Profiles

1.	Hiller J, Zrimec T, Mankovich NJ, Warfield S. Visualising Cerebral Vasculature: Imaging Limitations from 2D and 3D Data. SPIE Medical Imaging 1994. Image Capture, Formatting and Display. 1994; 2164:74–82.
2.	Warfield S, Sachdev P, Aniss A, Hiller J. Validation of Automatic Classification Strategies for the Measurement of Subcortical Hyperintensities on T-weighted Magnetic Resonance Images. S/CAR 94 Symposium for Computer Assisted Radiology. 1994; 319–324.
3.	Warfield S, Dengler J, Zaers J, Guttmann CR, Wells III WM, Ettinger GJ, Hiller J, Kikinis R. Automatic identification of Grey Matter Structures from MRI to Improve the Segmentation of White Matter Lesions. MRCAS’95 Second International Symposium on Medical Robotics and Computer Assisted Surgery. 1995; 140–147.
4.	Warfield S, Dengler J, Zaers J, Guttmann CR, Wells WM, Ettinger GJ, Hiller J, Kikinis R. Automatic identification of gray matter structures from MRI to improve the segmentation of white matter lesions. J Image Guid Surg. 1995; 1(6):326-38.
5.	Warfield, S. Fast k-NN Classification for Multichannel Image Data. Pattern Recognition Letters. 1996; 17(7):713-721.
6.	Warfield SK. Segmentation of Magnetic Resonance Images of the Brain. 1997.
7.	Iosifescu DV, Shenton ME, Warfield SK, Kikinis R, Dengler J, Jolesz FA, McCarley RW. An automated registration algorithm for measuring MRI subcortical brain structures. Neuroimage. 1997 Jul; 6(1):13-25.
8.	Hata N, Dohi T, Warfield SK, Wells III W, Kikinis R, Jolesz FA. Multimodality Deformable Registration of Pre- and Intraoperative Images for MRI-Guided Brain Surgery. MICCAI 98: First International Conference on Medical Image Computing and Computer-Assisted Intervention. 1998; 1067–1074.
9.	Warfield SK, Jolesz FA, Kikinis R. Real-Time Image Segmentation for Image-Guided Surgery. SC 1998: High Performance Networking and Computing Conference. 1998; 1–14.
10.	Warfield SK, Kaus M, Jolesz FA, Kikinis R. Adaptive Template Moderated Spatially Varying Statistical Classification. MICCAI 98: First International Conference on Medical Image Computing and Computer-Assisted Intervention. 1998; 231–238.
11.	Westin CF, Warfield SK, Bhalerao A, Mui L, Richolt J, Kikinis R. Tensor controlled local structure enhancement of CT images for bone segmentation. MICCAI 98: First International Conference on Medical Image Computing and Computer-Assisted Intervention. 1998; 1205–1212.
12.	Hüppi PS, Warfield S, Kikinis R, Barnes PD, Zientara GP, Jolesz FA, Tsuji MK, Volpe JJ. Quantitative magnetic resonance imaging of brain development in premature and mature newborns. Ann Neurol. 1998 Feb; 43(2):224-35.
13.	Warfield, SK Jolesz, FA Kikinis, R. A High Performance Computing Approach to the Registration of Medical Imaging Data. Parallel Computing. 1998; 24(9-10):1345-1368.
14.	Ferrant M, Warfield SK, Guttmann CRG, Mulkern RV, Jolesz FA, Kikinis R. 3D Image Matching Using a Finite Element Based Elastic Deformation Model. MICCAI 99: Second International Conference on Medical Image Computing and Computer-Assisted Intervention. 1999; 202–209.
15.	Hata N, Nabavi A, Warfield S, Wells WM, Kikinis R, Jolesz FA. A volumetric optical flow method for measurement of brain deformation from intraoperative magnetic resonance images. MICCAI 99: Second International Conference on Medical Image Computing and Computer-Assisted Intervention. 1999; 928–935.
16.	Kaus MR, Warfield SK, Nabavi A, Chatzidakis E, Black PM, Jolesz FA, Kikinis R. Segmentation of MRI of meningiomas and low grade gliomas. MICCAI 99: Second International Conference on Medical Image Computing and Computer-Assisted Intervention. 1999; 1–10.
17.	Mulkern RV, Winalski C, Zengingonul HP, Warfield S, Holtzman D. Proton Magnetic Resonance Imaging of Exercised Muscle. Pandolf KB, Takeda N, Singal PK. Adaptation Biology and Medicine. 1999; 170-185.
18.	Warfield SK, Robatino A, Dengler J, Jolesz FA, Kikinis R. Nonlinear Registration and Template Driven Segmentation. Toga AW, editor. Brain Warping. 1999; 67-84.
19.	Warfield SK, Westin CF, Guttmann CRG, Albert M, Jolesz FA, Kikinis R. Fractional Segmentation of White Matter. MICCAI 99: Second International Conference on Medical Image Computing and Computer-Assisted Intervention. 1999; 62–71.
20.	Guttmann CR, Kikinis R, Anderson MC, Jakab M, Warfield SK, Killiany RJ, Weiner HL, Jolesz FA. Quantitative follow-up of patients with multiple sclerosis using MRI: reproducibility. J Magn Reson Imaging. 1999 Apr; 9(4):509-18.
21.	Inder TE, Huppi PS, Warfield S, Kikinis R, Zientara GP, Barnes PD, Jolesz F, Volpe JJ. Periventricular white matter injury in the premature infant is followed by reduced cerebral cortical gray matter volume at term. Ann Neurol. 1999 Nov; 46(5):755-60.
22.	Butz T,Warfield SK, Tuncali K, Silverman SG, van Sonnenberg E, Jolesz FA, Kikinis R. Pre- and Intra-operative Planning and Simulation of Percutaneous Tumor Ablation. MICCAI 2000: Third International Conference on Medical Robotics, Imaging And Computer Assisted Surgery. 2000; 317–326.
23.	Ferrant M, Nabavi A, Macq B, Warfield SK. Deformable Modeling for Characterizing Biomedical Shape Changes. DGCI2000: Discrete Geometry for Computer Imagery. 2000; 1953(Lecture Notes in Computer Scie):235–248.
24.	Ferrant M,Warfield SK, Nabavi A, Macq B, Kikinis R. Registration of 3D Intraoperative MR Images of the Brain Using a Finite Element Biomechanical Model. MICCAI 2000: Third International Conference on Medical Robotics, Imaging And Computer Assisted Surgery. 2000; 19–28.
25.	Kaus MR, Nabavi A, Mamisch CT,Wells WM, Jolesz FA, Kikinis R,Warfield SK. Simulation of Corticospinal Tract Displacement in Patients with Brain Tumors. MICCAI 2000: Third International Conference on Medical Robotics, Imaging And Computer Assisted Surgery. 2000; 9–18.
26.	Kikinis R, Mehta NR, Nabavi A, Chatzidakis E, Warfield SK, Gering D, Weisenfeld N, Pergolizzi RS, Schwarz RB, Hata N, Wells W, Grimson E, Black PM, Jolesz FA. Intraoperative Visualization. Mazziotta JC, Toga AW, Frackowiak RSJ. Brain Mapping: The Disorders. 2000; 107-129.
27.	Ruiz-Alzola J, Westin CF, Warfield SK, Nabavi A, Kikinis R. Nonrigid Registration of 3D Scalar, Vector and Tensor Medical Data. MICCAI 2000: Third International Conference on Medical Robotics, Imaging And Computer Assisted Surgery. 2000; 541–550.
28.	Warfield SK, Ferrant M, Gallez X, Nabavi A, Jolesz FA, Kikinis R. Real-Time Biomechanical Simulation of Volumetric Brain Deformation for Image Guided Neurosurgery. SC 2000: High Performance Networking and Computing Conference. 2000; 1–16.
29.	Warfield SK, Nabavi A, Butz T, Tuncali K, Silverman SG, Black PM, Jolesz FA, Kikinis R. Intraoperative Segmentation and Nonrigid Registration For Image Guided Therapy. MICCAI 2000: Third International Conference on Medical Robotics, Imaging And Computer Assisted Surgery. 2000; 176–185.
30.	Warfield SK, Kaus M, Jolesz FA, Kikinis R. Adaptive, template moderated, spatially varying statistical classification. Med Image Anal. 2000 Mar; 4(1):43-55.
31.	Guttmann CR, Benson R, Warfield SK, Wei X, Anderson MC, Hall CB, Abu-Hasaballah K, Mugler JP, Wolfson L. White matter abnormalities in mobility-impaired older persons. Neurology. 2000 Mar 28; 54(6):1277-83.
32.	Schreyer AG, Fielding JR, Warfield SK, Lee JH, Loughlin KR, Dumanli H, Jolesz FA, Kikinis R. Virtual CT cystoscopy: color mapping of bladder wall thickness. Invest Radiol. 2000 May; 35(5):331-4.
33.	Warfield SK, Mulkern RV, Winalski CS, Jolesz FA, Kikinis R. An image processing strategy for the quantification and visualization of exercise-induced muscle MRI signal enhancement. J Magn Reson Imaging. 2000 May; 11(5):525-31.
34.	Hata N, Nabavi A, Wells WM, Warfield SK, Kikinis R, Black PM, Jolesz FA. Three-dimensional optical flow method for measurement of volumetric brain deformation from intraoperative MR images. J Comput Assist Tomogr. 2000 Jul-Aug; 24(4):531-8.
35.	Pachai C, Zhu YM, Guttmann CRG, Kikinis R, Jolesz FA, Gimenez G, Froment JC, Confavreux C, Warfield SK. Unsupervised and Adaptive Segmentation of Multispectral 3D Magnetic Resonance Images of Human Brain: a Generic Approach. MICCAI 2001: Fourth International Conference on Medical Image Computing and Computer-Assisted Intervention. 2001; 1067–1074.
36.	Rexilius J, Warfield SK, Guttmann CRG, Wei X, Benson R, Wolfson L, Shenton M, Handels H, Kikinis R. A Novel Nonrigid Registration Algorithm and Applications. MICCAI 2001: Fourth International Conference on Medical Image Computing and Computer-Assisted Intervention. 2001; 923–931.
37.	Sperling RA, Guttmann CR, Hohol MJ, Warfield SK, Jakab M, Parente M, Diamond EL, Daffner KR, Olek MJ, Orav EJ, Kikinis R, Jolesz FA, Weiner HL. Regional magnetic resonance imaging lesion burden and cognitive function in multiple sclerosis: a longitudinal study. Arch Neurol. 2001 Jan; 58(1):115-21.
38.	Warfield SK, Rexilius J, Huppi PS, Inder TE, Miller EG, Wells III WM, Zientara GP, Jolesz FA, Kikinis R. A Binary Entropy Measure to Assess Nonrigid Registration Algorithms. MICCAI 2001: Fourth International Conference on Medical Image Computing and Computer-Assisted Intervention. 2001; 266–274.
39.	Kaus MR, Warfield SK, Nabavi A, Black PM, Jolesz FA, Kikinis R. Automated segmentation of MR images of brain tumors. Radiology. 2001 Feb; 218(2):586-91.
40.	Murphy BP, Inder TE, Huppi PS, Warfield S, Zientara GP, Kikinis R, Jolesz FA, Volpe JJ. Impaired cerebral cortical gray matter growth after treatment with dexamethasone for neonatal chronic lung disease. Pediatrics. 2001 Feb; 107(2):217-21.
41.	Nabavi A, Black PM, Gering DT, Westin CF, Mehta V, Pergolizzi RS, Ferrant M, Warfield SK, Hata N, Schwartz RB, Wells WM, Kikinis R, Jolesz FA. Serial intraoperative magnetic resonance imaging of brain shift. Neurosurgery. 2001 Apr; 48(4):787-97; discussion 797-8.
42.	Bharatha A, Hirose M, Hata N, Warfield SK, Ferrant M, Zou KH, Suarez-Santana E, Ruiz-Alzola J, D'Amico A, Cormack RA, Kikinis R, Jolesz FA, Tempany CM. Evaluation of three-dimensional finite element-based deformable registration of pre- and intraoperative prostate imaging. Med Phys. 2001 Dec; 28(12):2551-60.
43.	Ferrant M, Nabavi A, Macq B, Jolesz FA, Kikinis R, Warfield SK. Registration of 3-D intraoperative MR images of the brain using a finite-element biomechanical model. IEEE Trans Med Imaging. 2001 Dec; 20(12):1384-97.
44.	Guimond A, Guttmann CRG, Warfield SK, Westin CF. Deformable Registration of DTMRI Data Based On Transformation Invariant Tensor Characteristics. International Symposium on Biomedical Imaging: Macro to Nano. 2002; 1-4.
45.	Jaume S, Macq B, Warfield SK. Automated Labeling of the Cortical Surface Using a Deformable Multiresolution Mesh. MICCAI 2002: Fifth International Conference on Medical Image Computing and Computer-Assisted Intervention. 2002; 451–458.
46.	Pohl KM,Wells WM, Guimond A, Kasai K, Shenton ME, Kikinis R, Grimson WEL, Warfield SK. Incorporating Non-rigid Registration into Expectation Maximization Algorithm to Segment MR Images. MICCAI 2002: Fifth International Conference on Medical Image Computing and Computer-Assisted Intervention. 2002; 564–571.
47.	Warfield SK, Guimond A, Roche A, Bharatha A, Tei A, Talos F, Rexilius J, Ruiz-Alzola J, Westin CF, Haker S, Angenent S, Tannenbaum A, Jolesz FA, Kikinis R. Advanced Nonrigid Registration Algorithms for Image Fusion. Toga AW, Mazziotta JC. Brain Mapping: The Methods. 2002; 661-690.
48.	Warfield SK, Zou KH, Kaus MR, Wells WM. Simultaneous Validation of Image Segmentation and Assessment of Expert Quality. International Symposium on Biomedical Imaging: Macro to Nano. 2002; 1–4.
49.	Warfield SK, Zou KH, Wells WM. Validation of Image Segmentation and Expert Quality with an Expectation-Maximization Algorithm. MICCAI 2002: Fifth International Conference on Medical Image Computing and Computer-Assisted Intervention. 2002; 298–306.
50.	Zou KH, Wells WM, Kaus MR, Kikinis R, Jolesz FA, Warfield SK. Statistical Validation of Automated Probabilistic Segmentation Against Composite Latent Expert Ground Truth in MR Imaging of Brain Tumors. MICCAI 2002: Fifth International Conference on Medical Image Computing and Computer-Assisted Intervention. 2002; 315–322.
51.	Benson RR, Guttmann CR, Wei X, Warfield SK, Hall C, Schmidt JA, Kikinis R, Wolfson LI. Older people with impaired mobility have specific loci of periventricular abnormality on MRI. Neurology. 2002 Jan 8; 58(1):48-55.
52.	Fielding JR, Hoyte LX, Okon SA, Schreyer A, Lee J, Zou KH, Warfield S, Richie JP, Loughlin KR, O'Leary MP, Doyle CJ, Kikinis R. Tumor detection by virtual cystoscopy with color mapping of bladder wall thickness. J Urol. 2002 Feb; 167(2 Pt 1):559-62.
53.	Wei X, Warfield SK, Zou KH, Wu Y, Li X, Guimond A, Mugler JP, Benson RR, Wolfson L, Weiner HL, Guttmann CR. Quantitative analysis of MRI signal abnormalities of brain white matter with high reproducibility and accuracy. J Magn Reson Imaging. 2002 Feb; 15(2):203-9.
54.	Ruiz-Alzola J, Westin CF, Warfield SK, Alberola C, Maier S, Kikinis R. Nonrigid registration of 3D tensor medical data. Med Image Anal. 2002 Jun; 6(2):143-61.
55.	Warfield SK, Talos F, Tei A, Bharatha A, Nabavi A, Ferrant M, Black PM, Jolesz FA, Kikinis R. Real-Time Registration of Volumetric Brain MRI by Biomechanical Simulation of Deformation during Image Guided Neurosurgery. Comput Visual Sci. 2002; 5(1):3-11.
56.	Hirose M, Bharatha A, Hata N, Zou KH, Warfield SK, Cormack RA, D'Amico A, Kikinis R, Jolesz FA, Tempany CM. Quantitative MR imaging assessment of prostate gland deformation before and during MR imaging-guided brachytherapy. Acad Radiol. 2002 Aug; 9(8):906-12.
57.	Ferrant M, Nabavi A, Macq B, Black PM, Jolesz FA, Kikinis R, Warfield SK. Serial registration of intraoperative MR images of the brain. Med Image Anal. 2002 Dec; 6(4):337-59.
58.	Chinzei K, Warfield SK, Hata N, Tempany CMC, Jolesz FA, Kikinis R. Planning, simulation and assistance with intraoperative MRI. Min Invas Ther and Allied Technol. 2003; 12(1-2):59-64.
59.	Ruiz-Alzola J, Suarez E, Alberola-Lopez C, Warfield SK, Westin CF. Geostatistical Medical Image Registration. Geostatistical Medical Image Registration. MICCAI 2003: Sixth International Conference on Medical Image Computing and Computer- Assisted Intervention. 2003; 894 – 901.
60.	Talos IF, O’Donnell L, Westin CF, Warfield SK, Wells III W, Yoo SS, Panych LP, Golby A, Mamata H, Maier SS, Ratiu P, Guttmann CR, Black PM, Jolesz FA, Kikinis R. Diffusion Tensor and Functional MRI Fusion with Anatomical MRI for Image-Guided Neurosurgery. MICCAI 2003: Sixth International Conference on Medical Image Computing and Computer- Assisted Intervention. 2003; 407–415.
61.	Warfield SK, Talos F, Kemper CA, O’Donnell L, Westin CF, Wells WM, Black PM, Jolesz FA, Kikinis R. Capturing Brain Deformation. International Symposium on Surgical Simulation and Soft Tissue Modeling. 2003; 2673:203–217.
62.	Jaume S, Ferrant M, Macq B, Hoyte L, Fielding JR, Schreyer A, Kikinis R, Warfield SK. Tumor detection in the bladder wall with a measurement of abnormal thickness in CT scans. IEEE Trans Biomed Eng. 2003 Mar; 50(3):383-90.
63.	Hunt RW, Warfield SK, Wang H, Kean M, Volpe JJ, Inder TE. Assessment of the impact of the removal of cerebrospinal fluid on cerebral tissue volumes by advanced volumetric 3D-MRI in posthaemorrhagic hydrocephalus in a premature infant. J Neurol Neurosurg Psychiatry. 2003 May; 74(5):658-60.
64.	Zou KH, Warfield SK, Fielding JR, Tempany CM, William MW, Kaus MR, Jolesz FA, Kikinis R. Statistical validation based on parametric receiver operating characteristic analysis of continuous classification data. Acad Radiol. 2003 Dec; 10(12):1359-68.
65.	Anderson NG, Warfield SK, Wells S, Spencer C, Balasingham A, Volpe JJ, Inder TE. A limited range of measures of 2-D ultrasound correlate with 3-D MRI cerebral volumes in the premature infant at term. Ultrasound Med Biol. 2004 Jan; 30(1):11-8.
66.	Craene MD, du Bois d’Aische A, Talos IF, Ferrant M, Black PM, Jolesz F, Kikinis R, Macq B, Warfield SK. Dense Deformation Field Estimation for Brain Intra-Operative Images Registration. SPIE Medical imaging: Image Processing. 2004.
67.	Mahnaz Maddah Kelly H. Zou William M. Wells Ron Kikinis Simon K. Warfield. Automatic Optimization of Segmentation Algorithms Through Simultaneous Truth and Performance Level Estimation (STAPLE). 2004; 274-282.
68.	Pohl, Kilian M. Warfield, Simon K. Kikinis, Ron Grimson, W. Eric L. Wells, William M. Coupling Statistical Segmentation and PCA Shape Modeling. 2004; 151-159.
69.	Tsai, Andy Wells, William M. Warfield, Simon K. Willsky, Alan S. Level Set Methods in an EM Framework for Shape Classification and Estimation. 2004; 1-9.
70.	Vigneron, L. Verly, J. G. Warfield, S. K. Modelling Surgical Cuts, Retractions, and Resections via Extended Finite Element Method. 2004; 311-318.
71.	Warfield SK. Medical Image Analysis Software. 2004.
72.	Weisenfeld NI, Warfield SK. Normalization of Joint Image-Intensity Statistics in MRI using the Kullback-Leibler Divergence. International Symposium on Biomedical Imaging. 2004.
73.	Wiegand LC, Warfield SK, Levitt JJ, Hirayasu Y, Salisbury DF, Heckers S, Dickey CC, Kikinis R, Jolesz FA, McCarley RW, Shenton ME. Prefrontal cortical thickness in first-episode psychosis: a magnetic resonance imaging study. Biol Psychiatry. 2004 Jan 15; 55(2):131-40.
74.	Zou KH, Warfield SK, Bharatha A, Tempany CM, Kaus MR, Haker SJ, Wells WM, Jolesz FA, Kikinis R. Statistical validation of image segmentation quality based on a spatial overlap index. Acad Radiol. 2004 Feb; 11(2):178-89.
75.	Als H, Duffy FH, McAnulty GB, Rivkin MJ, Vajapeyam S, Mulkern RV, Warfield SK, Huppi PS, Butler SC, Conneman N, Fischer C, Eichenwald EC. Early experience alters brain function and structure. Pediatrics. 2004 Apr; 113(4):846-57.
76.	Grau V, Mewes AU, Alcañiz M, Kikinis R, Warfield SK. Improved watershed transform for medical image segmentation using prior information. IEEE Trans Med Imaging. 2004 Apr; 23(4):447-58.
77.	Zou KH, Wells WM, Kikinis R, Warfield SK. Three validation metrics for automated probabilistic image segmentation of brain tumours. Stat Med. 2004 Apr 30; 23(8):1259-82.
78.	Tolsa CB, Zimine S, Warfield SK, Freschi M, Sancho Rossignol A, Lazeyras F, Hanquinet S, Pfizenmaier M, Huppi PS. Early alteration of structural and functional brain development in premature infants born with intrauterine growth restriction. Pediatr Res. 2004 Jul; 56(1):132-8.
79.	Goldberg-Zimring D, Achiron A, Warfield SK, Guttmann CR, Azhari H. Application of spherical harmonics derived space rotation invariant indices to the analysis of multiple sclerosis lesions' geometry by MRI. Magn Reson Imaging. 2004 Jul; 22(6):815-25.
80.	Warfield SK, Zou KH, Wells WM. Simultaneous truth and performance level estimation (STAPLE): an algorithm for the validation of image segmentation. IEEE Trans Med Imaging. 2004 Jul; 23(7):903-21.
81.	Wei X, Guttmann CR, Warfield SK, Eliasziw M, Mitchell JR. Has your patient's multiple sclerosis lesion burden or brain atrophy actually changed? Mult Scler. 2004 Aug; 10(4):402-6.
82.	Hoyte L, Jakab M, Warfield SK, Shott S, Flesh G, Fielding JR. Levator ani thickness variations in symptomatic and asymptomatic women using magnetic resonance-based 3-dimensional color mapping. Am J Obstet Gynecol. 2004 Sep; 191(3):856-61.
83.	Silverman SG, Sun MR, Tuncali K, Morrison PR, vanSonnenberg E, Shankar S, Zou KH, Warfield SK. Three-dimensional assessment of MRI-guided percutaneous cryotherapy of liver metastases. AJR Am J Roentgenol. 2004 Sep; 183(3):707-12.
84.	Warfield SK, Haker SJ, Talos IF, Kemper CA, Weisenfeld N, Mewes AU, Goldberg-Zimring D, Zou KH, Westin CF, Wells WM, Tempany CM, Golby A, Black PM, Jolesz FA, Kikinis R. Capturing intraoperative deformations: research experience at Brigham and Women's Hospital. Med Image Anal. 2005 Apr; 9(2):145-62.
85.	3D Statistical Shape Models to Embed Spatial Relationship Information. 2005.
86.	A Dynamic Data Driven Grid System for Intra-operative Image Guided Neurosurgery. 2005.
87.	An articulated registration method. 2005.
88.	Archip N, Rohling R, Cooperberg P, Tahmasebpour H, Warfield SK. Spectral clustering algorithms for ultrasound image segmentation. Med Image Comput Comput Assist Interv Int Conf Med Image Comput Comput Assist Interv. 2005; 8(Pt 2):862-9.
89.	Automated Atlas-Based Clustering of White Matter Fiber Tracts from DTMRI. 2005.
90.	Automatic Initialization of 3D Deformable Models for Cartilage Segmentation. 2005.
91.	brid Formulation of the Model-Based Non-rigid Registration Problem to Improve Accuracy and Robustness. 2005.
92.	Clatz O, Delingette H, Talos IF, Golby AJ, Kikinis R, Jolesz FA, Ayache N, Warfield SK. Hybrid formulation of the model-based non-rigid registration problem to improve accuracy and robustness. Med Image Comput Comput Assist Interv Int Conf Med Image Comput Comput Assist Interv. 2005; 8(Pt 2):295-302.
93.	Goldberg-Zimring D, Meier DS, Bouix S, Warfield SK. Studying anatomy and disease in medical images using shape analysis. Leondes CT, editor. Medical Imaging Systems Technology: Methods in Diagnosis Optimization. 2005; 4:329-361.
94.	Goldberg-Zimring D, Mewes AU, Maddah M, Warfield SK. Diffusion tensor magnetic resonance imaging in multiple sclerosis. J Neuroimaging. 2005; 15(4 Suppl):68S-81S.
95.	Haker S, Wells WM, Warfield SK, Talos IF, Bhagwat JG, Goldberg-Zimring D, Mian A, Ohno-Machado L, Zou KH. Combining classifiers using their receiver operating characteristics and maximum likelihood estimation. Med Image Comput Comput Assist Interv Int Conf Med Image Comput Comput Assist Interv. 2005; 8(Pt 1):506-14.
96.	Maddah M, Mewes AU, Haker S, Grimson WE, Warfield SK. Automated atlas-based clustering of white matter fiber tracts from DTMRI. Med Image Comput Comput Assist Interv Int Conf Med Image Comput Comput Assist Interv. 2005; 8(Pt 1):188-95.
97.	Medical Image Analysis for Image Guided Therapy. 2005.
98.	Wiegand LC, Warfield SK, Levitt JJ, Hirayasu Y, Salisbury DF, Heckers S, Bouix S, Schwartz D, Spencer M, Dickey CC, Kikinis R, Jolesz FA, McCarley RW, Shenton ME. An in vivo MRI study of prefrontal cortical complexity in first-episode psychosis. Am J Psychiatry. 2005 Jan; 162(1):65-70.
99.	Wittek A, Kikinis R, Warfield SK, Miller K. Brain shift computation using a fully nonlinear biomechanical model. Med Image Comput Comput Assist Interv Int Conf Med Image Comput Comput Assist Interv. 2005; 8(Pt 2):583-90.
100.	Inder TE, Warfield SK, Wang H, Hüppi PS, Volpe JJ. Abnormal cerebral structure is present at term in premature infants. Pediatrics. 2005 Feb; 115(2):286-94.
101.	Limperopoulos C, Soul JS, Gauvreau K, Huppi PS, Warfield SK, Bassan H, Robertson RL, Volpe JJ, du Plessis AJ. Late gestation cerebellar growth is rapid and impeded by premature birth. Pediatrics. 2005 Mar; 115(3):688-95.
102.	Verhey JF, Wisser J, Warfield SK, Rexilius J, Kikinis R. Non-rigid registration of a 3D ultrasound and a MR image data set of the female pelvic floor using a biomechanical model. Biomed Eng Online. 2005; 4(1):19.
103.	Zou KH, Tuncali K, Warfield SK, Zentai CP, Worku D, Morrison PR, Silverman SG. Three-dimensional assessment of MR imaging-guided percutaneous cryotherapy using multi-performer repeated segmentations: the value of supervised learning. Acad Radiol. 2005 Apr; 12(4):444-50.
104.	Wolfson L, Wei X, Hall CB, Panzer V, Wakefield D, Benson RR, Schmidt JA, Warfield SK, Guttmann CR. Accrual of MRI white matter abnormalities in elderly with normal and impaired mobility. J Neurol Sci. 2005 May 15; 232(1-2):23-7.
105.	Clatz O, Sermesant M, Bondiau PY, Delingette H, Warfield SK, Malandain G, Ayache N. Realistic simulation of the 3-D growth of brain tumors in MR images coupling diffusion with biomechanical deformation. IEEE Trans Med Imaging. 2005 Oct; 24(10):1334-46.
106.	Haidar H, Warfield SK, Soul JS. Talairach-based parcellation of neonatal brain magnetic resonance imaging data: validation of a new approach. J Neuroimaging. 2005 Oct; 15(4):305-14.
107.	Limperopoulos C, Soul JS, Haidar H, Huppi PS, Bassan H, Warfield SK, Robertson RL, Moore M, Akins P, Volpe JJ, du Plessis AJ. Impaired trophic interactions between the cerebellum and the cerebrum among preterm infants. Pediatrics. 2005 Oct; 116(4):844-50.
108.	Tsai A, Wells WM, Warfield SK, Willsky AS. An EM algorithm for shape classification based on level sets. Med Image Anal. 2005 Oct; 9(5):491-502.
109.	Clatz O, Delingette H, Talos IF, Golby AJ, Kikinis R, Jolesz FA, Ayache N, Warfield SK. Robust nonrigid registration to capture brain shift from intraoperative MRI. IEEE Trans Med Imaging. 2005 Nov; 24(11):1417-27.
110.	du Bois d'Aische A, Craene MD, Geets X, Gregoire V, Macq B, Warfield SK. Efficient multi-modal dense field non-rigid registration: alignment of histological and section images. Med Image Anal. 2005 Dec; 9(6):538-46.
111.	Zou KH, Greve DN, Wang M, Pieper SD, Warfield SK, White NS, Manandhar S, Brown GG, Vangel MG, Kikinis R, Wells WM. Reproducibility of functional MR imaging: preliminary results of prospective multi-institutional study performed by Biomedical Informatics Research Network. Radiology. 2005 Dec; 237(3):781-9.
112.	An evaluation of three approaches to tetrahedral mesh generation for deformable registration of brain MR images. 2006.
113.	Automatic Segmentation of the Knee Bones using 3D Active Shape Models. 2006.
114.	Dauguet J, Peled S, Berezovskii V, Delzescaux T, Warfield SK, Born R, Westin CF. 3D histological reconstruction of fiber tracts and direct comparison with diffusion tensor MRI tractography. Med Image Comput Comput Assist Interv Int Conf Med Image Comput Comput Assist Interv. 2006; 9(Pt 1):109-16.
115.	Imaging and visual analysis - Toward real-time image guided neurosurgery using distributed and grid computing. 2006.
116.	On-Demand High Performance Computing: Image Guided Neuro-Surgery Feasibility Study. 2006.
117.	Segmentation of newborn brain MRI. 2006.
118.	Statistical modeling and EM clustering of white matter fiber tracts. 2006.
119.	Warfield SK, Zou KH, Wells WM. Validation of image segmentation by estimating rater bias and variance. Med Image Comput Comput Assist Interv Int Conf Med Image Comput Comput Assist Interv. 2006; 9(Pt 2):839-47.
120.	Weisenfeld NI, Mewes AU, Warfield SK. Highly accurate segmentation of brain tissue and subcortical gray matter from newborn MRI. Med Image Comput Comput Assist Interv Int Conf Med Image Comput Comput Assist Interv. 2006; 9(Pt 1):199-206.
121.	Zacharia A, Zimine S, Lovblad KO, Warfield S, Thoeny H, Ozdoba C, Bossi E, Kreis R, Boesch C, Schroth G, Hüppi PS. Early assessment of brain maturation by MR imaging segmentation in neonates and premature infants. AJNR Am J Neuroradiol. 2006 May; 27(5):972-7.
122.	Wittek A, Miller K, Kikinis R, Warfield SK. Patient-specific model of brain deformation: application to medical image registration. J Biomech. 2007; 40(4):919-29.
123.	Shah DK, Anderson PJ, Carlin JB, Pavlovic M, Howard K, Thompson DK, Warfield SK, Inder TE. Reduction in cerebellar volumes in preterm infants: relationship to white matter injury and neurodevelopment at two years of age. Pediatr Res. 2006 Jul; 60(1):97-102.
124.	Wu Y, Warfield SK, Tan IL, Wells WM, Meier DS, van Schijndel RA, Barkhof F, Guttmann CR. Automated segmentation of multiple sclerosis lesion subtypes with multichannel MRI. Neuroimage. 2006 Sep; 32(3):1205-15.
125.	Mewes AU, Hüppi PS, Als H, Rybicki FJ, Inder TE, McAnulty GB, Mulkern RV, Robertson RL, Rivkin MJ, Warfield SK. Regional brain development in serial magnetic resonance imaging of low-risk preterm infants. Pediatrics. 2006 Jul; 118(1):23-33.
126.	Goldberg-Zimring D, Warfield SK. Novel image processing techniques to better understand white matter disruption in multiple sclerosis. Autoimmun Rev. 2006 Oct; 5(8):544-8.
127.	Shah DK, Guinane C, August P, Austin NC, Woodward LJ, Thompson DK, Warfield SK, Clemett R, Inder TE. Reduced occipital regional volumes at term predict impaired visual function in early childhood in very low birth weight infants. Invest Ophthalmol Vis Sci. 2006 Aug; 47(8):3366-73.
128.	Dimaio SP, Archip N, Hata N, Talos IF, Warfield SK, Majumdar A, Mcdannold N, Hynynen K, Morrison PR, Wells WM, Kacher DF, Ellis RE, Golby AJ, Black PM, Jolesz FA, Kikinis R. Image-guided neurosurgery at Brigham and Women's Hospital. IEEE Eng Med Biol Mag. 2006 Sep-Oct; 25(5):67-73.
129.	Thompson DK, Warfield SK, Carlin JB, Pavlovic M, Wang HX, Bear M, Kean MJ, Doyle LW, Egan GF, Inder TE. Perinatal risk factors altering regional brain structure in the preterm infant. Brain. 2007 Mar; 130(Pt 3):667-77.
130.	Jannin P, Krupinski E, Warfield S. Validation in medical image processing. IEEE Transactions on Medical Imaging. 2006; 25(11):1405-1409.
131.	Alayón S, Robertson R, Warfield SK, Ruiz-Alzola J. A fuzzy system for helping medical diagnosis of malformations of cortical development. J Biomed Inform. 2007 Jun; 40(3):221-35.
132.	Archip N, Clatz O, Whalen S, Kacher D, Fedorov A, Kot A, Chrisochoides N, Jolesz F, Golby A, Black PM, Warfield SK. Non-rigid alignment of pre-operative MRI, fMRI, and DT-MRI with intra-operative MRI for enhanced visualization and navigation in image-guided neurosurgery. Neuroimage. 2007 Apr 1; 35(2):609-24.
133.	Archip N, Tatli S, Morrison P, Jolesz F, Warfield SK, Silverman S. Non-rigid registration of pre-procedural MR images with intra-procedural unenhanced CT images for improved targeting of tumors during liver radiofrequency ablations. Med Image Comput Comput Assist Interv Int Conf Med Image Comput Comput Assist Interv. 2007; 10(Pt 2):969-77.
134.	Dauguet J, Bock D, Reid RC, Warfield SK. Alignment of large image series using cubic B-splines tessellation: application to transmission electron microscopy data. Med Image Comput Comput Assist Interv Int Conf Med Image Comput Comput Assist Interv. 2007; 10(Pt 2):710-7.
135.	Fripp J, Crozier S, Warfield SK, Ourselin S. Automatic segmentation of articular cartilage in magnetic resonance images of the knee. Med Image Comput Comput Assist Interv Int Conf Med Image Comput Comput Assist Interv. 2007; 10(Pt 2):186-94.
136.	Grid-Enabled Software Environment for Enhanced Dynamic Data-Driven Visualization and Navigation During Image-Guided Neurosurgery. 2007.
137.	Maddah M, Wells WM, Warfield SK, Westin CF, Grimson WE. Probabilistic clustering and quantitative analysis of white matter fiber tracts. Inf Process Med Imaging. 2007; 20:372-83.
138.	Fripp J, Crozier S, Warfield SK, Ourselin S. Automatic segmentation of the bone and extraction of the bone-cartilage interface from magnetic resonance images of the knee. Phys Med Biol. 2007 Mar 21; 52(6):1617-31.
139.	Mewes AU, Zöllei L, Hüppi PS, Als H, McAnulty GB, Inder TE, Wells WM, Warfield SK. Displacement of brain regions in preterm infants with non-synostotic dolichocephaly investigated by MRI. Neuroimage. 2007 Jul 15; 36(4):1074-85.
140.	Wisco JJ, Killiany RJ, Guttmann CR, Warfield SK, Moss MB, Rosene DL. An MRI study of age-related white and gray matter volume changes in the rhesus monkey. Neurobiol Aging. 2008 Oct; 29(10):1563-75.
141.	Dauguet J, Peled S, Berezovskii V, Delzescaux T, Warfield SK, Born R, Westin CF. Comparison of fiber tracts derived from in-vivo DTI tractography with 3D histological neural tract tracer reconstruction on a macaque brain. Neuroimage. 2007 Aug 15; 37(2):530-8.
142.	Archip N, Jolesz FA, Warfield SK. A validation framework for brain tumor segmentation. Acad Radiol. 2007 Oct; 14(10):1242-51.
143.	Maddah M, Grimson WE, Warfield SK, Wells WM. A unified framework for clustering and quantitative analysis of white matter fiber tracts. Med Image Anal. 2008 Apr; 12(2):191-202.
144.	Downing KT, Hoyte LP, Warfield SK, Weidner AC. Racial differences in pelvic floor muscle thickness in asymptomatic nulliparas as seen on magnetic resonance imaging-based three-dimensional color thickness mapping. Am J Obstet Gynecol. 2007 Dec; 197(6):625.e1-4.
145.	Commowick O, Fillard P, Clatz O, Warfield SK. Detection of DTI white matter abnormalities in multiple sclerosis patients. Med Image Comput Comput Assist Interv Int Conf Med Image Comput Comput Assist Interv. 2008; 11(Pt 1):975-82.
146.	Comparison of the deformations of brain tissues caused by tumor in seizure and non-seizure patients. 2008.
147.	Spiclin Z, Hans A, Duffy FH, Warfield SK, Likar B, Pernus F. EEG to MRI registration based on global and local similarities of MRI intensity distributions. Med Image Comput Comput Assist Interv Int Conf Med Image Comput Comput Assist Interv. 2008; 11(Pt 1):762-70.
148.	Archip N, Clatz O, Whalen S, Dimaio SP, Black PM, Jolesz FA, Golby A, Warfield SK. Compensation of geometric distortion effects on intraoperative magnetic resonance imaging for enhanced visualization in image-guided neurosurgery. Neurosurgery. 2008 Mar; 62(3 Suppl 1):209-15; discussion 215-6.
149.	Lodygensky GA, Seghier ML, Warfield SK, Tolsa CB, Sizonenko S, Lazeyras F, Hüppi PS. Intrauterine growth restriction affects the preterm infant's hippocampus. Pediatr Res. 2008 Apr; 63(4):438-43.
150.	Rivkin MJ, Davis PE, Lemaster JL, Cabral HJ, Warfield SK, Mulkern RV, Robson CD, Rose-Jacobs R, Frank DA. Volumetric MRI study of brain in children with intrauterine exposure to cocaine, alcohol, tobacco, and marijuana. Pediatrics. 2008 Apr; 121(4):741-50.
151.	Thompson DK, Wood SJ, Doyle LW, Warfield SK, Lodygensky GA, Anderson PJ, Egan GF, Inder TE. Neonate hippocampal volumes: prematurity, perinatal predictors, and 2-year outcome. Ann Neurol. 2008 May; 63(5):642-51.
152.	Wisco JJ, Rosene DL, Killiany RJ, Moss MB, Warfield SK, Egorova S, Wu Y, Liptak Z, Warner J, Guttmann CR. A rhesus monkey reference label atlas for template driven segmentation. J Med Primatol. 2008 May 5.
153.	Hoyte L, Damaser MS, Warfield SK, Chukkapalli G, Majumdar A, Choi DJ, Trivedi A, Krysl P. Quantity and distribution of levator ani stretch during simulated vaginal childbirth. Am J Obstet Gynecol. 2008 May 29.
154.	Dubois J, Benders M, Borradori-Tolsa C, Cachia A, Lazeyras F, Ha-Vinh Leuchter R, Sizonenko SV, Warfield SK, Mangin JF, Hüppi PS. Primary cortical folding in the human newborn: an early marker of later functional development. Brain. 2008 Jun 28.
155.	Warfield SK, Zou KH, Wells WM. Validation of image segmentation by estimating rater bias and variance. Philos Transact A Math Phys Eng Sci. 2008 Jul 13; 366(1874):2361-75.
156.	Rullmann M, Anwander A, Dannhauer M, Warfield SK, Duffy FH, Wolters CH. EEG source analysis of epileptiform activity using a 1 mm anisotropic hexahedra finite element head model. Neuroimage. 2009 Jan 15; 44(2):399-410.
157.	Thompson DK, Wood SJ, Doyle LW, Warfield SK, Egan GF, Inder TE. MR-determined hippocampal asymmetry in full-term and preterm neonates. Hippocampus. 2009; 19(2):118-23.

 

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