, Wells WM, Warfield SK. Displacement of brain regions in preterm infants with non-synostotic dolichocephaly investigated by MRI. Neuroimage. 2007 Jul 15; 36(4):1074-85.
    View in: PubMed
  89. Fripp J, Crozier S, Warfield SK, Ourselin S. Automatic segmentation of the bone and extraction of the bone-cartilage interface from magnetic resonance images of the knee. Phys Med Biol. 2007 Mar 21; 52(6):1617-31.
    View in: PubMed
  90. Dauguet J, Bock D, Reid RC, Warfield SK. Alignment of large image series using cubic B-splines tessellation: application to transmission electron microscopy data. Med Image Comput Comput Assist Interv. 2007; 10(Pt 2):710-7.
    View in: PubMed
  91. Automatic Segmentation of Articular Cartilage in Magnetic Resonance Images of the Knee. 2007.
  92. Grid-Enabled Software Environment for Enhanced Dynamic Data-Driven Visualization and Navigation During Image-Guided Neurosurgery. 2007.
  93. Probabilistic Clustering and Quantitative Analysis of White Matter Fiber Tracts. 2007.
  94. Alignment of Large Image Series Using Cubic B-Splines Tessellation: Application to Transmission Electron Microscopy Data. 2007.
  95. Non-rigid Registration of Pre-procedural MR Images with Intra-procedural Unenhanced CT Images for Improved Targeting of Tumors During Liver Radiofrequency Ablations. 2007.
  96. Fripp J, Crozier S, Warfield SK, Ourselin S. Automatic segmentation of articular cartilage in magnetic resonance images of the knee. Med Image Comput Comput Assist Interv. 2007; 10(Pt 2):186-94.
    View in: PubMed
  97. Archip N, Tatli S, Morrison P, Jolesz F, Warfield SK, Silverman S. Non-rigid registration of pre-procedural MR images with intra-procedural unenhanced CT images for improved targeting of tumors during liver radiofrequency ablations. Med Image Comput Comput Assist Interv. 2007; 10(Pt 2):969-77.
    View in: PubMed
  98. Maddah M, Wells WM, Warfield SK, Westin CF, Grimson WE. Probabilistic clustering and quantitative analysis of white matter fiber tracts. Inf Process Med Imaging. 2007; 20:372-83.
    View in: PubMed
  99. Archip N, Clatz O, Whalen S, Kacher D, Fedorov A, Kot A, Chrisochoides N, Jolesz F, Golby A, Black PM, Warfield SK. Non-rigid alignment of pre-operative MRI, fMRI, and DT-MRI with intra-operative MRI for enhanced visualization and navigation in image-guided neurosurgery. Neuroimage. 2007 Apr 1; 35(2):609-24.
    View in: PubMed
  100. Alayón S, Robertson R, Warfield SK, Ruiz-Alzola J. A fuzzy system for helping medical diagnosis of malformations of cortical development. J Biomed Inform. 2007 Jun; 40(3):221-35.
    View in: PubMed
  101. Jannin P, Krupinski E, Warfield S. Validation in medical image processing. IEEE Trans Med Imaging. 2006 Nov; 25(11):1405-9.
    View in: PubMed
  102. Thompson DK, Warfield SK, Carlin JB, Pavlovic M, Wang HX, Bear M, Kean MJ, Doyle LW, Egan GF, Inder TE. Perinatal risk factors altering regional brain structure in the preterm infant. Brain. 2007 Mar; 130(Pt 3):667-77.
    View in: PubMed
  103. Dimaio SP, Archip N, Hata N, Talos IF, Warfield SK, Majumdar A, Mcdannold N, Hynynen K, Morrison PR, Wells WM, Kacher DF, Ellis RE, Golby AJ, Black PM, Jolesz FA, Kikinis R. Image-guided neurosurgery at Brigham and Women's Hospital. IEEE Eng Med Biol Mag. 2006 Sep-Oct; 25(5):67-73.
    View in: PubMed
  104. Shah DK, Guinane C, August P, Austin NC, Woodward LJ, Thompson DK, Warfield SK, Clemett R, Inder TE. Reduced occipital regional volumes at term predict impaired visual function in early childhood in very low birth weight infants. Invest Ophthalmol Vis Sci. 2006 Aug; 47(8):3366-73.
    View in: PubMed
  105. Goldberg-Zimring D, Warfield SK. Novel image processing techniques to better understand white matter disruption in multiple sclerosis. Autoimmun Rev. 2006 Oct; 5(8):544-8.
    View in: PubMed
  106. Mewes AU, Hüppi PS, Als H, Rybicki FJ, Inder TE, McAnulty GB, Mulkern RV, Robertson RL, Rivkin MJ, Warfield SK. Regional brain development in serial magnetic resonance imaging of low-risk preterm infants. Pediatrics. 2006 Jul; 118(1):23-33.
    View in: PubMed
  107. Wu Y, Warfield SK, Tan IL, Wells WM, Meier DS, van Schijndel RA, Barkhof F, Guttmann CR. Automated segmentation of multiple sclerosis lesion subtypes with multichannel MRI. Neuroimage. 2006 Sep; 32(3):1205-15.
    View in: PubMed
  108. Shah DK, Anderson PJ, Carlin JB, Pavlovic M, Howard K, Thompson DK, Warfield SK, Inder TE. Reduction in cerebellar volumes in preterm infants: relationship to white matter injury and neurodevelopment at two years of age. Pediatr Res. 2006 Jul; 60(1):97-102.
    View in: PubMed
  109. Wittek A, Miller K, Kikinis R, Warfield SK. Patient-specific model of brain deformation: application to medical image registration. J Biomech. 2007; 40(4):919-29.
    View in: PubMed
  110. Zacharia A, Zimine S, Lovblad KO, Warfield S, Thoeny H, Ozdoba C, Bossi E, Kreis R, Boesch C, Schroth G, Hüppi PS. Early assessment of brain maturation by MR imaging segmentation in neonates and premature infants. AJNR Am J Neuroradiol. 2006 May; 27(5):972-7.
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  111. Warfield SK, Zou KH, Wells WM. Validation of image segmentation by estimating rater bias and variance. Med Image Comput Comput Assist Interv. 2006; 9(Pt 2):839-47.
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  112. Segmentation of newborn brain MRI. 2006.
  113. Validation of Image Segmentation by Estimating Rater Bias and Variance. 2006.
  114. Automatic Segmentation of the Knee Bones using 3D Active Shape Models. 2006.
  115. Statistical modeling and EM clustering of white matter fiber tracts. 2006.
  116. Imaging and visual analysis - Toward real-time image guided neurosurgery using distributed and grid computing. 2006.
  117. Image-guided neurosurgery at Brigham and Women's Hospital. 2006.
  118. Weisenfeld NI, Mewes AU, Warfield SK. Highly accurate segmentation of brain tissue and subcortical gray matter from newborn MRI. Med Image Comput Comput Assist Interv. 2006; 9(Pt 1):199-206.
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  119. Dauguet J, Peled S, Berezovskii V, Delzescaux T, Warfield SK, Born R, Westin CF. 3D histological reconstruction of fiber tracts and direct comparison with diffusion tensor MRI tractography. Med Image Comput Comput Assist Interv. 2006; 9(Pt 1):109-16.
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  120. 3D Histological Reconstruction of Fiber Tracts and Direct Comparison with Diffusion Tensor MRI Tractography. 2006.
  121. An evaluation of three approaches to tetrahedral mesh generation for deformable registration of brain MR images. 2006.
  122. On-Demand High Performance Computing: Image Guided Neuro-Surgery Feasibility Study. 2006.
  123. Highly Accurate Segmentation of Brain Tissue and Subcortical Gray Matter from Newborn MRI. 2006.
  124. du Bois d'Aische A, Craene MD, Geets X, Gregoire V, Macq B, Warfield SK. Efficient multi-modal dense field non-rigid registration: alignment of histological and section images. Med Image Anal. 2005 Dec; 9(6):538-46.
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  125. Zou KH, Greve DN, Wang M, Pieper SD, Warfield SK, White NS, Manandhar S, Brown GG, Vangel MG, Kikinis R, Wells WM. Reproducibility of functional MR imaging: preliminary results of prospective multi-institutional study performed by Biomedical Informatics Research Network. Radiology. 2005 Dec; 237(3):781-9.
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  126. Clatz O, Delingette H, Talos IF, Golby AJ, Kikinis R, Jolesz FA, Ayache N, Warfield SK. Robust nonrigid registration to capture brain shift from intraoperative MRI. IEEE Trans Med Imaging. 2005 Nov; 24(11):1417-27.
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  127. Limperopoulos C, Soul JS, Haidar H, Huppi PS, Bassan H, Warfield SK, Robertson RL, Moore M, Akins P, Volpe JJ, du Plessis AJ. Impaired trophic interactions between the cerebellum and the cerebrum among preterm infants. Pediatrics. 2005 Oct; 116(4):844-50.
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  128. Tsai A, Wells WM, Warfield SK, Willsky AS. An EM algorithm for shape classification based on level sets. Med Image Anal. 2005 Oct; 9(5):491-502.
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  129. Clatz O, Sermesant M, Bondiau PY, Delingette H, Warfield SK, Malandain G, Ayache N. Realistic simulation of the 3-D growth of brain tumors in MR images coupling diffusion with biomechanical deformation. IEEE Trans Med Imaging. 2005 Oct; 24(10):1334-46.
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  130. Haidar H, Warfield SK, Soul JS. Talairach-based parcellation of neonatal brain magnetic resonance imaging data: validation of a new approach. J Neuroimaging. 2005 Oct; 15(4):305-14.
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  131. Wolfson L, Wei X, Hall CB, Panzer V, Wakefield D, Benson RR, Schmidt JA, Warfield SK, Guttmann CR. Accrual of MRI white matter abnormalities in elderly with normal and impaired mobility. J Neurol Sci. 2005 May 15; 232(1-2):23-7.
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  132. Zou KH, Tuncali K, Warfield SK, Zentai CP, Worku D, Morrison PR, Silverman SG. Three-dimensional assessment of MR imaging-guided percutaneous cryotherapy using multi-performer repeated segmentations: the value of supervised learning. Acad Radiol. 2005 Apr; 12(4):444-50.
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  133. Verhey JF, Wisser J, Warfield SK, Rexilius J, Kikinis R. Non-rigid registration of a 3D ultrasound and a MR image data set of the female pelvic floor using a biomechanical model. Biomed Eng Online. 2005; 4(1):19.
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  134. Limperopoulos C, Soul JS, Gauvreau K, Huppi PS, Warfield SK, Bassan H, Robertson RL, Volpe JJ, du Plessis AJ. Late gestation cerebellar growth is rapid and impeded by premature birth. Pediatrics. 2005 Mar; 115(3):688-95.
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  135. Inder TE, Warfield SK, Wang H, Hüppi PS, Volpe JJ. Abnormal cerebral structure is present at term in premature infants. Pediatrics. 2005 Feb; 115(2):286-94.
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  136. Haker S, Wells WM, Warfield SK, Talos IF, Bhagwat JG, Goldberg-Zimring D, Mian A, Ohno-Machado L, Zou KH. Combining classifiers using their receiver operating characteristics and maximum likelihood estimation. Med Image Comput Comput Assist Interv. 2005; 8(Pt 1):506-14.
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  137. Wittek A, Kikinis R, Warfield SK, Miller K. Brain shift computation using a fully nonlinear biomechanical model. Med Image Comput Comput Assist Interv. 2005; 8(Pt 2):583-90.
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  138. Goldberg-Zimring D, Mewes AU, Maddah M, Warfield SK. Diffusion tensor magnetic resonance imaging in multiple sclerosis. J Neuroimaging. 2005; 15(4 Suppl):68S-81S.
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  139. Clatz O, Delingette H, Talos IF, Golby AJ, Kikinis R, Jolesz FA, Ayache N, Warfield SK. Hybrid formulation of the model-based non-rigid registration problem to improve accuracy and robustness. Med Image Comput Comput Assist Interv. 2005; 8(Pt 2):295-302.
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  140. Automated Atlas-Based Clustering of White Matter Fiber Tracts from DTMRI. 2005.
  141. Medical Image Analysis for Image Guided Therapy. 2005.
  142. An articulated registration method. 2005.
  143. Maddah M, Mewes AU, Haker S, Grimson WE, Warfield SK. Automated atlas-based clustering of white matter fiber tracts from DTMRI. Med Image Comput Comput Assist Interv. 2005; 8(Pt 1):188-95.
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  144. Robust nonrigid registration to capture brain shift from intraoperative MRI. 2005.
  145. 3D Statistical Shape Models to Embed Spatial Relationship Information. 2005.
  146. Brain Shift Computation Using a Fully Nonlinear Biomechanical Model. 2005.
  147. A Dynamic Data Driven Grid System for Intra-operative Image Guided Neurosurgery. 2005.
  148. brid Formulation of the Model-Based Non-rigid Registration Problem to Improve Accuracy and Robustness. 2005.
  149. Automatic Initialization of 3D Deformable Models for Cartilage Segmentation. 2005.
  150. du Bois d'Aische A, De Craene M, Macq B, Warfield S. An improved articulated registration method for neck images. Conf Proc IEEE Eng Med Biol Soc. 2005; 7:7668-71.
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  151. Spectral Clustering Algorithms for Ultrasound Image Segmentation. 2005.
  152. Realistic simulation of the 3-D growth of brain tumors in MR images coupling diffusion with biomechanical deformation. 2005.
  153. Goldberg-Zimring D, Meier DS, Bouix S, Warfield SK. Studying anatomy and disease in medical images using shape analysis. Leondes CT, editor. Medical Imaging Systems Technology: Methods in Diagnosis Optimization. 2005; 4:329-361.
  154. Wiegand LC, Warfield SK, Levitt JJ, Hirayasu Y, Salisbury DF, Heckers S, Bouix S, Schwartz D, Spencer M, Dickey CC, Kikinis R, Jolesz FA, McCarley RW, Shenton ME. An in vivo MRI study of prefrontal cortical complexity in first-episode psychosis. Am J Psychiatry. 2005 Jan; 162(1):65-70.
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  155. Combining Classifiers Using Their Receiver Operating Characteristics and Maximum Likelihood Estimation. 2005.
  156. Archip N, Rohling R, Cooperberg P, Tahmasebpour H, Warfield SK. Spectral clustering algorithms for ultrasound image segmentation. Med Image Comput Comput Assist Interv. 2005; 8(Pt 2):862-9.
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  157. Warfield SK, Haker SJ, Talos IF, Kemper CA, Weisenfeld N, Mewes AU, Goldberg-Zimring D, Zou KH, Westin CF, Wells WM, Tempany CM, Golby A, Black PM, Jolesz FA, Kikinis R. Capturing intraoperative deformations: research experience at Brigham and Women's Hospital. Med Image Anal. 2005 Apr; 9(2):145-62.
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  158. Hoyte L, Jakab M, Warfield SK, Shott S, Flesh G, Fielding JR. Levator ani thickness variations in symptomatic and asymptomatic women using magnetic resonance-based 3-dimensional color mapping. Am J Obstet Gynecol. 2004 Sep; 191(3):856-61.
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  159. Silverman SG, Sun MR, Tuncali K, Morrison PR, vanSonnenberg E, Shankar S, Zou KH, Warfield SK. Three-dimensional assessment of MRI-guided percutaneous cryotherapy of liver metastases. AJR Am J Roentgenol. 2004 Sep; 183(3):707-12.
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  160. Wei X, Guttmann CR, Warfield SK, Eliasziw M, Mitchell JR. Has your patient's multiple sclerosis lesion burden or brain atrophy actually changed? Mult Scler. 2004 Aug; 10(4):402-6.
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  161. Warfield SK, Zou KH, Wells WM. Simultaneous truth and performance level estimation (STAPLE): an algorithm for the validation of image segmentation. IEEE Trans Med Imaging. 2004 Jul; 23(7):903-21.
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  162. Goldberg-Zimring D, Achiron A, Warfield SK, Guttmann CR, Azhari H. Application of spherical harmonics derived space rotation invariant indices to the analysis of multiple sclerosis lesions' geometry by MRI. Magn Reson Imaging. 2004 Jul; 22(6):815-25.
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  163. Tolsa CB, Zimine S, Warfield SK, Freschi M, Sancho Rossignol A, Lazeyras F, Hanquinet S, Pfizenmaier M, Huppi PS. Early alteration of structural and functional brain development in premature infants born with intrauterine growth restriction. Pediatr Res. 2004 Jul; 56(1):132-8.
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  164. Zou KH, Wells WM, Kikinis R, Warfield SK. Three validation metrics for automated probabilistic image segmentation of brain tumours. Stat Med. 2004 Apr 30; 23(8):1259-82.
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  165. Als H, Duffy FH, McAnulty GB, Rivkin MJ, Vajapeyam S, Mulkern RV, Warfield SK, Huppi PS, Butler SC, Conneman N, Fischer C, Eichenwald EC. Early experience alters brain function and structure. Pediatrics. 2004 Apr; 113(4):846-57.
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  166. Grau V, Mewes AU, Alcañiz M, Kikinis R, Warfield SK. Improved watershed transform for medical image segmentation using prior information. IEEE Trans Med Imaging. 2004 Apr; 23(4):447-58.
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  167. Zou KH, Warfield SK, Bharatha A, Tempany CM, Kaus MR, Haker SJ, Wells WM, Jolesz FA, Kikinis R. Statistical validation of image segmentation quality based on a spatial overlap index. Acad Radiol. 2004 Feb; 11(2):178-89.
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  168. Wiegand LC, Warfield SK, Levitt JJ, Hirayasu Y, Salisbury DF, Heckers S, Dickey CC, Kikinis R, Jolesz FA, McCarley RW, Shenton ME. Prefrontal cortical thickness in first-episode psychosis: a magnetic resonance imaging study. Biol Psychiatry. 2004 Jan 15; 55(2):131-40.
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  169. Mahnaz Maddah Kelly H. Zou William M. Wells Ron Kikinis Simon K. Warfield. Automatic Optimization of Segmentation Algorithms Through Simultaneous Truth and Performance Level Estimation (STAPLE). 2004; 274-282.
  170. Pohl, Kilian M. Warfield, Simon K. Kikinis, Ron Grimson, W. Eric L. Wells, William M. Coupling Statistical Segmentation and PCA Shape Modeling. 2004; 151-159.
  171. Tsai, Andy Wells, William M. Warfield, Simon K. Willsky, Alan S. Level Set Methods in an EM Framework for Shape Classification and Estimation. 2004; 1-9.
  172. Vigneron, L. Verly, J. G. Warfield, S. K. Modelling Surgical Cuts, Retractions, and Resections via Extended Finite Element Method. 2004; 311-318.
  173. Anderson NG, Warfield SK, Wells S, Spencer C, Balasingham A, Volpe JJ, Inder TE. A limited range of measures of 2-D ultrasound correlate with 3-D MRI cerebral volumes in the premature infant at term. Ultrasound Med Biol. 2004 Jan; 30(1):11-8.
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  174. Craene MD, du Bois d’Aische A, Talos IF, Ferrant M, Black PM, Jolesz F, Kikinis R, Macq B, Warfield SK. Dense Deformation Field Estimation for Brain Intra-Operative Images Registration. SPIE Medical imaging: Image Processing. 2004.
  175. Weisenfeld NI, Warfield SK. Normalization of Joint Image-Intensity Statistics in MRI using the Kullback-Leibler Divergence. International Symposium on Biomedical Imaging. 2004.
  176. Warfield SK. Medical Image Analysis Software. 2004.
  177. Zou KH, Warfield SK, Fielding JR, Tempany CM, William MW, Kaus MR, Jolesz FA, Kikinis R. Statistical validation based on parametric receiver operating characteristic analysis of continuous classification data. Acad Radiol. 2003 Dec; 10(12):1359-68.
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  178. Hunt RW, Warfield SK, Wang H, Kean M, Volpe JJ, Inder TE. Assessment of the impact of the removal of cerebrospinal fluid on cerebral tissue volumes by advanced volumetric 3D-MRI in posthaemorrhagic hydrocephalus in a premature infant. J Neurol Neurosurg Psychiatry. 2003 May; 74(5):658-60.
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  179. Jaume S, Ferrant M, Macq B, Hoyte L, Fielding JR, Schreyer A, Kikinis R, Warfield SK. Tumor detection in the bladder wall with a measurement of abnormal thickness in CT scans. IEEE Trans Biomed Eng. 2003 Mar; 50(3):383-90.
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  180. Talos IF, O’Donnell L, Westin CF, Warfield SK, Wells III W, Yoo SS, Panych LP, Golby A, Mamata H, Maier SS, Ratiu P, Guttmann CR, Black PM, Jolesz FA, Kikinis R. Diffusion Tensor and Functional MRI Fusion with Anatomical MRI for Image-Guided Neurosurgery. MICCAI 2003: Sixth International Conference on Medical Image Computing and Computer- Assisted Intervention. 2003; 407–415.
  181. Warfield SK, Talos F, Kemper CA, O’Donnell L, Westin CF, Wells WM, Black PM, Jolesz FA, Kikinis R. Capturing Brain Deformation. International Symposium on Surgical Simulation and Soft Tissue Modeling. 2003; 2673:203–217.
  182. Ruiz-Alzola J, Suarez E, Alberola-Lopez C, Warfield SK, Westin CF. Geostatistical Medical Image Registration. Geostatistical Medical Image Registration. MICCAI 2003: Sixth International Conference on Medical Image Computing and Computer- Assisted Intervention. 2003; 894 – 901.
  183. Chinzei K, Warfield SK, Hata N, Tempany CMC, Jolesz FA, Kikinis R. Planning, simulation and assistance with intraoperative MRI. Min Invas Ther and Allied Technol. 2003; 12(1-2):59-64.
  184. Ferrant M, Nabavi A, Macq B, Black PM, Jolesz FA, Kikinis R, Warfield SK. Serial registration of intraoperative MR images of the brain. Med Image Anal. 2002 Dec; 6(4):337-59.
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  185. Hirose M, Bharatha A, Hata N, Zou KH, Warfield SK, Cormack RA, D'Amico A, Kikinis R, Jolesz FA, Tempany CM. Quantitative MR imaging assessment of prostate gland deformation before and during MR imaging-guided brachytherapy. Acad Radiol. 2002 Aug; 9(8):906-12.
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  186. Warfield SK, Talos F, Tei A, Bharatha A, Nabavi A, Ferrant M, Black PM, Jolesz FA, Kikinis R. Real-Time Registration of Volumetric Brain MRI by Biomechanical Simulation of Deformation during Image Guided Neurosurgery. Comput Visual Sci. 2002; 5(1):3-11.
  187. Ruiz-Alzola J, Westin CF, Warfield SK, Alberola C, Maier S, Kikinis R. Nonrigid registration of 3D tensor medical data. Med Image Anal. 2002 Jun; 6(2):143-61.
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  188. Wei X, Warfield SK, Zou KH, Wu Y, Li X, Guimond A, Mugler JP, Benson RR, Wolfson L, Weiner HL, Guttmann CR. Quantitative analysis of MRI signal abnormalities of brain white matter with high reproducibility and accuracy. J Magn Reson Imaging. 2002 Feb; 15(2):203-9.
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  189. Fielding JR, Hoyte L, Okon SA, Schreyer A, Lee J, Zou KH, Warfield S, Richie JP, Loughlin KR, O'Leary MP, Doyle CJ, Kikinis R. Tumor detection by virtual cystoscopy with color mapping of bladder wall thickness. J Urol. 2002 Feb; 167(2 Pt 1):559-62.
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  190. Benson RR, Guttmann CR, Wei X, Warfield SK, Hall C, Schmidt JA, Kikinis R, Wolfson LI. Older people with impaired mobility have specific loci of periventricular abnormality on MRI. Neurology. 2002 Jan 8; 58(1):48-55.
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  191. Warfield SK, Guimond A, Roche A, Bharatha A, Tei A, Talos F, Rexilius J, Ruiz-Alzola J, Westin CF, Haker S, Angenent S, Tannenbaum A, Jolesz FA, Kikinis R. Advanced Nonrigid Registration Algorithms for Image Fusion. Toga AW, Mazziotta JC. Brain Mapping: The Methods. 2002; 661-690.
  192. Warfield SK, Zou KH, Wells WM. Validation of Image Segmentation and Expert Quality with an Expectation-Maximization Algorithm. MICCAI 2002: Fifth International Conference on Medical Image Computing and Computer-Assisted Intervention. 2002; 298–306.
  193. Guimond A, Guttmann CRG, Warfield SK, Westin CF. Deformable Registration of DTMRI Data Based On Transformation Invariant Tensor Characteristics. International Symposium on Biomedical Imaging: Macro to Nano. 2002; 1-4.
  194. Zou KH, Wells WM, Kaus MR, Kikinis R, Jolesz FA, Warfield SK. Statistical Validation of Automated Probabilistic Segmentation Against Composite Latent Expert Ground Truth in MR Imaging of Brain Tumors. MICCAI 2002: Fifth International Conference on Medical Image Computing and Computer-Assisted Intervention. 2002; 315–322.
  195. Jaume S, Macq B, Warfield SK. Automated Labeling of the Cortical Surface Using a Deformable Multiresolution Mesh. MICCAI 2002: Fifth International Conference on Medical Image Computing and Computer-Assisted Intervention. 2002; 451–458.
  196. Warfield SK, Zou KH, Kaus MR, Wells WM. Simultaneous Validation of Image Segmentation and Assessment of Expert Quality. International Symposium on Biomedical Imaging: Macro to Nano. 2002; 1–4.
  197. Pohl KM,Wells WM, Guimond A, Kasai K, Shenton ME, Kikinis R, Grimson WEL, Warfield SK. Incorporating Non-rigid Registration into Expectation Maximization Algorithm to Segment MR Images. MICCAI 2002: Fifth International Conference on Medical Image Computing and Computer-Assisted Intervention. 2002; 564–571.
  198. Bharatha A, Hirose M, Hata N, Warfield SK, Ferrant M, Zou KH, Suarez-Santana E, Ruiz-Alzola J, D'Amico A, Cormack RA, Kikinis R, Jolesz FA, Tempany CM. Evaluation of three-dimensional finite element-based deformable registration of pre- and intraoperative prostate imaging. Med Phys. 2001 Dec; 28(12):2551-60.
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  199. Ferrant M, Nabavi A, Macq B, Jolesz FA, Kikinis R, Warfield SK. Registration of 3-D intraoperative MR images of the brain using a finite-element biomechanical model. IEEE Trans Med Imaging. 2001 Dec; 20(12):1384-97.
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  200. Nabavi A, Black PM, Gering DT, Westin CF, Mehta V, Pergolizzi RS, Ferrant M, Warfield SK, Hata N, Schwartz RB, Wells WM, Kikinis R, Jolesz FA. Serial intraoperative magnetic resonance imaging of brain shift. Neurosurgery. 2001 Apr; 48(4):787-97; discussion 797-8.
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  201. Kaus MR, Warfield SK, Nabavi A, Black PM, Jolesz FA, Kikinis R. Automated segmentation of MR images of brain tumors. Radiology. 2001 Feb; 218(2):586-91.
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  202. Murphy BP, Inder TE, Huppi PS, Warfield S, Zientara GP, Kikinis R, Jolesz FA, Volpe JJ. Impaired cerebral cortical gray matter growth after treatment with dexamethasone for neonatal chronic lung disease. Pediatrics. 2001 Feb; 107(2):217-21.
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  203. Warfield SK, Rexilius J, Huppi PS, Inder TE, Miller EG, Wells III WM, Zientara GP, Jolesz FA, Kikinis R. A Binary Entropy Measure to Assess Nonrigid Registration Algorithms. MICCAI 2001: Fourth International Conference on Medical Image Computing and Computer-Assisted Intervention. 2001; 266–274.
  204. Sperling RA, Guttmann CR, Hohol MJ, Warfield SK, Jakab M, Parente M, Diamond EL, Daffner KR, Olek MJ, Orav EJ, Kikinis R, Jolesz FA, Weiner HL. Regional magnetic resonance imaging lesion burden and cognitive function in multiple sclerosis: a longitudinal study. Arch Neurol. 2001 Jan; 58(1):115-21.
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  205. Rexilius J, Warfield SK, Guttmann CRG, Wei X, Benson R, Wolfson L, Shenton M, Handels H, Kikinis R. A Novel Nonrigid Registration Algorithm and Applications. MICCAI 2001: Fourth International Conference on Medical Image Computing and Computer-Assisted Intervention. 2001; 923–931.
  206. Pachai C, Zhu YM, Guttmann CRG, Kikinis R, Jolesz FA, Gimenez G, Froment JC, Confavreux C, Warfield SK. Unsupervised and Adaptive Segmentation of Multispectral 3D Magnetic Resonance Images of Human Brain: a Generic Approach. MICCAI 2001: Fourth International Conference on Medical Image Computing and Computer-Assisted Intervention. 2001; 1067–1074.
  207. Hata N, Nabavi A, Wells WM, Warfield SK, Kikinis R, Black PM, Jolesz FA. Three-dimensional optical flow method for measurement of volumetric brain deformation from intraoperative MR images. J Comput Assist Tomogr. 2000 Jul-Aug; 24(4):531-8.
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  208. Warfield SK, Mulkern RV, Winalski CS, Jolesz FA, Kikinis R. An image processing strategy for the quantification and visualization of exercise-induced muscle MRI signal enhancement. J Magn Reson Imaging. 2000 May; 11(5):525-31.
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  209. Schreyer AG, Fielding JR, Warfield SK, Lee JH, Loughlin KR, Dumanli H, Jolesz FA, Kikinis R. Virtual CT cystoscopy: color mapping of bladder wall thickness. Invest Radiol. 2000 May; 35(5):331-4.
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  210. Guttmann CR, Benson R, Warfield SK, Wei X, Anderson MC, Hall CB, Abu-Hasaballah K, Mugler JP, Wolfson L. White matter abnormalities in mobility-impaired older persons. Neurology. 2000 Mar 28; 54(6):1277-83.
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  211. Warfield SK, Kaus M, Jolesz FA, Kikinis R. Adaptive, template moderated, spatially varying statistical classification. Med Image Anal. 2000 Mar; 4(1):43-55.
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  212. Kaus MR, Nabavi A, Mamisch CT,Wells WM, Jolesz FA, Kikinis R,Warfield SK. Simulation of Corticospinal Tract Displacement in Patients with Brain Tumors. MICCAI 2000: Third International Conference on Medical Robotics, Imaging And Computer Assisted Surgery. 2000; 9–18.
  213. Warfield SK, Ferrant M, Gallez X, Nabavi A, Jolesz FA, Kikinis R. Real-Time Biomechanical Simulation of Volumetric Brain Deformation for Image Guided Neurosurgery. SC 2000: High Performance Networking and Computing Conference. 2000; 1–16.
  214. Ruiz-Alzola J, Westin CF, Warfield SK, Nabavi A, Kikinis R. Nonrigid Registration of 3D Scalar, Vector and Tensor Medical Data. MICCAI 2000: Third International Conference on Medical Robotics, Imaging And Computer Assisted Surgery. 2000; 541–550.
  215. Warfield SK, Nabavi A, Butz T, Tuncali K, Silverman SG, Black PM, Jolesz FA, Kikinis R. Intraoperative Segmentation and Nonrigid Registration For Image Guided Therapy. MICCAI 2000: Third International Conference on Medical Robotics, Imaging And Computer Assisted Surgery. 2000; 176–185.
  216. Butz T,Warfield SK, Tuncali K, Silverman SG, van Sonnenberg E, Jolesz FA, Kikinis R. Pre- and Intra-operative Planning and Simulation of Percutaneous Tumor Ablation. MICCAI 2000: Third International Conference on Medical Robotics, Imaging And Computer Assisted Surgery. 2000; 317–326.
  217. Kikinis R, Mehta NR, Nabavi A, Chatzidakis E, Warfield SK, Gering D, Weisenfeld N, Pergolizzi RS, Schwarz RB, Hata N, Wells W, Grimson E, Black PM, Jolesz FA. Intraoperative Visualization. Mazziotta JC, Toga AW, Frackowiak RSJ. Brain Mapping: The Disorders. 2000; 107-129.
  218. Ferrant M, Nabavi A, Macq B, Warfield SK. Deformable Modeling for Characterizing Biomedical Shape Changes. DGCI2000: Discrete Geometry for Computer Imagery. 2000; 1953(Lecture Notes in Computer Scie):235–248.
  219. Ferrant M,Warfield SK, Nabavi A, Macq B, Kikinis R. Registration of 3D Intraoperative MR Images of the Brain Using a Finite Element Biomechanical Model. MICCAI 2000: Third International Conference on Medical Robotics, Imaging And Computer Assisted Surgery. 2000; 19–28.
  220. Inder TE, Huppi PS, Warfield S, Kikinis R, Zientara GP, Barnes PD, Jolesz F, Volpe JJ. Periventricular white matter injury in the premature infant is followed by reduced cerebral cortical gray matter volume at term. Ann Neurol. 1999 Nov; 46(5):755-60.
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  221. Guttmann CR, Kikinis R, Anderson MC, Jakab M, Warfield SK, Killiany RJ, Weiner HL, Jolesz FA. Quantitative follow-up of patients with multiple sclerosis using MRI: reproducibility. J Magn Reson Imaging. 1999 Apr; 9(4):509-18.
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  222. Ferrant M, Warfield SK, Guttmann CRG, Mulkern RV, Jolesz FA, Kikinis R. 3D Image Matching Using a Finite Element Based Elastic Deformation Model. MICCAI 99: Second International Conference on Medical Image Computing and Computer-Assisted Intervention. 1999; 202–209.
  223. Hata N, Nabavi A, Warfield S, Wells WM, Kikinis R, Jolesz FA. A volumetric optical flow method for measurement of brain deformation from intraoperative magnetic resonance images. MICCAI 99: Second International Conference on Medical Image Computing and Computer-Assisted Intervention. 1999; 928–935.
  224. Warfield SK, Robatino A, Dengler J, Jolesz FA, Kikinis R. Nonlinear Registration and Template Driven Segmentation. Toga AW, editor. Brain Warping. 1999; 67-84.
  225. Kaus MR, Warfield SK, Nabavi A, Chatzidakis E, Black PM, Jolesz FA, Kikinis R. Segmentation of MRI of meningiomas and low grade gliomas. MICCAI 99: Second International Conference on Medical Image Computing and Computer-Assisted Intervention. 1999; 1–10.
  226. Warfield SK, Westin CF, Guttmann CRG, Albert M, Jolesz FA, Kikinis R. Fractional Segmentation of White Matter. MICCAI 99: Second International Conference on Medical Image Computing and Computer-Assisted Intervention. 1999; 62–71.
  227. Mulkern RV, Winalski C, Zengingonul HP, Warfield S, Holtzman D. Proton Magnetic Resonance Imaging of Exercised Muscle. Pandolf KB, Takeda N, Singal PK. Adaptation Biology and Medicine. 1999; 170-185.
  228. Warfield, SK Jolesz, FA Kikinis, R. A High Performance Computing Approach to the Registration of Medical Imaging Data. Parallel Computing. 1998; 24(9-10):1345-1368.
  229. Hüppi PS, Warfield S, Kikinis R, Barnes PD, Zientara GP, Jolesz FA, Tsuji MK, Volpe JJ. Quantitative magnetic resonance imaging of brain development in premature and mature newborns. Ann Neurol. 1998 Feb; 43(2):224-35.
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  230. Hata N, Dohi T, Warfield SK, Wells III W, Kikinis R, Jolesz FA. Multimodality Deformable Registration of Pre- and Intraoperative Images for MRI-Guided Brain Surgery. MICCAI 98: First International Conference on Medical Image Computing and Computer-Assisted Intervention. 1998; 1067–1074.
  231. Warfield SK, Jolesz FA, Kikinis R. Real-Time Image Segmentation for Image-Guided Surgery. SC 1998: High Performance Networking and Computing Conference. 1998; 1–14.
  232. Warfield SK, Kaus M, Jolesz FA, Kikinis R. Adaptive Template Moderated Spatially Varying Statistical Classification. MICCAI 98: First International Conference on Medical Image Computing and Computer-Assisted Intervention. 1998; 231–238.
  233. Westin CF, Warfield SK, Bhalerao A, Mui L, Richolt J, Kikinis R. Tensor controlled local structure enhancement of CT images for bone segmentation. MICCAI 98: First International Conference on Medical Image Computing and Computer-Assisted Intervention. 1998; 1205–1212.
  234. Iosifescu DV, Shenton ME, Warfield SK, Kikinis R, Dengler J, Jolesz FA, McCarley RW. An automated registration algorithm for measuring MRI subcortical brain structures. Neuroimage. 1997 Jul; 6(1):13-25.
    View in: PubMed
  235. Warfield SK. Segmentation of Magnetic Resonance Images of the Brain. 1997.
  236. Warfield, S. Fast k-NN Classification for Multichannel Image Data. Pattern Recognition Letters. 1996; 17(7):713-721.
  237. Warfield S, Dengler J, Zaers J, Guttmann CR, Wells III WM, Ettinger GJ, Hiller J, Kikinis R. Automatic identification of Grey Matter Structures from MRI to Improve the Segmentation of White Matter Lesions. MRCAS’95 Second International Symposium on Medical Robotics and Computer Assisted Surgery. 1995; 140–147.
  238. Warfield S, Dengler J, Zaers J, Guttmann CR, Wells WM, Ettinger GJ, Hiller J, Kikinis R. Automatic identification of gray matter structures from MRI to improve the segmentation of white matter lesions. J Image Guid Surg. 1995; 1(6):326-38.
    View in: PubMed
  239. Warfield S, Sachdev P, Aniss A, Hiller J. Validation of Automatic Classification Strategies for the Measurement of Subcortical Hyperintensities on T-weighted Magnetic Resonance Images. S/CAR 94 Symposium for Computer Assisted Radiology. 1994; 319–324.
  240. Hiller J, Zrimec T, Mankovich NJ, Warfield S. Visualising Cerebral Vasculature: Imaging Limitations from 2D and 3D Data. SPIE Medical Imaging 1994. Image Capture, Formatting and Display. 1994; 2164:74–82.
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